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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024733 ID=TCONS_00024733|Name=TCONS_00024733|organism=Clytia hemisphaerica|type=transcript|length=2339bp
TGGAAGGTCACGCATTCGCTTTCAATTTCAACAGAGAATAAAAcgtaaat
aaataaacaaacaagatGGCGGGTACGTTCAAAGCTAGATCACAACATCC
CATGGGATCACTGAGAACATTATCAGGACTCATCATGATGGTCAATTTCC
TTCTCCTCTTGATGTCGGCGCTCATTTCACTAACATGGCGTACGAACGCG
CGACATTACCCTGAACGATATTTCGACGATTTAAAAGACAAATGGGCGTA
CCACATTGCAGCATTGGCGGTACCAGTGGGCGGCTATCTTCTTATTCAAT
TCATTTCGACGTGTTGTTgtgattgcaaaaattttcgaggATTGGCGGAT
ATTTTGATGATGTTGCTTTGTTTGGTGTTTGGCGCCTTAATCATCGTCAG
CGGAGTTTTTCTACAAATGGCGCTCCATGATAGAGACTGCTTCCAACAAC
GAAATTGTCAACAACTCAGGGCATCTATTATAATTGGTTACGTATCGTCG
GCTTTTCTTTTTGCAGAATCTTTCTTCCATTTATCAGAGAAAAACATCGT
AATGAACGTCGTATGATATCTGTTCGCTTCCGCTAAGCGTGCACAAAATG
AGAGGCTCAAAAAAGAGGTGTTTTCTATTTCCTTCAGAGGCAGTGAAAGG
GTGCTGAGTATGTGCGCGTGCCTAAAGGATCGAATTTTTCACTTTGTCAA
AGCAAAATCTTTCGTCAGAGACGTAAAATGCATTTCACACAGCAAATGAG
CGTATATTCTAGAAATGTTGGTGAATTATACAGAATTTCGAAACGGAAGA
GACCGTCTCACTGGATCGGAAAAGCTTCACTCTGTCCGTAAGGGTTAACA
GAACGGGCAAAAGTAGTATCTCttccgttttttttttgctttagcaAGTC
AAAAATGACACATCTTCAAGAAAAGGATTTTTTTAATAGTAGAAATCCTC
CAAGaaagttttgtgaaaaagtctctGGTCAGGGAGATTCGGCACGTACA
TTAACATCCCCATCCCGTTAATCCCCGGGTAATTCTCACGTTTGTGaact
ttgaattttcttttcgcGAAAGGGAACAGATATTTCACTCGAGTGCTCAT
GCTTTCTGATGAATGGATGTCACGCTCAGCCCTGGTTTGAAAAAAGAACA
CTTTGGATGACAATCGAATTTTTTGCaggacaaaaaaaaaacatttttta
taattaGTTGATTTATATGTACATTAATTATTATTATCGCTGTTGATATA
AAGCTGAATACAAAACTATTTCacaaagtttgaaaatgaaaatgttacgT
GTCAAAAGCCGGACTTTGAAAAGCCAGAGGACCTGGCTGCTCTGACCTTC
TACGTTGTTGACGAGAGAGCCAGATAACGCCTCTTCTAGCAGCATTACAA
AAATATCAGGTtttaaattgatgaaaaaaaaccTAATGAGCACCGCACCC
AAAAAGCTTGAGATTCTGTAGCCATAATGGATCATTCTATAtcttcgtcc
accctcactttaaggatgaaaattttttccaaggtttctttgtaaatttt
gccattttccaggaggtaaccacacattttcaaaaattatttttttcttg
aaaaggttCATATTGATTTTAAATGGAACAACCCAATACACGTCAAATCA
GATGTTTTCCGTAGGAGTTTTTAATAAGGAAAGTAAAACAAAACCATTGA
GATTGGAtcaatttttagcatgaaaAGTGGCAAAGAAACGAAACCATGAC
AGTAAAAATAGCGTTGTTTGGTAGAACTCAAGGGGTTTGCCCTCAAAAGA
TCGCCCCACCTAAAACCTTGAAAATATAATGACCTTATTTGAGGAAACAC
GTTAAgcagtttataaaaaaataatcatcaaGAGTTTTGTTCCAATGCAC
TCCTCTTCTAAGTCGAACGTTAAAACCGCACTTAACCCTATTTTCTAGTA
GTTCaacttttgccaaaaaaaatgtTGACTGATTTTTCGTAACCATGTAG
GCACAGTAAACGAGGTAATAAAAGTCACTGTATGAAAACAGGGGCTAAAG
