TCONS_00021889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021889
Unique NameTCONS_00021889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length944

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021889 ID=TCONS_00021889|Name=TCONS_00021889|organism=Clytia hemisphaerica|type=transcript|length=944bp
TAAGCTTGGAACAAGGAACCGCATTCTGTATTTCACGTGGATCATGGCGT
TACGTGTATTAGCTGTTCTTTTGGCCGTAACTCTATCTTGCGCTTACGCT
AGAAAAGTTGAGATTTGTGGTGGAGAGAGTGAGACCTTGAGATGTCCTCA
AGGCGGGGAAATTCACATTCATTCGGCACGCTGGGGCCGACGAGCCAGTT
CAACATGCCACACCTACAGTTGGGTTAAACCATGCAAAATGGCGGATTAT
ACAGATCGTATTCAATCTTTCTGCAATGGGCACGCCTCTTGTAAAGTCAA
AGCTAATGGATATATGTTCGGATATTTCTCTTGCTACTGGAACGAGCCTT
ACGCTGAAGTCGTTTACACTTGCAATAAAAAAGCCACAACCGCCGCTCCG
ACAACTGTCGCACCAACTGAGCCAGCAATCAGACAAGCTTGCGTTGCTGG
CAAAGATATGAAATTACTTCATTGTCCAAGTGGTTCAAAAGTGTTGATCA
CAGACAGTTATATCTCAACAACTCAACCTTGCGAACAAGAAGGAAGTGGA
GAAGAACCAGAGgctgTTGATTGCGAATCAGAGATTTACGTGCAGCAATA
TTTCAATGTCATCTGCAACATGAGACGATCTCCGACATGCGTACTGGCCA
TCAACCAAGCTATGTTCGCCAAAGAAGGCTTGGAATGCCGTGGATATCAT
CACTATCTCCATGCTCAATACCAATGTCGCTATTAGCATAATAGATGTTT
AAAGAATAACGATTTTTTCTATACTTTAATCCTTATAGTTATGTTTTTGT
TCTCAGAGTTACGCTCCTACCATATTGATTGTTATAATATCAGAGATTAA
TTTACAACAATTtgtgtttcatttttcttgggGGTAAAATATATCTCTGG
TGAGAGGGAAATACTATTAAATGAATACAGGCTCGCTTTTTTTC
Run BLAST on NCBI

transcript from alignment at sc0000396:22374..24567-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021889 ID=TCONS_00021889|Name=TCONS_00021889|organism=Clytia hemisphaerica|type=transcript|length=2194bp|location=Sequence derived from alignment at sc0000396:22374..24567- (Clytia hemisphaerica)
TAAGCTTGGAACAAGGAACCGCATTCTGTATTTCACGTGGATCATGGCGT
TACGTGTATTAGCTGTTCTTTTGGCCGTAACTCTATCTTGCGCTTACGCT
AGAAAAGGTACTTTATCATTTTGCCCTCTCTTAAGATATATCAGCTCACT
ATCGTAAGTGTGACCACAGAACAAACGTATTCTAAAAAGTTCGCCTTAGT
TTCTAAGTTTTTAAAAACACGAAGACAAATTTGTACGATTAGTAAAAAAA
TTGATTTTTATCATTTCAGTTGAGATTTGTGGTGGAGAGAGTGAGACCTT
GAGATGTCCTCAAGGCGGGGAAATTCACATTCATTCGGCACGCTGGGGCC
GACGAGCCAGTTCAACATGCCACACCTACAGTTGGGTTAAACCATGCAAA
ATGGCGGATTATACAGATCGTATTCAATCTTTCTGCAATGGGCACGCCTC
TTGTAAAGTCAAAGCTAATGGATATATGTTCGGATATTTCTCTTGCTACT
GGAACGAGCCTTACGCTGAAGTCGTTTACACTTGCAATAAAAAAGGTATA
TTTATATATCTCACGACATCTCACAAAGCTTTTTTCAGGCTTCAATGTTG
TCTTCTCCCATGTGACTCGATAAGCTGCATATTTAAGACCATTTAAATCA
TAAAGCTGAGGCGGCGCACTGTACCAACGGTTTTCCCTTGCGAATATAAA
ATCAAATGAGCTTTTTCAAGCCTTTGGATTTAAGTCTAAAATTTTCTCAA
AATGCTCTAATTTTCAGCATTTTGTGGGGTTTTGTGTAATTTTCTAAGAA
GATTTCCTAAAATATTGAGCGCTTTAGAGTCTGCGAATTCTTATAATATT
CTCAACTTGTTGTTGATCATCAAAGCCTTATGATGTTCTTATATAGTGTG
AAAAAGTGTACCAGTTTATAAACCATCTACAATTACTGTTCTTTGATTTC
TCACTCAGCCACAACCGCCGCTCCGACAACTGTCGCACCAACTGAGCCAG
CAATCAGACAAGGTAACAAACGGGTGAAAATATAATCATTTTTTTTGAAA
ACGGAGAATACAAAAACTAGAAGATTAATATAACACCCACTCCAGACATA
CAAGGGGTCCGGGAACAACAGGACGAAATTTTTGGACACACAGTAAAGGG
GATACACTCACGATAACACTTTCTAATAATTTTCTCTTTAACAAGCTTGC
GTTGCTGGCAAAGATATGAAATTACTTCATTGTCCAAGTGGTTCAAAAGT
GTTGATCACAGACAGTTATATCTCAACAACTCAACCTTGCGAACAAGAAG
GAAGTGGAGAAGAACCAGAGGTCAGCTATTCTTTTTGAGTTCTTTAACTT
TTGTTCAATATTTGAATGCTAATATTTTAAAGGAAGGAACTTTCGCGGAG
AGAAGCTTTCGCGATTTTCACAAATTTCGGGCAAATTTACAAAAGTTAAT
TCCGCGAAATATTCTGAAAACTTAATTCGCGAGAGTTTATTCTCGTGAAA
