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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024648 ID=TCONS_00024648|Name=TCONS_00024648|organism=Clytia hemisphaerica|type=transcript|length=2035bp
aaaaaatttcataacacGTAAGAGTCATCACTTTTTCCGTTCACCCTCTG
TATGTTTACATTGATCTTTCACTACTTTTTAATGAGTCTTATTAATCATG
TTCTTGTGACGTCACTTCACGTGATTCGAACATGAGCACccatttcaaaa
aagttctGCAAAATAACAAGGGAGATATAATACGTTccgaaaaataaact
ttgagAAAAAACAGAATGCTCGGAAGCTTGGAAACTAGTTTTGaacgcat
aatttatgcaaaaaagACGTCATATTTAATTTATGCACtcttaatttcaa
aacaaaaacaatgttTATCCGCGGATTAACTTACTAAGAAATAGTTCGAA
GTAAGACTTATATTTCGATGAATAAAAGTGTGCCACCAGTTTCGGAAAGA
TCATGTATAATGATTTCGTAAACATCAAGAAGTAGGATATATCTGCACTG
CAATTGGATTCAAGTCATAAGACAGAGCAGCAGAAAGGCACTGAGAGATA
ATAATAAATACTTATTaaaagtttgaatttgaattaaaatCTTGTATAAG
AtttaaagaaaacttaaaatggaTGAGTTTTTAAACAAACACATTCAAGA
AATCATTGCAAATGATAGCAAATCACAACTGAATTTTTCAACTGCATTGA
CTTTTGATAATTTGGATTGGTTTTCTCCTGATGAGCTTTTCGATGGAAAC
CCAGAATCTGAGAATTCTCCAGTAAATGTGGAACAGGACTTCCACCATCA
ACAGAACATAAACACCAACAACTTATACCCTTCACCACAACGCTTATATT
CCTCCAGCTCATCTACAACATCATCAGTTTATTCTGCAAGTGAAATCAGC
GAGCGTTCACCACCATCACCTCCATCACCAACTATTCCACCTTTGATTCA
ACACCAACCATCACCACCGCATCAACAACCTAAAATTAAATGCCCCACAC
CGCCACAACCCATGGAAGAAGAAGATATCAAACCAAATCCAGAAGCTCTT
AACTCAATGATTGATGTTGAATCTTTTAAAACATTACAAAAACTTCATAA
TATTCCAACTGTTTCAAGTATTGAAGAacttcaaaaatatcaaaaacttg
gTGTTCCTGCTTTACTACTATTTTATCCACAAAAAAACACAACAGATTCC
ACAACGAAAGAGGAGGataaaaacaaattgaaaacgCCAGAAGATTTATT
TAAGAACACTAAAAAAATCCCAGTATTGAACGTTTCTGGTGATGTTATCA
AAATAGAACCAAAGTCACcaaaagaaacaacaaaaacaaccaCCACAGCA
AATGAAGACACTCGGGAAAGGATTCATGTATGTCCTTACCCAAATTGCGA
TAAAACCTATTTCAAGAACTCGCATCTGAAAACTCACATCAGATCCCATA
CTGGAGAGAAACCATTCAAATGTGTTTGGCCTGATTGCGACAGATCATTC
GCACGCTCTGACGAACTTGCAAGACATAAACGATCACACACaggagaaag
aaaatttgaatgcCCATTATGTTCAAGGAAATTCATGCGATCGGACCATC
TCACAAAACATGCAAAACGACACATGCAAGCCAAGAAAATCCCTGGCTGG
CAAAGAGAGATTAACAAGTTGAACGAAATGGCTTCTGTTACATACCAATA
CCCCAGCATCATCTCTGAACAAACTATGTCCAGGAATAAAATGCAGATAG
AATAATTTCCAAGAGACATTTAGAAAGATgcattatttttataaatataa
aaagaaaattttcatttattttggtttgtttttattctaacttttttaac
aaatttgtcTACTTTCTTTGTAAACAAATACTGTAAATATCTTTATAGAA
ATTGTAAATATCTTTGGTGTACTATATTTCAACGGAAGTGGactttatat
ataaaatttgacACAGGAAAAATTACACATAAACAAACTCTTTATTTTTG
TTCTGTCTTCATGACTCTTCTGattttctaaaagtttttgtttttcaact
gtcgtccaaacatcaaaatttgttttcataatAAG Run BLAST on NCBI transcript from alignment at sc0000506:58836..61521- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024648 ID=TCONS_00024648|Name=TCONS_00024648|organism=Clytia hemisphaerica|type=transcript|length=2686bp|location=Sequence derived from alignment at sc0000506:58836..61521- (Clytia hemisphaerica)