TAACCTACCATTAAATTTCTAGTATCACCTCTCTAATCAAACCCAAACAC
TGCTTTTCTTTTGACCACTAAACAATAAAAAGTAAAGTTTAAGTTTGTCT
CGCTTTCCCAGCTAGCGTCATATCTTTCACCTCAGTAGTCTGGCTGAACA
AGTCCAACGTGACGGCCGACAAAAATGCCGGGATCGAATCTCCTTTTTGA
ATATAGTCGTTGAACAAGGGACGCCATTCCCGGGCGTATTCCGTCTCTGC
CATCCCTGCTTCGGTCACGCCCTCTTTGTTTTTGGCACA Run BLAST on NCBI protein sequence of TCONS_00024733-protein >TCONS_00024733-protein ID=TCONS_00024733-protein|Name=TCONS_00024733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MAGTFKARSQHPMGSLRTLSGLIMMVNFLLLLMSALISLTWRTNARHYPE
RYFDDLKDKWAYHIAALAVPVGGYLLIQFISTCCCDCKNFRGLADILMML
LCLVFGALIIVSGVFLQMALHDRDCFQQRNCQQLRASIIIGYVSSAFLFA
ESFFHLSEKNIVMNVV Run BLAST on NCBI transcript from alignment at sc0000509:168980..172735+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024733 ID=TCONS_00024733|Name=TCONS_00024733|organism=Clytia hemisphaerica|type=transcript|length=3756bp|location=Sequence derived from alignment at sc0000509:168980..172735+ (Clytia hemisphaerica)
TGGAAGGTCACGCATTCGCTTTCAATTTCAACAGAGAATAAAAcgtaaat
aaataaacaaacaagatGGCGGGTACGTTCAAAGCTAGATCACAACATCC
CATGGGATCACTGAGAACATTATCAGGACTCATCATGATGGTCAATTTCG
TAAGTTCTTCACCCTCGACTATTCTTTATTGATGTTCTAAGTCACTTCGT
GTGAAAAGAATTAGaaatgcttaaaaaagcttaactaactGATAACAATT
TAATTTCGTAAAATATGGTAAATTCACCCCAGTAAAAAAAATCGTAGTGT
CTTTTTTCCGTTAAAATAGCAATTCGTGATCTAATAACATCACCACTAAA
ATATTTCTCCAAATGCAATGACAAATTCCTTACCCTCTCTTTTAGCTTCT
CCTCTTGATGTCGGCGCTCATTTCACTAACATGGCGTACGAACGCGCGAC
ATTACCCTGAACGATATTTCGACGATTTAAAAGACAAATGGGCGTACCAC
ATTGCAGCATTGGCGGTACCAGTGGGCGGCTATCTTCTTATTCAATTCAT
TTCGACGTGTTGTTgtgattgcaaaaattttcgaggATTGGCGGATATTT
TGGTAAGTCAGGAGACGATGCATATTGGGTACTCTGGGATGTCTAATAAA
AGGGAAAATGGGGGCTTTTTTGATGGCCGGACTGGATGGCACGATGAAAT
AACTTGGGAGTACAGTATAAAACATGTATCAATGAGATCGTTTAAATGCT
ATAAATCTGGCCAGGTTGTTGGCGCACCACCTTGAATCTTTCTTATCCAG
ACATTTTGCATGCATATTAAATGATCTTTTGAGCGCagtgattggctaaa
gcaaaacaatggcACCAAAATCAAAAACCAATCCATAGTATTGAGGCCAA
TCGTAACCATAagattagaacccagtcgctttcaatttcgatttcaaGTA
AAAAGCAAcgcggttttaaatgttttggctgaacaaTCTGGTCAGATCAT
CACATTCGCCATTTCCCTTTCTCTCTAGATGATGTTGCTTTGTTTGGTGT
TTGGCGCCTTAATCATCGTCAGCGGAGTTTTTCTACAAATGGCGCTCCAT
GATAGAGACTGCTTCCAACAACGAAATTGTCAACAACTCAGGGCATCTAT
TGTGAGTCATTAAATTATTACGTCCAAAATATTAATTAATCATTTGACCA
CGTCTTAAGCGTATATATTTTCGCGGGTACTAAATTTTCGCTTGTACTTA
