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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021865 ID=TCONS_00021865|Name=TCONS_00021865|organism=Clytia hemisphaerica|type=transcript|length=4284bpRun BLAST on NCBI protein sequence of TCONS_00021865-protein >TCONS_00021865-protein ID=TCONS_00021865-protein|Name=TCONS_00021865-protein|organism=Clytia hemisphaerica|type=polypeptide|length=935bp MGKAKKRKTADFHKTKLKVGKRKPVGTNVTNTTFKTSSINITSQLEESTDRun BLAST on NCBI transcript from alignment at sc0000396:8414..23687+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021865 ID=TCONS_00021865|Name=TCONS_00021865|organism=Clytia hemisphaerica|type=transcript|length=15274bp|location=Sequence derived from alignment at sc0000396:8414..23687+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000396:8414..23687+ >TCONS_00021865 ID=TCONS_00021865|Name=TCONS_00021865|organism=Clytia hemisphaerica|type=CDS|length=39312bp|location=Sequence derived from alignment at sc0000396:8414..23687+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021865 vs. Swiss-Prot (Human)
Match: TEX10 (Testis-expressed protein 10 OS=Homo sapiens GN=TEX10 PE=1 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 3.486e-33 Identity = 165/679 (24.30%), Postives = 308/679 (45.36%), Query Frame = 2
Query: 101 KKRKTADFHKTKLKVGKRKPVGTNVTNTTFKTSSINITSQL-EESTDPKTKRNLSRKDLLSQLNHYNATIRHEACLGFRDLFQSHPEIMHEQINSWIPKLLDKMTDTDAAVRHSFTLCMQHVSRNLPIHEISPFIHIIVAHLCCGMTHINEAVQXXXXXXXXXXXXYFPRLMVSYSHKILPSLIDLMSKQGKRETNSSQSLNTSKVKGISSLVSRD------VSFNVEGKMSSLKARTKVLSKLQKVLFVLFDNDEKTNDRNDNWDSDQTVYVTGQPVYSRLNNHRKFNLIGHERTREDWLQIASDQNQGQDHYAV-----------------DFFYQIYPVLLNSWIEYEPGQLASGLNDSSSIRASLPGMTNVIGILNIFVTLSRNNKGFQLFEN---EASFKEFCTHFLKSFALPLTFTKMKSIAKQETTNDIQRFA--------MDFNFVMAKTICQLFSKSAMLTDGKLRARYLKQLMVFCSDVLENSGLLSKEKILAFMDVFEEVMKLKRSLKSKEGSYIDCNHIIQTMIQCYSRGSVTSPWKIPLLQFFQKLCFEKDSNWLGADMLDHLESIITIVIKNVWSLPSSALGLIRSSLV--FIKVVSVCQFCQEASMQEELQKTLIKMTDITNGFYHRLDEQTFQKVIELLHSLKNLPTQLLKNATMLCFQSDVT 2026
K+++ DF K KLKVGK+KP N T T FKT +I++ QL E+ T P R L+ KDLLSQ++HYNA ++ A LG +DL +P I+ +++ + ++ TD DA VR + +Q ++ + +ISPF ++ AHL MTHI E +Q DSL +L+++L+ +P L+ S +L + ++L+S Q SK L++RD +S N +++S + R KVL +L K L L D + + + + + T ++ H N H + E+ + +Q + Y V F I P+L+ W+E P QLA+ + + R L M V+ I+++ LS+ E+ + +F HF+ F P ++ ++E I+ + N ++ + L + S + D +++ + F ++ LE+ L+ +++ + V +M+++ ++E D +I+ + Y + + P + LL+FF K+ ++ L + + +++ + + L + LG L I ++ + + LQ T +++ D G L + Q++++L++ L +LP LL + C ++
Sbjct: 4 KRKRQHDFQKVKLKVGKKKPKLQNATPTNFKTKTIHLPEQLKEDGTLPTNNRKLNIKDLLSQMHHYNAGVKQSALLGLKDLLSQYPFIIDAHLSNILSEVTAVFTDKDANVRLAAVQLLQFLAPKIRAEQISPFFPLVSAHLSSAMTHITEGIQEDSLKVLDILLEQYPALITGRSSILLKNFVELISHQ-----------QLSK-----GLINRDRSQSWILSVNPNRRLTSQQWRLKVLVRLSKFLQALADGSSRLRESEGLQEQKENPHATSNSIFINWKEHA--NDQQHIQVYENGGSQPNVSSQFRLRYLVGGLSGVDEGLSSTENLKGFIEIIIPLLIECWVEAVPPQLATPVGNGIE-REPLQVMQQVLNIISLLWKLSKQQDETHKLESWLRKNYLIDFKHHFMSRF--PYVLKEITKHKRKEPNKSIKHCTVLSNNIDHLLLNLTLSDIMVSLANASTLQKD----CSWIEMIRKFVTETLEDGSRLNSKQLNRLLGVSWRLMQIQ---PNRE----DTETLIKAVYTLYQQRGLILPVRTLLLKFFSKIYQTEE---LRSCRFRYRSKVLSRWLAGL-PLQLAHLGSRNPELSTQLIDIIHTAAARANKELLKSLQATALRIYDPQEGAVVVLPADSQQRLVQLVYFLPSLPADLLSRLSRCCIMGRLS 646 The following BLAST results are available for this feature:
BLAST of TCONS_00021865 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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