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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023870 ID=TCONS_00023870|Name=TCONS_00023870|organism=Clytia hemisphaerica|type=transcript|length=1248bp
tttgaagtTATAAATGATATAACTATGACTATTGACTGCAAAAATCAATG
GGAATTACTTGTTCGTGGTAAAAGGCTTCCCAAAAATGAATATCTTCGAA
GATTTTCCCTCACTTTGGAAAATACTGAcacatttattgaatttttccaa
aaacacAGAGTTTGTCCTGGAATATCTGGATATGAAGATGTCATCAAAAG
TAAACTGGATATCAAATATccctttttatcaattaatGGAGACGAAAATG
CAAATGTGGAGAATACATACTATAAGCAGCTCTATCACCTAGAGGATTAT
AGCATAATCAGGCATGTTGATTGTAATCTTATTTTGAACACTGACAGTAA
CAACATAAGTAATGATGAATTGGATGAAATGTGCTCAAAATGTAGGAAGT
ATAAGAATTCTCAACTTACAAAGCAACGGTCAAGACTAAGTGATGAACCA
GAAGCTAAGAGGAAGCGCACCAGTGACACCTCGACAACTAACTCACGTTA
TATGTCTAGAGAAGAGTTGgcagaaaaactgaaaaatgctcaGATGAAAA
AAAGGGAACTTATGAAAAAAGTGAGTAAACTAAATTTCCAAATTCAGGAA
GATATGCAGCTTAAGGCAGTTCAAGTGACAGATGATGATGAGCATGACGT
CCtggaaaaagttattaaaaacaCAACATGTGATGGTTTTGAAGAGGATT
CGCCACAATGGCTGCTTTGGCAACAGCAAAAGTTACAAGCGTCCAAGAAA
AACAGCAAAGGAATGCGTTGGCATCCTTTAATCATCAGatggTGCCTGAG
TATTTACCAAACCTCACCAGCTGCATATAAGCAGattgcaaacaaaaatt
tgaattttcttcgACTACCATGTACAAAGACCTTATACAAATACCTAAAC
TTCACTGATCTCAGCACAGGCTTCAATCCAGATATCATAAAGAGACTTGC
TGAACAAGCAAATGTCTCAAACATGAAAGCAAAAGACAAGCCTGATGTCA
TAGCATTTGACGAAATGAAGATCAAAAGCTCATTGGTATATCACAGAGGC
TCTGGAAAACTGATTGGTTTCACGGAGATGAGTGACCTTAACGACGAGTT
CTCACACTTTTTGCATAATAATGAAGAAACAAACAGCgacaatttcaaat
ttgaacgTGATTTGGCAACACATGTTAATCTCTACATGGTTCGTAGAATA
TGCTCCAATCTCCTCTACCCTTTTGGATACTTTGCCACTGCTGGGATG Run BLAST on NCBI protein sequence of TCONS_00023870-protein >TCONS_00023870-protein ID=TCONS_00023870-protein|Name=TCONS_00023870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=416bp
FEVINDITMTIDCKNQWELLVRGKRLPKNEYLRRFSLTLENTDTFIEFFQ
KHRVCPGISGYEDVIKSKLDIKYPFLSINGDENANVENTYYKQLYHLEDY
SIIRHVDCNLILNTDSNNISNDELDEMCSKCRKYKNSQLTKQRSRLSDEP
EAKRKRTSDTSTTNSRYMSREELAEKLKNAQMKKRELMKKVSKLNFQIQE
DMQLKAVQVTDDDEHDVLEKVIKNTTCDGFEEDSPQWLLWQQQKLQASKK
NSKGMRWHPLIIRWCLSIYQTSPAAYKQIANKNLNFLRLPCTKTLYKYLN
FTDLSTGFNPDIIKRLAEQANVSNMKAKDKPDVIAFDEMKIKSSLVYHRG
SGKLIGFTEMSDLNDEFSHFLHNNEETNSDNFKFERDLATHVNLYMVRRI
CSNLLYPFGYFATAGM Run BLAST on NCBI transcript from alignment at sc0000464:82920..84404+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023870 ID=TCONS_00023870|Name=TCONS_00023870|organism=Clytia hemisphaerica|type=transcript|length=1485bp|location=Sequence derived from alignment at sc0000464:82920..84404+ (Clytia hemisphaerica)
tttgaagtTATAAATGATATAACTATGACTATTGACTGCAAAAATCAATG
GGAATTACTTGTTCGTGGTAAAAGGCTTCCCAAAAATGAATATCTTCGAA
GATTTTCCCTCACTTTGGAAAATACTGAcacatttattgaatttttccaa
aaacacAGAGTTTGTCCTGGAATATCTGGATATGAAGATGTCATCAAAAG
TAAACTGGATATCAAATATccctttttatcaattaatGGAGACGAAAATG
CAAATGTGGAGAATACATACTATAAGCAGCTCTATCACCTAGAGGATTAT
