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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021344 ID=TCONS_00021344|Name=TCONS_00021344|organism=Clytia hemisphaerica|type=transcript|length=3629bpRun BLAST on NCBI protein sequence of TCONS_00021344-protein >TCONS_00021344-protein ID=TCONS_00021344-protein|Name=TCONS_00021344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1089bp MGLYSWGDDSCGQLALQRDSHQNLMNDVDLDDNNRTTPTQTQFDISQRAWRun BLAST on NCBI transcript from alignment at sc0000385:293602..347021+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021344 ID=TCONS_00021344|Name=TCONS_00021344|organism=Clytia hemisphaerica|type=transcript|length=53420bp|location=Sequence derived from alignment at sc0000385:293602..347021+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000385:293602..347021+ >TCONS_00021344 ID=TCONS_00021344|Name=TCONS_00021344|organism=Clytia hemisphaerica|type=CDS|length=94830bp|location=Sequence derived from alignment at sc0000385:293602..347021+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021344 vs. Swiss-Prot (Human)
Match: HERC4 (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1) HSP 1 Score: 693.73 bits (1789), Expect = 0.000e+0 Identity = 408/1118 (36.49%), Postives = 629/1118 (56.26%), Query Frame = 2
Query: 53 LYSWGDDSCGQLALQRDSHQXXXXXXXXXXXXRTTPTQTQFDISQRAWKVACGWAHTIIITEDKKAFSCGSNEFGQLGRLGDENTIAQIPYLDSEHVVSAACGSSHTLLLSEKGQVFSFGSNINGQLGVGSENESYVKPLLVEKISINHEVTLISCGKDHCLALCSDGQLYGWGNNEFGQLGFGKKSKKETKPQLITVLQGCPIVHIATGGFHSFALTVSGLVFAWGKNSYGQLGLGNVEDKCYPTKVKLSLPQGQSVRYIACGEEHSVLLTSTGNIFTFGCGSSGQLGHNSFSDEHIPKMVVEL-GSAITNISCGRKHTLCYSITNGSLYAFGLNVKGQLGLGHFNKQNSPMKIKSFWRTFSKTDFINISSTVGQKDDVYFTELEHFFENISQKDVEIGSANTFDNTFMEVIAGGLNTFIVTCPLIEKPRLPTLNHLIERSCLCHLTKQKANQMVERWQTTNATFDEKSRIRRYLAIAFSNQSTLNASFLAQNCTSTSRSE---HGLHPMGIHVSLEKLWQV--TELLEVVKTXXXXXXXXXXHNNPADLECLRVYIIIPEILHKMAPEEMAPLGVSFAVAFGGLQLPAKKALIGWWKLLPATFLERIVQCFKWSILELF--------PTERRAPFIQNTLASFDACLKVLKVIHELSEEGDEVLSHASFYIPGLMDKIDIRKDFLSYIENPD---------------GFAFSNFPFVFEVKEKAFMMEYDAELQMRFMVGRAHMMNLNSIASSGFIDFPQS--PYLVLSIRRHHLVQDTLNNILSQNLMDFKKPLKIKFVDEMAEDAGGVKKEFFLLLMRDLLDPKYGMFDFFTETGCIWFKYGSFEGPEMFMLIGVICGLAIYNSIIVDVPFPVCLYKKILGRKTALDDYRYIDPGIYRGLQDMLDYTESDFGDIYDMNFQVMESIYGESQVIDLKAGGKDILVTQENKEEYVDLFLQHKLHKSVSREFEAFKDGFLKVCDGKALHFLHPQELMELVVGSQEYDFNELEKVAEYQGEYYRRHPIIENFWKVFHELTFPLKKKFLAFLTGTSKVSVLGMKHMKFIIQPVSGGEDGSHLPVAHTCFNLLDLPRYPDLDTMRKKLHQAIENSEGFGII 3313