AAAAAATTTCATAACACGTAAGAGTCATCACTTTTTCCGTTCACCCTCTG
TATGTTTACATTGATCTTTCACTACTTTTTAATGAGTCTTATTAATCATG
TTCTTGTGACGTCACTTCACGTGATTCGAACATGAGCACCCATTTCAAAA
AAGTTCTGCAAAATAACAAGGGAGATATAATACGTTCCGAAAAATAAACT
TTGAGAAAAAACAGAATGCTCGGAAGCTTGGAAACTAGTTTTGAACGCAT
AATTTATGCAAAAAAGACGTCATATTTAATTTATGCACTCTTAATTTCAA
AACAAAAACAATGTTTATCCGCGGATTAACTTACTAAGAAATAGTTCGAA
GTAAGACTTATATTTCGATGAATAAAAGTGTGCCACCAGTTTCGGAAAGA
TCATGTATAATGATTTCGTAAACATCAAGAAGTAGGATATATCTGCACTG
CAATTGGATTCAAGTCATAAGACAGAGCAGCAGAAAGGCACTGAGAGATA
ATAATAAATACTTATTAAAAGTTTGAATTTGAATTAAAATCTTGTATAAG
ATTTAAAGAAAACTTAAAATGGATGAGTTTTTAAACAAACACATTCAAGA
AATCATTGCAAATGATAGCAAATCACAACTGAATTTTTCAACTGCATTGA
CTTTTGATAATTTGGATTGGTTTTCTCCTGATGAGCTTTTCGATGGAAAC
CCAGAATCTGAGGTTGGTTTCAAAATCCATTGTATGTAGCTAGATGATGA
CACTTGATTAATAGAAATTAATCTAATTCATATCCAAACTGATCTATAAT
CATCCTTTTTACTCCTTTATCTTTCAGAATTCTCCAGTAAATGTGGAACA
GGACTTCCACCATCAACAGAACATAAACACCAACAACTTATACCCTTCAC
CACAGCGCTTATATTCCTCCAGCTCATCTACAACATCATCAGTTTATTCT
GCAAGTGAAATCAGCGAGCGTTCACCACCANAAAATGGATGAGTTTTTAA
ACAAACACATTCAAGAAATCATTGCAAATGATAGCAAATCACAACTGAAT
TTTTCAACTGCATTGACTTTTGATAATTTGGATTGGTTTTCTCCTGATGA
GCTTTTCGATGGAAACCCAGAATCTGAGGTTGGTTTCAAAATCCATTGTA
TATAGCTAGATAATGACACTTGATTAATAGAAATTAATCTAATTCATATC
CAAACTGATCTATAATCTAAACTCCTTTATCTTTCAGAATTCTCCAGTAA
ATGTGGAACAGGACTTCCACCATCAACAGAACATAAACACCAACAACTTA
TACCCTTCACCACAACGCTTATATTCCTCCAGCTCATCTACAACATCATC
AGTTTATTCTGCAAGTGAAATCAGCGAGCGTTCACCACCATCACCTCCAT
CACCAACTATTCCACCTTTGATTCAACACCAACCATCACCACCGCATCAA
CAACCTAAAATTAAATGCCCCACACCGCCACAACCCATGGAAGAAGAAGA
TATCAAACCAAATCCAGAAGCTCTTAACTCAATGATTGATGTTGAATCTT
TTAAAACATTACAAAAACTTCATAATATTCCAACTGTTTCAAGTATTGAA
GAACTTCAAAAATATCAAAAACTTGGTGTTCCTGCTTTACTACTATTTTA
TCCACAAAAAAACACAACAGATTCCACAACGAAAGAGGAGGATAAAAACA
AATTGAAAACGCCAGAAGATTTATTTAAGAACACTAAAAAAATCCCAGTA
TTGAACGTTTCTGGTGATGTTATCAAAATAGAACCAAAGTCACCAAAAGA
AACAACAAAAACAACCACCACAGCAAATGAAGACACTCGGGAAAGGATTC
ATGTATGTCCTTACCCAAATTGCGATAAAACCTATTTCAAGAACTCGCAT
CTGAAAACTCACATCAGATCCCATACTGGTAAGCATCTCTTTATTTATTT
TGGCATTCCTCTGCAAACATTTCAGTTCTCTCATTTCACATATACAGTAG
TTACAACCAAAATTATGTGGTATTAATTTTCTTTTTTCTTTTTTTGTTCT
TCAGGAGAGAAACCATTCAAATGTGTTTGGCCTGATTGCGACAGATCATT
CGCACGCTCTGACGAACTTGCAAGACATAAACGATCACACACAGGAGAAA
GAAAATTTGAATGCCCATTATGTTCAAGGAAATTCATGCGATCGGACCAT
CTCACAAAACATGCAAAACGACACATGCAAGCCAAGAAAATCCCTGGCTG
GCAAAGAGAGATTAACAAGTTGAACGAAATGGCTTCTGTTACATACCAAT
ACCCCAGCATCATCTCTGAACAAACTATGTCCAGGAATAAAATGCAGATA
GAATAATTTCCAAGAGACATTTAGAAAGATGCATTATTTTTATAAATATA
AAAAGAAAATTTTCATTTATTTTGGTTTGTTTTTATTCTAACTTTTTTAA
CAAATTTGTCTACTTTCTTTGTAAACAAATACTGTAAATATCTTTATAGA
AATTGTAAATATCTTTGGTGTACTATATTTCAACGGAAGTGGACTTTATA
TATAAAATTTGACACAGGAAAAATTACACATAAACAAACTCTTTATTTTT
