TCONS_00024292 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024292
Unique NameTCONS_00024292
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024292 ID=TCONS_00024292|Name=TCONS_00024292|organism=Clytia hemisphaerica|type=transcript|length=1084bp
GGAAATTTAAAATAAAGTCATAAATAAACCATTATcattaataaaatata
aaaaactcgTAAAATATCGACCATATTTGTCGCACTTCCTCATGTCCTAA
ACTGTATAAAAGGGTTGctaaaatctagaaaatcatCTTCAAGTTCATTT
GCTTCAGAAGAACACACAATCACTCACAAATATGAAGATTTGGAAGGCTT
TGTTACTCGTCTCCTTCTTGGTGTACACAGTTCACTGTGAAACAGAAGAA
GAGACAAAGGGAGCAGAAATTGCTGAAGATGAACCTCTCCAAGTGGAAAT
GAGTGATGAAGAAGCAAATAAATTGGAAGATGCACCagaagaagaacaaa
aagaCGAAGAAGAATCTGATGAACAAGCTGATGAAGAAGaacatgaagat
gaagaagaagattcACAAGATGTCGAACAACAAGACAGTGATGAAGATGC
ATCTTACAGAAGACGGATCTCCAGAAAAGTCATCTTCCGATTCAGGAACA
GACGTGACCAATGTCGAACAAGCCGCCGTAACCTCAAATGCTTCACTCGC
CGTCATTGCGTCAGACGTGATTACCGAAAACGATGCCTCCGAGTTTTGGT
TGTCAGAAAATGTGTTGTCCGATTCACTCTCAACTGCAGAATTTGCAGCC
AATCCTACGTCCGAACCTGTTACCGTGTCCGTGTCAAATATGGTTACGGA
ATCAAGTGCTACAACAGCCGTAACGTCACACGGTGTCGCCGCAGAAACGT
CCGTAGCTACAACAGAACACTTGTTGTCTACAAACGATACTACAACATCC
gcccaaaatattaaaatactgaaaatgaaCACTGACTGGAAATGGAAACG
CCCTACCGtacaattttcttattttttaaaatataattttgaacaTAAAC
CCCATTGTATTTAGTAAGCTTACTTGAATAAATAGATTTCTTAAAAGGGA
AAATAACTAGAATTTCAAAACTCCCGTTGTTTCGATTTTGATTGAATTCA
ATATTCAGGACTTAACTTCAAAAGAAATTAATGGCACAGGGAGAACAAAT
TAGGGCCAATTCATTATCATTAGCAAGAAAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000486:148488..149862-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024292 ID=TCONS_00024292|Name=TCONS_00024292|organism=Clytia hemisphaerica|type=transcript|length=1375bp|location=Sequence derived from alignment at sc0000486:148488..149862- (Clytia hemisphaerica)
GGAAATTTAAAATAAAGTCATAAATAAACCATTATCATTAATAAAATATA
AAAAACTCGTAAAATATCGACCATATTTGTCGCACTTCCTCATGTCCTAA
ACTGTATAAAAGGGTTGCTAAAATCTAGAAAATCATCTTCAAGTTCATTT
GCTTCAGAAGAACACACAATCACTCACAAATATGAAGATTTGGAAGGCTT
TGTTACTCGTCTCCTTCTTGGTGTACACAGTTCACTGTGAAACAGAAGAA
GAGACAAAGGGAGCAGAAATTGCTGAAGATGAACCTCTCCAAGTGGAAAT
GAGTGATGAAGAAGCAAATAAATTGGAAGATGCACCAGAAGAAGAACAAA
AAGACGAAGAAGAATCTGATGAACAAGCTGATGAAGAAGAACATGAAGAT
GAAGAAGAAGATTCACAAGATGTCGAACAACAAGACAGTGGTAAGTTTCA
ATTCTTTATTTATCTTCTCTTTGATTGTATAAGCCCTTGCCACATCAATT
GTCATGTTTGTCTATAATAAAGGAAAGGATCCAAGAAATCCTTGCCAATA
ATTTGTCAACTAATACTTGTTAAACATTTTGTTGATAAAATGTATTCACN
AACATCTTGCCACATCAATTGTCATGTTTGTCTGTAATAAGGGAGAGGAT
CCAAGAAATTCTTGCCAATAATTTGTCAACTAATACTTGTTAAAGCATTT
TGTTGATAAAATGTATTCACGTCTTTTTCAGATGAAGATGCATCTTACAG
AAGACGGATCTCCAGAAAAGTCATCTTCCGATTCAGGAACAGACGTGACC
AATGTCGAACAAGCCGCCGTAACCTCAAATGCTTCACTCGCCGTCATTGC
GTCAGACGTGATTACCGAAAACGATGCCTCCGAGTTTTGGTTGTCAGAAA
ATGTGTTGTCCGATTCACTCTCAACTGCAGAATTTGCAGCCAATCCTACG
TCCGAACCTGTTACCGTGTCCGTGTCAAATATGGTTACGGAATCAAGTGC
TACAACAGCCGTAACGTCACACGGTGTCGCCGCAGAAACGTCCGTAGCTA
CAACAGAACACTTGTTGTCTACAAACGATACTACAACATCCGCCCAAAAT
ATTAAAATACTGAAAATGAACACTGACTGGAAATGGAAACGCCCTACCGT
ACAATTTTCTTATTTTTTAAAATATAATTTTGAACATAAACCCCATTGTA
TTTAGTAAGCTTACTTGAATAAATAGATTTCTTAAAAGGGAAAATAACTA
GAATTTCAAAACTCCCGTTGTTTCGATTTTGATTGAATTCAATATTCAGG
ACTTAACTTCAAAAGAAATTAATGGCACAGGGAGAACAAATTAGGGCCAA
TTCATTATCATTAGCAAGAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013633XLOC_013633Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024292-exon-sc0000486-1575043694:149423..149862TCONS_00024292-exon-sc0000486-1575043694:149423..149862Clytia hemisphaericaexon
TCONS_00024292-exon-sc0000486-1575043694:148488..149131TCONS_00024292-exon-sc0000486-1575043694:148488..149131Clytia hemisphaericaexon
TCONS_00024292-exon-sc0000486-1510915933:149423..149862TCONS_00024292-exon-sc0000486-1510915933:149423..149862Clytia hemisphaericaexon
TCONS_00024292-exon-sc0000486-1510915933:148488..149131TCONS_00024292-exon-sc0000486-1510915933:148488..149131Clytia hemisphaericaexon
TCONS_00024292-exon-sc0000486-1491911889:149423..149862TCONS_00024292-exon-sc0000486-1491911889:149423..149862Clytia hemisphaericaexon
TCONS_00024292-exon-sc0000486-1491911889:148488..149131TCONS_00024292-exon-sc0000486-1491911889:148488..149131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000486supercontigsc0000486:148488..149862 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18776	0.813459	0.174423	0.175365	0.546785	0.573339	0.239265	0.0916344	0.0684034	0.265779	0.328628	0	97.8875	138.158	3408.69	496.783	2.54101	1.05397	1.15028	1.13454	0	0	0.150183	0	0.261195	0.0729511	0.129725	0.178003	0	0.0458508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024292 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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