AGCATAATCAGGCATGTTGATTGTAATCTTATTTTGAACACTGACAGTAA
CAACATAAGTAATGATGAATTGGATGAAATGTGCTCAAAATGTAGGAAGT
ATAAGAATTCTCAACTTACAAAGCAACGGTCAAGACTAAGTGATGAACCA
GAAGCTAAGAGGAAGCGCACCAGTGACACCTCGACAACTAACTCACGTTA
TATGTCTAGAGAAGAGTTGgcagaaaaactgaaaaatgctcaGATGAAAA
AAAGGGAACTTATGAAAAAAGTGAGTAAACTAAATTTCCAAATTCAGGAA
GATATGCAGCTTAAGGCAGTTCAAGTGACAGATGATGATGAGCATGACGT
CCtggaaaaagttattaaaaacaCAACATGTGATGGTTTTGAAGAGGATT
CGCCACAATGGCTGCTTTGGCAACAGCAAAAGTTACAAGCGTCCAAGAAA
AACAGCAAAGGAATGCGTTGGCATCCTTTAATCATCAGGTGAGTCAATCC
AAGTCAGTCCTCTACATGCTTTTCCAAAATAATAATCATAAATTATTATC
ATTCCTTACTTTATTATACCTACTGGTTGACAtgagatgaatttttttca
tagagcTTATTCATATTTTGTCAAAGAATTATATTAGTAAATAccttttt
gataatttaaactttttagatTTTCTCAAGCTATTCTGATATCACCTGta
ttaatgttttatttttattttttagatggTGCCTGAGTATTTACCAAACC
TCACCAGCTGCATATAAGCAGattgcaaacaaaaatttgaattttcttcg
ACTACCATGTACAAAGACCTTATACAAATACCTAAACTTCACTGATCTCA
GCACAGGCTTCAATCCAGATATCATAAAGAGACTTGCTGAACAAGCAAAT
GTCTCAAACATGAAAGCAAAAGACAAGCCTGATGTCATAGCATTTGACGA
AATGAAGATCAAAAGCTCATTGGTATATCACAGAGGCTCTGGAAAACTGA
TTGGTTTCACGGAGATGAGTGACCTTAACGACGAGTTCTCACACTTTTTG
CATAATAATGAAGAAACAAACAGCgacaatttcaaatttgaacgTGATTT
GGCAACACATGTTAATCTCTACATGGTTCGTAGAATATGCTCCAATCTCC
TCTACCCTTTTGGATACTTTGCCACTGCTGGGATG Coding sequence (CDS) from alignment at sc0000464:82920..84404+ >TCONS_00023870 ID=TCONS_00023870|Name=TCONS_00023870|organism=Clytia hemisphaerica|type=CDS|length=2496bp|location=Sequence derived from alignment at sc0000464:82920..84404+ (Clytia hemisphaerica)
tttgaagtTATAAATGATATAACTATGACTATTGACTGCAAAAATCAATG
GGAATTACTTGTTCGTGGTAAAAGGCTTCCCAAAAATGAATATCTTCGAA
GATTTTCCCTCACTTTGGAAAATACTGAcacatttattgaatttttccaa
aaacacAGAGTTTGTCCTGGAATATCTGGATATGAAGATGTCATCAAAAG
TAAACTGGATATCAAATATccctttttatcaattaatGGAGACGAAAATG
CAAATGTGGAGAATACATACTATAAGCAGCTCTATCACCTAGAGGATTAT
AGCATAATCAGGCATGTTGATTGTAATCTTATTTTGAACACTGACAGTAA
CAACATAAGTAATGATGAATTGGATGAAATGTGCTCAAAATGTAGGAAGT
ATAAGAATTCTCAACTTACAAAGCAACGGTCAAGACTAAGTGATGAACCA
GAAGCTAAGAGGAAGCGCACCAGTGACACCTCGACAACTAACTCACGTTA
TATGTCTAGAGAAGAGTTGgcagaaaaactgaaaaatgctcaGATGAAAA
AAAGGGAACTTATGAAAAAAGTGAGTAAACTAAATTTCCAAATTCAGGAA
GATATGCAGCTTAAGGCAGTTCAAGTGACAGATGATGATGAGCATGACGT
CCtggaaaaagttattaaaaacaCAACATGTGATGGTTTTGAAGAGGATT
CGCCACAATGGCTGCTTTGGCAACAGCAAAAGTTACAAGCGTCCAAGAAA
AACAGCAAAGGAATGCGTTGGCATCCTTTAATCATCAGatggTGCCTGAG
TATTTACCAAACCTCACCAGCTGCATATAAGCAGattgcaaacaaaaatt
tgaattttcttcgACTACCATGTACAAAGACCTTATACAAATACCTAAAC
TTCACTGATCTCAGCACAGGCTTCAATCCAGATATCATAAAGAGACTTGC
TGAACAAGCAAATGTCTCAAACATGAAAGCAAAAGACAAGCCTGATGTCA
TAGCATTTGACGAAATGAAGATCAAAAGCTCATTGGTATATCACAGAGGC
TCTGGAAAACTGATTGGTTTCACGGAGATGAGTGACCTTAACGACGAGTT
CTCACACTTTTTGCATAATAATGAAGAAACAAACAGCgacaatttcaaat
ttgaacgTGATTTGGCAACACATGTTAATCTCTACATGGTTCGTAGAATA
