TCONS_00023339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023339
Unique NameTCONS_00023339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023339 ID=TCONS_00023339|Name=TCONS_00023339|organism=Clytia hemisphaerica|type=transcript|length=557bp
GTATAGGGTTTCAAGTTTCATAATTGTAAGACCGAATTTCTCTCGTTGCG
ATAGTAAAACCTATTAAATTTCGAATATCAGGAACTGTAAAGGTTTTAAA
AGACCTGATATTATTCTTCTTGtttaaaagatcattttggttACCCGTAT
CGTGGAAAAGAATGTGCTGATCGGAAACCCCGTGTGGTGGATGACTTCCC
TTTCGAGTTTGGCAAAAGATACTTAATTTCCAACATAACGGAATTTAACA
TTTGATTTCCATTTGTTTTTTCCGATACTGTAATAGCCTACAAGGTCAAA
TGTtaaacccctgtgtcacagagccactgggaccccagccccattgaaaa
gtttggcaaaaatttcgtccccgttgGGGAAAAACCCtgtaatttcagcc
ccactgggaaattgactttgattttgtccccattcgaaattccatgttta
aaaattgcactccaaaactatccccATGGATTTTTTAACGttggagcaat
agaatttctatccccattgggatttcaacaggaatttttatccccactga
gtaaaaa
Run BLAST on NCBI

transcript from alignment at sc0000450:170572..171128

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023339 ID=TCONS_00023339|Name=TCONS_00023339|organism=Clytia hemisphaerica|type=transcript|length=557bp|location=Sequence derived from alignment at sc0000450:170572..171128 (Clytia hemisphaerica)
tttttactcagtggggataaaaattcctgttgaaatcccaatggggatag
aaattctattgctccaaCGTTAAAAAATCCATggggatagttttggagtg
caatttttaaacatggaatttcgaatggggacaaaatcaaagtcaatttc
ccagtggggctgaaattacaGGGTTTTTCCCcaacggggacgaaattttt
gccaaacttttcaatggggctggggtcccagtggctctgtgacacagggg
tttaACATTTGACCTTGTAGGCTATTACAGTATCGGAAAAAACAAATGGA
AATCAAATGTTAAATTCCGTTATGTTGGAAATTAAGTATCTTTTGCCAAA
CTCGAAAGGGAAGTCATCCACCACACGGGGTTTCCGATCAGCACATTCTT
TTCCACGATACGGGTaaccaaaatgatcttttaaaCAAGAAGAATAATAT
CAGGTCTTTTAAAACCTTTACAGTTCCTGATATTCGAAATTTAATAGGTT
TTACTATCGCAACGAGAGAAATTCGGTCTTACAATTATGAAACTTGAAAC
CCTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013126XLOC_013126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023339-exon-sc0000450-1491911889:170572..171128TCONS_00023339-exon-sc0000450-1491911889:170572..171128Clytia hemisphaericaexon
TCONS_00023339-exon-sc0000450-1510915933:170572..171128TCONS_00023339-exon-sc0000450-1510915933:170572..171128Clytia hemisphaericaexon
TCONS_00023339-exon-sc0000450-1575043694:170572..171128TCONS_00023339-exon-sc0000450-1575043694:170572..171128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000450supercontigsc0000450:170572..171128 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101948	0.497075	1.61602	3.31089	0.137482	0.21728	0	0.130753	2.52121	1.54956	0	0.897162	0.0686363	0.0704132	0.291034	0.124248	0.306127	0	0.108445	0.343775	0.878101	0.604379	0.116891	0	0	0	0.279581	0.149188	0.268081	0.742743
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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