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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024744 ID=TCONS_00024744|Name=TCONS_00024744|organism=Clytia hemisphaerica|type=transcript|length=1708bpRun BLAST on NCBI protein sequence of TCONS_00024744-protein >TCONS_00024744-protein ID=TCONS_00024744-protein|Name=TCONS_00024744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp MTKKELTAREKIILQELQKRKETVLKEIQQINDEITEISKELEIMDQQDERun BLAST on NCBI transcript from alignment at sc0000509:220437..234491- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024744 ID=TCONS_00024744|Name=TCONS_00024744|organism=Clytia hemisphaerica|type=transcript|length=14055bp|location=Sequence derived from alignment at sc0000509:220437..234491- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000509:220437..234491- >TCONS_00024744 ID=TCONS_00024744|Name=TCONS_00024744|organism=Clytia hemisphaerica|type=CDS|length=17640bp|location=Sequence derived from alignment at sc0000509:220437..234491- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024744 vs. Swiss-Prot (Human)
Match: CYH2 (Cytohesin-2 OS=Homo sapiens GN=CYTH2 PE=1 SV=2) HSP 1 Score: 459.529 bits (1181), Expect = 4.372e-157 Identity = 219/397 (55.16%), Postives = 296/397 (74.56%), Query Frame = 2
Query: 80 GKMTKKELTAREKIILQELQKRKETVLKEIQQINDEITEISKELEIMDQQDESPASSKEKLLAVGVKKFNINVKKGLEYITKNGLINETPEDIAKFLYKNDGLNKVKIGEYLGENLDLQLKVLKEFVQLHDFENKTLDAALRDFLWSFRLPGEAQKIDRMMESFAEQYCLLNPGKFKTADTCYVLSFSTIMLNTSLHNPNVKDKITVEGFIKMNKGINDGGDIPSEMLEELFSSIANQPFEISGNDENDLVKTFFNPEREGMLTKEGGIH-RTWKPRYFILKDNCLFYFRNKGDKEPTGIIPLENLQVRENNDIRRKHCFEIYAPG--GAIIKACKTESDGKVVTGHHDIYRICASSAEERGEWIKSIKNSITRDPFYDMLQARKKKAT--HKQVQP 1255
G +LT E++ L+ +++RK+ +L EIQ++ +E++E E+E ++ + S + + +A+G KKFN++ KKG++++ +N L+ TPE+IA+FLYK +GLNK IG+YLGE +L L VL FV LH+F + L ALR FLWSFRLPGEAQKIDRMME+FA++YCL NPG F++ DTCYVLSF+ IMLNTSLHNPNV+DK +E F+ MN+GIN+GGD+P E+L L+ SI N+PF+I +D NDL TFFNP+REG L K GG +TWK R+FIL DNCL+YF DKEP GIIPLENL +RE +D R+ +CFE+Y P G +IKACKTE+DG+VV G+H +YRI A + EE+ EWIKSI+ +++ DPFY+ML ARKK+ + KQ QP
Sbjct: 4 GVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVDDPRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQAAVSVDPFYEMLAARKKRISVKKKQEQP 400 The following BLAST results are available for this feature:
BLAST of TCONS_00024744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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