TCONS_00022692 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022692
Unique NameTCONS_00022692
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022692 ID=TCONS_00022692|Name=TCONS_00022692|organism=Clytia hemisphaerica|type=transcript|length=601bp
GGTTTTCTGCTTTCTGCTTTCAAATTTGcaattcaactttttcaattgGT
CCTTAAAACTATTATCTGATGAATTCATTTGAAACTGGAGATGATCTTAG
CTTCTTCGGACCTAAATCTTAAGACTATTAGTCCTCCAGTAAAACTCATG
CTAACCATCTAGACTTTTGAGGTTCAAATATAGTTAAATTACAAGCACAA
ATTGATACTATATGTTTTTGCATGAAAGCATGTAATATGAAATGACTTTG
ATGATAACCTCTACTGCTATTCAAACTATTGAATTCTTAATGAACGTGGT
ATGTAGAAATTGCATTCCACATGAATCTATTCGTGAAAAGTTCAATGGAA
AATGACTTTTATTTGCTCTTTTATCTTACTTATTATCAGATATAATGTAA
AACACGCATTTGTGACCTTTTAATTAATTACTTCATGCTGGTTTCAATTA
AGATCCAACATGGTTTTCGTGTAAGAATAAAAGTCACTACAGAATTTAAA
ATTGCTGATGTTCGATTTTGACCAAATGCCACCTTCAATTTTGGAAAGGG
ATCCAAATGTGAGATGGGAGATTACAAACAACTTTTTAAGCTACGATCAA
G
Run BLAST on NCBI

transcript from alignment at sc0000430:270680..271280

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022692 ID=TCONS_00022692|Name=TCONS_00022692|organism=Clytia hemisphaerica|type=transcript|length=601bp|location=Sequence derived from alignment at sc0000430:270680..271280 (Clytia hemisphaerica)
CTTGATCGTAGCTTAAAAAGTTGTTTGTAATCTCCCATCTCACATTTGGA
TCCCTTTCCAAAATTGAAGGTGGCATTTGGTCAAAATCGAACATCAGCAA
TTTTAAATTCTGTAGTGACTTTTATTCTTACACGAAAACCATGTTGGATC
TTAATTGAAACCAGCATGAAGTAATTAATTAAAAGGTCACAAATGCGTGT
TTTACATTATATCTGATAATAAGTAAGATAAAAGAGCAAATAAAAGTCAT
TTTCCATTGAACTTTTCACGAATAGATTCATGTGGAATGCAATTTCTACA
TACCACGTTCATTAAGAATTCAATAGTTTGAATAGCAGTAGAGGTTATCA
TCAAAGTCATTTCATATTACATGCTTTCATGCAAAAACATATAGTATCAA
TTTGTGCTTGTAATTTAACTATATTTGAACCTCAAAAGTCTAGATGGTTA
GCATGAGTTTTACTGGAGGACTAATAGTCTTAAGATTTAGGTCCGAAGAA
GCTAAGATCATCTCCAGTTTCAAATGAATTCATCAGATAATAGTTTTAAG
GACcaattgaaaaagttgaattgCAAATTTGAAAGCAGAAAGCAGAAAAC
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012757XLOC_012757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022692-exon-sc0000430-1491911889:270680..271280TCONS_00022692-exon-sc0000430-1491911889:270680..271280Clytia hemisphaericaexon
TCONS_00022692-exon-sc0000430-1510915933:270680..271280TCONS_00022692-exon-sc0000430-1510915933:270680..271280Clytia hemisphaericaexon
TCONS_00022692-exon-sc0000430-1575043694:270680..271280TCONS_00022692-exon-sc0000430-1575043694:270680..271280Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000430supercontigsc0000430:270680..271280 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.452522	0.706049	0.922264	1.20306	0	0	0.116358	0.108933	0	0	0	0	0.0601917	0	0	0	0	0	0	0	0.350019	0.640227	0	0.0943426	0	0	0	0.132442	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022692 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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