ATTTTGCGTGTTTTAAGGCAAAATTTCGCTTAATAAACacgaaaaatttt
cgaaatagaAGAGAGAATTAATTTTTTAAGGGATCAGTgatattttgtta
caatttgGATACTATTTTTGCATGTAATATTGTGTGCTTCAAGTGAAATA
agtatttttcttgttttgaccattttcttGAAAGATATCCAATTAAGTGG
ATCTCGAAATTTAATTTTAACACACGCAAAAATTTCCAGGAAGTAGCGAT
CACAAATTTAGTActaaaaaatttcacaattcGTGAAAGCTTAGTACCTG
CGAAAATATATACATTTAAGGTAGAATGCTCTTAGAATTGGTTTAGTTTG
ATCTGCCATTCAGGCTAGTTCACCGAAAAAAGATTGACAGACTAGAAAAA
CAAGCCTATTCGCTCTCCGTTGGGAACGTTTacttgggacaagctggagt
ttttacaagctcttatttgatttggttggtcgttaagatgtaataaaaga
atcttattacatTTTCTAGAGAACGCGTCatttctatcactttaaataac
caattagtgaagtatcttgtaaaaactccagctcatcccttaGATTGATC
ATAGCGAGTAACTTCAGCCTTGCTAAAATGTCGTTTTTCATTTTAGATAA
TTGGTTACGTATCGTCGGCTTTTCTTTTTGCAGAATCTTTCTTCCATTTA
TCAGAGAAAAACATCGTAATGAACGTCGTATGATATCTGTTCGCTTCCGC
TAAGCGTGCACAAAATGAGAGGCTCAAAAAAGAGGTGTTTTCTATTTCCT
TCAGAGGCAGTGAAAGGGTGCTGAGTATGTGCGCGTGCCTAAAGGATCGA
ATTTTTCACTTTGTCAAAGCAAAATCTTTCGTCAGAGACGTAAAATGCAT
TTCACACAGCAAATGAGCGTATATTCTAGAAATGTTGGTGAATTATACAG
AATTTCGAAACGGAAGAGACCGTCTCACTGGATCGGAAAAGCTTCACTCT
GTCCGTAAGGGTTAACAGAACGGGCAAAAGTAGTATCTCttccgtttttt
ttttgctttagcaAGTCAAAAATGACACATCTTCAAGAAAAGGATTTTTT
TAATAGTAGAAATCCTCCAAGaaagttttgtgaaaaagtctctGGTCAGG
GAGATTCGGCACGTACATTAACATCCCCATCCCGTTAATCCCCGGGTAAT
TCTCACGTTTGTGaactttgaattttcttttcgcGAAAGGGAACAGATAT
TTCACTCGAGTGCTCATGCTTTCTGATGAATGGATGTCACGCTCAGCCCT
GGTTTGAAAAAAGAACACTTTGGATGACAATCGAATTTTTTGCaggacaa
aaaaaaaacattttttataattaGTTGATTTATATGTACATTAATTATTA
TTATCGCTGTTGATATAAAGCTGAATACAAAACTATTTCacaaagtttga
aaatgaaaatgttacgTGTCAAAAGCCGGACTTTGAAAAGCCAGAGGACC
TGGCTGCTCTGACCTTCTACGTTGTTGACGAGAGAGCCAGATAACGCCTC
TTCTAGCAGCATTACAAAAATATCAGGTtttaaattgatgaaaaaaaacc
TAATGAGCACCGCACCCAAAAAGCTTGAGATTCTGTAGCCATAATGGATC
ATTCTATAtcttcgtccaccctcactttaaggatgaaaattttttccaag
gtttctttgtaaattttgccattttccaggaggtaaccacacattttcaa
aaattatttttttcttgaaaaggttCATATTGATTTTAAATGGAACAACC
CAATACACGTCAAATCAGATGTTTTCCGTAGGAGTTTTTAATAAGGAAAG
TAAAACAAAACCATTGAGATTGGAtcaatttttagcatgaaaAGTGGCAA
AGAAACGAAACCATGACAGTAAAAATAGCGTTGTTTGGTAGAACTCAAGG
GGTTTGCCCTCAAAAGATCGCCCCACCTAAAACCTTGAAAATATAATGAC
CTTATTTGAGGAAACACGTTAAgcagtttataaaaaaataatcatcaaGA
GTTTTGTTCCAATGCACTCCTCTTCTAAGTCGAACGTTAAAACCGCACTT
AACCCTATTTTCTAGTAGTTCaacttttgccaaaaaaaatgtTGACTGAT
TTTTCGTAACCATGTAGGCACAGTAAACGAGGTAATAAAAGTCACTGTAT
GAAAACAGGGGCTAAAGTAACCTACCATTAAATTTCTAGTATCACCTCTC