TGCTCCAATCTCCTCTACCCTTTTGGATACTTTGCCACTGCTGGGATGtt
tgaagtTATAAATGATATAACTATGACTATTGACTGCAAAAATCAATGGG
AATTACTTGTTCGTGGTAAAAGGCTTCCCAAAAATGAATATCTTCGAAGA
TTTTCCCTCACTTTGGAAAATACTGAcacatttattgaatttttccaaaa
acacAGAGTTTGTCCTGGAATATCTGGATATGAAGATGTCATCAAAAGTA
AACTGGATATCAAATATccctttttatcaattaatGGAGACGAAAATGCA
AATGTGGAGAATACATACTATAAGCAGCTCTATCACCTAGAGGATTATAG
CATAATCAGGCATGTTGATTGTAATCTTATTTTGAACACTGACAGTAACA
ACATAAGTAATGATGAATTGGATGAAATGTGCTCAAAATGTAGGAAGTAT
AAGAATTCTCAACTTACAAAGCAACGGTCAAGACTAAGTGATGAACCAGA
AGCTAAGAGGAAGCGCACCAGTGACACCTCGACAACTAACTCACGTTATA
TGTCTAGAGAAGAGTTGgcagaaaaactgaaaaatgctcaGATGAAAAAA
AGGGAACTTATGAAAAAAGTGAGTAAACTAAATTTCCAAATTCAGGAAGA
TATGCAGCTTAAGGCAGTTCAAGTGACAGATGATGATGAGCATGACGTCC
tggaaaaagttattaaaaacaCAACATGTGATGGTTTTGAAGAGGATTCG
CCACAATGGCTGCTTTGGCAACAGCAAAAGTTACAAGCGTCCAAGAAAAA
CAGCAAAGGAATGCGTTGGCATCCTTTAATCATCAGatggTGCCTGAGTA
TTTACCAAACCTCACCAGCTGCATATAAGCAGattgcaaacaaaaatttg
aattttcttcgACTACCATGTACAAAGACCTTATACAAATACCTAAACTT
CACTGATCTCAGCACAGGCTTCAATCCAGATATCATAAAGAGACTTGCTG
AACAAGCAAATGTCTCAAACATGAAAGCAAAAGACAAGCCTGATGTCATA
GCATTTGACGAAATGAAGATCAAAAGCTCATTGGTATATCACAGAGGCTC
TGGAAAACTGATTGGTTTCACGGAGATGAGTGACCTTAACGACGAGTTCT
CACACTTTTTGCATAATAATGAAGAAACAAACAGCgacaatttcaaattt
gaacgTGATTTGGCAACACATGTTAATCTCTACATGGTTCGTAGAATATG
CTCCAATCTCCTCTACCCTTTTGGATACTTTGCCACTGCTGGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023870-exon-sc0000464-1491911889:82920..83707 | TCONS_00023870-exon-sc0000464-1491911889:82920..83707 | Clytia hemisphaerica | exon |
| TCONS_00023870-exon-sc0000464-1510915933:82920..83707 | TCONS_00023870-exon-sc0000464-1510915933:82920..83707 | Clytia hemisphaerica | exon |
| TCONS_00023870-exon-sc0000464-1575043694:82920..83707 | TCONS_00023870-exon-sc0000464-1575043694:82920..83707 | Clytia hemisphaerica | exon |
| TCONS_00023870-exon-sc0000464-1491911889:83945..84404 | TCONS_00023870-exon-sc0000464-1491911889:83945..84404 | Clytia hemisphaerica | exon |
| TCONS_00023870-exon-sc0000464-1510915933:83945..84404 | TCONS_00023870-exon-sc0000464-1510915933:83945..84404 | Clytia hemisphaerica | exon |
| TCONS_00023870-exon-sc0000464-1575043694:83945..84404 | TCONS_00023870-exon-sc0000464-1575043694:83945..84404 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000464 | supercontig | sc0000464:82920..84404 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021896 | Transposase_37 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004803 | transposase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006313 | transposition, DNA-mediated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0004803 |
transposase activity |
Blast
The following BLAST results are available for this feature:
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