+ WG+ S GQL L + ++ P ++ F I++R V CG HT+ + +D ++CG N+ GQLG Q+ LD++++V+ +CG +HTL L++KGQV+++G + +GQLG+ E P ++ +S + ++ ++CG H LAL +++ WG N++GQLG G KK+T PQL+ L G P + +A GG HSF LT+SG +F WG+N +GQLGL + D+ P +K SL + Q + YI CGE+H+ LT G +FTFG G GQLGHNS S E P+ V EL GS +T I+CGR+HT + ++G +Y+FGL GQLG G + + SP +K W ++ +I S E +F K + G +F + G + F CP K ++ T+N + + L + + + ++ T FS+ LN SFLA + R+ G+ + KL Q ++ + V S+ +LI L ++ D+E LR Y+ +PE + + F A L+ K L WW +L +IV+ FK ++ L P+ERR I N+ LKVL+++H ++E+ +++ + FYI + + IDIR D++++++ +PFVF+ + K +++ DA LQM+ + +AH N++S+ F+ +S P L+L +RR ++V D + + +D+KKPLK+ FV E A DAGGV+KEFFLL+MR+LLDPKYGMF ++ ++ IWF +FE ++F LIGVICGLAIYN IVD+ FP+ LYKK+L +K +LDD + + P + R +Q +LDY E D + + +NF + +G ++V +L G D V ++N++E+VD ++ + +KSV+ F+AF GF KVC GK L P EL +V+G+ YD+ ELEK EY+GEY+ HP I+ FW+VFHEL KK+FL FLTG+ ++ +LGMK +K +IQ GGE+ +LPV+HTCFNLLDLP+Y + +T+R KL QAI+++EGF +I
Sbjct: 1 MLCWGNASFGQLGLGGIDEEIVL-----------EPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLS-DIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLK-SL-RSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWYPYNGQCLPDIDS-------------EEYF---CVKRIFSGGDQSFSHYSSPQNCGPPDDF--RCPNPTK-QIWTVNEALIQKWLSYPSGRFPVEIANEIDGT-----------------FSSSGCLNGSFLAVSNDDHYRTGTRFSGVDMNAARLLFHKLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSDSNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKIGIPPSERR---IFNSF--LHTALKVLEILHRVNEKMGQIIQYDKFYIHEVQELIDIRNDYINWVQQQAYGMDVNHGLTELADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSL----FLPVIESVNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNCTIVDLHFPLALYKKLLKKKPSLDDLKELMPDVGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGEE--YLPVSHTCFNLLDLPKYTEKETLRSKLIQAIDHNEGFSLI 1057 HSP 2 Score: 117.472 bits (293), Expect = 1.847e-26 Identity = 82/260 (31.54%), Postives = 130/260 (50.00%), Query Frame = 2
Query: 35 INNTMGLYSWGDDSCGQLALQRDSHQXXXXXXXXXXXXRTTPTQTQFDISQRAWKVACGWAHTIIITEDKKAFSCGSNEFGQLGRLGDENTIAQIPYLDSEHV----VSAACGSSHTLLLSEKGQVFSFGSNINGQLGVGSENESYVKPLLVEKISINHEVTLISCGKDHCLALCSDGQLYGWGNNEFGQLGFGKKSKKETKPQLITVLQGCPIVHIATGGFHSFALT-VSGLVFAWGKNSYGQLGLGNVEDKCYPTKVK 799
+N+ +Y+WG DS GQL L + + R + + I Q VACG+ H++ +++ + F G N++GQLG LG + P L + + A G +H+ +L+ G +F +G N GQLG+ EN+ YV LL K + ++ I CG+DH AL +G ++ +G +GQLG S E P+ + L G + IA G H+ A SG ++++G GQLG G+ ++ P VK
Sbjct: 99 LNDKGQVYAWGLDSDGQLGL--------VGSEECIRVPRNIKSLSDIQIVQ----VACGYYHSLALSKASEVFCWGQNKYGQLG-LGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLL--KSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTS-HEINPRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVK 342 The following BLAST results are available for this feature:
BLAST of TCONS_00021344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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