TAATCAAACCCAAACACTGCTTTTCTTTTGACCACTAAACAATAAAAAGT
AAAGTTTAAGTTTGTCTCGCTTTCCCAGCTAGCGTCATATCTTTCACCTC
AGTAGTCTGGCTGAACAAGTCCAACGTGACGGCCGACAAAAATGCCGGGA
TCGAATCTCCTTTTTGAATATAGTCGTTGAACAAGGGACGCCATTCCCGG
GCGTATTCCGTCTCTGCCATCCCTGCTTCGGTCACGCCCTCTTTGTTTTT
GGCACA Coding sequence (CDS) from alignment at sc0000509:168980..172735+ >TCONS_00024733 ID=TCONS_00024733|Name=TCONS_00024733|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at sc0000509:168980..172735+ (Clytia hemisphaerica)
atGGCGGGTACGTTCAAAGCTAGATCACAACATCCCATGGGATCACTGAG
AACATTATCAGGACTCATCATGATGGTCAATTTCCTTCTCCTCTTGATGT
CGGCGCTCATTTCACTAACATGGCGTACGAACGCGCGACATTACCCTGAA
CGATATTTCGACGATTTAAAAGACAAATGGGCGTACCACATTGCAGCATT
GGCGGTACCAGTGGGCGGCTATCTTCTTATTCAATTCATTTCGACGTGTT
GTTgtgattgcaaaaattttcgaggATTGGCGGATATTTTGATGATGTTG
CTTTGTTTGGTGTTTGGCGCCTTAATCATCGTCAGCGGAGTTTTTCTACA
AATGGCGCTCCATGATAGAGACTGCTTCCAACAACGAAATTGTCAACAAC
TCAGGGCATCTATTATAATTGGTTACGTATCGTCGGCTTTTCTTTTTGCA
GAATCTTTCTTCCATTTATCAGAGAAAAACATCGTAATGAACGTCGTATG
AatGGCGGGTACGTTCAAAGCTAGATCACAACATCCCATGGGATCACTGA
GAACATTATCAGGACTCATCATGATGGTCAATTTCCTTCTCCTCTTGATG
TCGGCGCTCATTTCACTAACATGGCGTACGAACGCGCGACATTACCCTGA
ACGATATTTCGACGATTTAAAAGACAAATGGGCGTACCACATTGCAGCAT
TGGCGGTACCAGTGGGCGGCTATCTTCTTATTCAATTCATTTCGACGTGT
TGTTgtgattgcaaaaattttcgaggATTGGCGGATATTTTGATGATGTT
GCTTTGTTTGGTGTTTGGCGCCTTAATCATCGTCAGCGGAGTTTTTCTAC
AAATGGCGCTCCATGATAGAGACTGCTTCCAACAACGAAATTGTCAACAA
CTCAGGGCATCTATTATAATTGGTTACGTATCGTCGGCTTTTCTTTTTGC
AGAATCTTTCTTCCATTTATCAGAGAAAAACATCGTAATGAACGTCGTAT
GAatGGCGGGTACGTTCAAAGCTAGATCACAACATCCCATGGGATCACTG
AGAACATTATCAGGACTCATCATGATGGTCAATTTCCTTCTCCTCTTGAT
GTCGGCGCTCATTTCACTAACATGGCGTACGAACGCGCGACATTACCCTG
AACGATATTTCGACGATTTAAAAGACAAATGGGCGTACCACATTGCAGCA
TTGGCGGTACCAGTGGGCGGCTATCTTCTTATTCAATTCATTTCGACGTG
TTGTTgtgattgcaaaaattttcgaggATTGGCGGATATTTTGATGATGT
TGCTTTGTTTGGTGTTTGGCGCCTTAATCATCGTCAGCGGAGTTTTTCTA
CAAATGGCGCTCCATGATAGAGACTGCTTCCAACAACGAAATTGTCAACA
ACTCAGGGCATCTATTATAATTGGTTACGTATCGTCGGCTTTTCTTTTTG
CAGAATCTTTCTTCCATTTATCAGAGAAAAACATCGTAATGAACGTCGTA
TGAatGGCGGGTACGTTCAAAGCTAGATCACAACATCCCATGGGATCACT
GAGAACATTATCAGGACTCATCATGATGGTCAATTTCCTTCTCCTCTTGA
TGTCGGCGCTCATTTCACTAACATGGCGTACGAACGCGCGACATTACCCT
GAACGATATTTCGACGATTTAAAAGACAAATGGGCGTACCACATTGCAGC
ATTGGCGGTACCAGTGGGCGGCTATCTTCTTATTCAATTCATTTCGACGT