GTTCTGTCTTCATGACTCTTCTGATTTTCTAAAAGTTTTTGTTTTTCAAC
TGTCGTCCAAACATCAAAATTTGTTTTCATAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024648-exon-sc0000506-1575043694:60810..61521 | TCONS_00024648-exon-sc0000506-1575043694:60810..61521 | Clytia hemisphaerica | exon |
| TCONS_00024648-exon-sc0000506-1575043694:60650..60694 | TCONS_00024648-exon-sc0000506-1575043694:60650..60694 | Clytia hemisphaerica | exon |
| TCONS_00024648-exon-sc0000506-1575043694:59594..60239 | TCONS_00024648-exon-sc0000506-1575043694:59594..60239 | Clytia hemisphaerica | exon |
| TCONS_00024648-exon-sc0000506-1575043694:58836..59467 | TCONS_00024648-exon-sc0000506-1575043694:58836..59467 | Clytia hemisphaerica | exon |
| TCONS_00024648-exon-sc0000506-1510915933:60810..61521 | TCONS_00024648-exon-sc0000506-1510915933:60810..61521 | Clytia hemisphaerica | exon |
| TCONS_00024648-exon-sc0000506-1510915933:60650..60694 | TCONS_00024648-exon-sc0000506-1510915933:60650..60694 | Clytia hemisphaerica | exon |
| TCONS_00024648-exon-sc0000506-1510915933:59594..60239 | TCONS_00024648-exon-sc0000506-1510915933:59594..60239 | Clytia hemisphaerica | exon |
| TCONS_00024648-exon-sc0000506-1510915933:58836..59467 | TCONS_00024648-exon-sc0000506-1510915933:58836..59467 | Clytia hemisphaerica | exon |
| TCONS_00024648-exon-sc0000506-1491911889:60810..61521 | TCONS_00024648-exon-sc0000506-1491911889:60810..61521 | Clytia hemisphaerica | exon |
| TCONS_00024648-exon-sc0000506-1491911889:60650..60694 | TCONS_00024648-exon-sc0000506-1491911889:60650..60694 | Clytia hemisphaerica | exon |
| TCONS_00024648-exon-sc0000506-1491911889:59594..60239 | TCONS_00024648-exon-sc0000506-1491911889:59594..60239 | Clytia hemisphaerica | exon |
| TCONS_00024648-exon-sc0000506-1491911889:58836..59467 | TCONS_00024648-exon-sc0000506-1491911889:58836..59467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:58836..61521 - |
Blast
BLAST of TCONS_00024648 vs. Swiss-Prot (Human)
Match: KLF11 (Krueppel-like factor 11 OS=Homo sapiens GN=KLF11 PE=1 SV=2) HSP 1 Score: 182.57 bits (462), Expect = 1.112e-49 Identity = 75/110 (68.18%), Postives = 91/110 (82.73%), Query Frame = 2
Query: 1310 TRERIHVCPYPNCDKTYFKNSHLKTHIRSHTGEKPFKCVWPDCDRSFARSDELARHKRSHTGERKFECPLCSRKFMRSDHLTKHAKRHMQAKKIPGWQREINKLNEMASV 1639
+R R +VC +P C KTYFK+SHLK H+R+HTGEKPF C W CD+ FARSDEL+RH+R+HTGE+KF CP+C R+FMRSDHLTKHA+RHM KKIPGWQ E+ KLN +AS
Sbjct: 389 SRRRNYVCSFPGCRKTYFKSSHLKAHLRTHTGEKPFNCSWDGCDKKFARSDELSRHRRTHTGEKKFVCPVCDRRFMRSDHLTKHARRHMTTKKIPGWQAEVGKLNRIASA 498
The following BLAST results are available for this feature:
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