AAAAAATACTTTTCCTAAAAATCTGTCTTTCATTATGAAATTTTCTTTAA
AGCAATTTAAACATTAATTTTGAAACCCACTTTAGATTGAAGAAAGTGAG
GTGAAATTCAGCATGGAGGTGCCACCCTTTCTGTCGCTTCCTTTTACTCC
CAAATATTATCTTTAAAGTTTGCCAATTTGCTTATTGAAAACGTCTAAAA
TTATTGAAAATTTGTTTTTACTCTATTTAGTTTAGGGATTTAATCGGGTT
TATTAAGGGTGTTTGAAAACTCAAGGGCGAATATTCTAAATAACAATGAA
TATCTTTTTTAGGCTGTTGATTGCGAATCAGAGATTTACGTGCAGCAATA
TTTCAATGTCATCTGCAACATGAGACGATCTCCGACATGCGTACTGGCCA
TCAACCAAGCTATGTTCGCCAAAGAAGGCTTGGAATGCCGTGGATATCAT
CACTATCTCCATGCTCAATACCAATGTCGCTATTAGCATAATAGATGTTT
AAAGAATAACGATTTTTTCTATACTTTAATCCTTATAGTTATGTTTTTGT
TCTCAGAGTTACGCTCCTACCATATTGATTGTTATAATATCAGAGATTAA
TTTACAACAATTTGTGTTTCATTTTTCTTGGGGGTAAAATATATCTCTGG
TGAGAGGGAAATACTATTAAATGAATACAGGCTCGCTTTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012283XLOC_012283Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021889-exon-sc0000396-1575043694:24461..24567TCONS_00021889-exon-sc0000396-1575043694:24461..24567Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1575043694:24023..24298TCONS_00021889-exon-sc0000396-1575043694:24023..24298Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1575043694:23556..23609TCONS_00021889-exon-sc0000396-1575043694:23556..23609Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1575043694:23248..23372TCONS_00021889-exon-sc0000396-1575043694:23248..23372Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1575043694:22374..22755TCONS_00021889-exon-sc0000396-1575043694:22374..22755Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1510915933:24461..24567TCONS_00021889-exon-sc0000396-1510915933:24461..24567Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1510915933:24023..24298TCONS_00021889-exon-sc0000396-1510915933:24023..24298Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1510915933:23556..23609TCONS_00021889-exon-sc0000396-1510915933:23556..23609Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1510915933:23248..23372TCONS_00021889-exon-sc0000396-1510915933:23248..23372Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1510915933:22374..22755TCONS_00021889-exon-sc0000396-1510915933:22374..22755Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1491911889:24461..24567TCONS_00021889-exon-sc0000396-1491911889:24461..24567Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1491911889:24023..24298TCONS_00021889-exon-sc0000396-1491911889:24023..24298Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1491911889:23556..23609TCONS_00021889-exon-sc0000396-1491911889:23556..23609Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1491911889:23248..23372TCONS_00021889-exon-sc0000396-1491911889:23248..23372Clytia hemisphaericaexon
TCONS_00021889-exon-sc0000396-1491911889:22374..22755TCONS_00021889-exon-sc0000396-1491911889:22374..22755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000396supercontigsc0000396:22374..24567 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0956148	0	0	0	0.102876	0	0	0.0819184	0.0507389	0	0.03256	185.24	162.95	4.31002e-10	0.481843	26.7778	30.3919	1237	1252.98	216.774	237.681	74.1798	118.777	51.1154	52.7149	0	0	0.0535749	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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