GTTGTTgtgattgcaaaaattttcgaggATTGGCGGATATTTTGATGATG
TTGCTTTGTTTGGTGTTTGGCGCCTTAATCATCGTCAGCGGAGTTTTTCT
ACAAATGGCGCTCCATGATAGAGACTGCTTCCAACAACGAAATTGTCAAC
AACTCAGGGCATCTATTATAATTGGTTACGTATCGTCGGCTTTTCTTTTT
GCAGAATCTTTCTTCCATTTATCAGAGAAAAACATCGTAATGAACGTCGT
ATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024733-exon-sc0000509-1491911889:168980..169128 | TCONS_00024733-exon-sc0000509-1491911889:168980..169128 | Clytia hemisphaerica | exon |
| TCONS_00024733-exon-sc0000509-1510915933:168980..169128 | TCONS_00024733-exon-sc0000509-1510915933:168980..169128 | Clytia hemisphaerica | exon |
| TCONS_00024733-exon-sc0000509-1575043694:168980..169128 | TCONS_00024733-exon-sc0000509-1575043694:168980..169128 | Clytia hemisphaerica | exon |
| TCONS_00024733-exon-sc0000509-1491911889:169375..169581 | TCONS_00024733-exon-sc0000509-1491911889:169375..169581 | Clytia hemisphaerica | exon |
| TCONS_00024733-exon-sc0000509-1510915933:169375..169581 | TCONS_00024733-exon-sc0000509-1510915933:169375..169581 | Clytia hemisphaerica | exon |
| TCONS_00024733-exon-sc0000509-1575043694:169375..169581 | TCONS_00024733-exon-sc0000509-1575043694:169375..169581 | Clytia hemisphaerica | exon |
| TCONS_00024733-exon-sc0000509-1491911889:170008..170130 | TCONS_00024733-exon-sc0000509-1491911889:170008..170130 | Clytia hemisphaerica | exon |
| TCONS_00024733-exon-sc0000509-1510915933:170008..170130 | TCONS_00024733-exon-sc0000509-1510915933:170008..170130 | Clytia hemisphaerica | exon |
| TCONS_00024733-exon-sc0000509-1575043694:170008..170130 | TCONS_00024733-exon-sc0000509-1575043694:170008..170130 | Clytia hemisphaerica | exon |
| TCONS_00024733-exon-sc0000509-1491911889:170876..172735 | TCONS_00024733-exon-sc0000509-1491911889:170876..172735 | Clytia hemisphaerica | exon |
| TCONS_00024733-exon-sc0000509-1510915933:170876..172735 | TCONS_00024733-exon-sc0000509-1510915933:170876..172735 | Clytia hemisphaerica | exon |
| TCONS_00024733-exon-sc0000509-1575043694:170876..172735 | TCONS_00024733-exon-sc0000509-1575043694:170876..172735 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000509 | supercontig | sc0000509:168980..172735 + |
Blast
The following BLAST results are available for this feature:
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