TCONS_00025626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025626
Unique NameTCONS_00025626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1034

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025626 ID=TCONS_00025626|Name=TCONS_00025626|organism=Clytia hemisphaerica|type=transcript|length=1034bp
GGCAAGTAATTCAAGAGTCATCAAATCGTTCGAAAGCTCGCAAGCTGACG
AAATTGAAAACTCTGACGAAGCTCCATTGTACCTTGCTGACGATGATGAA
TCAACATTTGATGGCATGGAAAGGAAACGCCCTTCTTCAGATGGAAATTC
TGATCTCTGGAGTGTAAATCGTCCAAGCTCTGACTTCTTTGTTGGAGAAA
GCACTACAGAATTTCAAACAAAGCTGCAAACCACTAAACGGGAAGTAGAA
ACCACACAACCTACACAACCGACAAAAACGACCAGAACCACACCTCGAAT
TCCCAAAGGATTGAAAAGAAAGattgttgaaaaaataatcaaaaAGTTGA
TTCACCGTATTCAAAAACTGGAATCTAACACTGAATCATTGGGAGAAATG
CTTTGGACAATCAGCCAAAGACTCGATCGCCTTATGAAACGCAAGAACAA
AAATGATACCAGCTCTTCCGCTGACAATTCAATCTTACTAAAGATCTCGA
AGAAGATGAACCAGATGGCATGGATTCCAGTTGCCGATGAAGTTGGCAAC
TCCACTCGAAATCGATCCATAATCAAAACCCCACCACGCTTAACTGGTAA
ACAATCTGCCGTTGCCCTTCACAACCAAGTTGACAATTTGTCACCAAGTT
AGTCTCAGCCCTTTTAAAGAAACTCATTGAAACAAATGACAAGCCAACCA
CACTGAGAATAGTTCGggaatttcaaacaaaaatagaGCTTTATATCCGT
ATTCTCGAAAACTCTTTGAAAAACGTCGAAAATAACCAGAAGATTGGAAA
TGGAGAAAGTTCGGTCAATGAACACAAATCGTTGCGGAAACTGGTTGAAA
ACTTGCAACAGAAAGTTGAAACGAACAGTCAGTTGATCCATCGCATGACT
GTGGAACTCGGCATCAGACCATGATTAAGTTATATCTTTTTAAATCCATT
TATTCTGTAAACTATAATACTTAATGAGTAGATGTTATTACATGCATGTG
TCTTTATGAAACTCAAATTTTTGCAGAATTACTC
Run BLAST on NCBI

protein sequence of TCONS_00025626-protein

>TCONS_00025626-protein ID=TCONS_00025626-protein|Name=TCONS_00025626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
ASNSRVIKSFESSQADEIENSDEAPLYLADDDESTFDGMERKRPSSDGNS
DLWSVNRPSSDFFVGESTTEFQTKLQTTKREVETTQPTQPTKTTRTTPRI
PKGLKRKIVEKIIKKLIHRIQKLESNTESLGEMLWTISQRLDRLMKRKNK
NDTSSSADNSILLKISKKMNQMAWIPVADEVGNSTRNRSIIKTPPRLTGK
QSAVALHNQVDNLSPS
Run BLAST on NCBI

transcript from alignment at sc0000541:86805..88270+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025626 ID=TCONS_00025626|Name=TCONS_00025626|organism=Clytia hemisphaerica|type=transcript|length=1466bp|location=Sequence derived from alignment at sc0000541:86805..88270+ (Clytia hemisphaerica)
GGCAAGTAATTCAAGAGTCATCAAATCGTTCGAAAGCTCGCAAGCTGACG
AAATTGAAAACTCTGACGAAGCTCCATTGTACCTTGCTGACGATGATGAA
TCAACATTTGATGGCATGGAAAGGAAACGCCCTTCTTCAGATGGAAATTC
TGATCTCTGGAGTGTAAATCGTCCAAGCTCTGACTTCTTTGTTGGAGAAA
GCACTACAGAATTTCAAACAAAGCTGCAAACCACTAAACGGGAAGTAGAA
ACCACACAACCTACACAACCGACAAAAACGACCAGAACCACACCTCGAAT
TCCCAAAGGATTGAAAAGAAAGattgttgaaaaaataatcaaaagtgAGT
TGTTTTTACTTGATTGATTTCAAAGAGTTTGAGAATTCGCGGTCGGTGTG
AACATTGTACCGTATCTATACAGGGGGTGTagcagaatttccagggggtg
aaagACTGATTTcagtccaccctcactttaaggtatgaaaataaattttt
ccaagggttcttttgtaaatttcttttttcaagaaaatatcttttgacct
gaaaaggttcgtccataCCCCTTGTATAGAAATTTAATGCAATGGCCAAA
TCTCATTGGGCCAATGGTCCAATGAGATTTGTATTTATATATTTGGAAAA
AGAGGTTTGGAATAAAGCAGTGTGACTTATTATCCTCACTTTCTTGTTTT
CAGGAAAAGTGAAAAGTGTTTGCTCTTAGGAATGTGTTCGGATAAACAAT
TTATTATCTTCCTTTCAAATTTACAGAGTTGATTCACCGTATTCAAAAAC
TGGAATCTAACACTGAATCATTGGGAGAAATGCTTTGGACAATCAGCCAA
AGACTCGATCGCCTTATGAAACGCAAGAACAAAAATGATACCAGCTCTTC
CGCTGACAATTCAATCTTACTAAAGATCTCGAAGAAGATGAACCAGATGG
CATGGATTCCAGTTGCCGATGAAGTTGGCAACTCCACTCGAAATCGATCC
ATAATCAAAACCCCACCACGCTTAACTGGTAAACAATCTGCCGTTGCCCT
TCACAACCAAGTTGACAATTTGTCACCAAGTTAGTCTCAGCCCTTTTAAA
GAAACTCATTGAAACAAATGACAAGCCAACCACACTGAGAATAGTTCGgg
aatttcaaacaaaaatagaGCTTTATATCCGTATTCTCGAAAACTCTTTG
AAAAACGTCGAAAATAACCAGAAGATTGGAAATGGAGAAAGTTCGGTCAA
TGAACACAAATCGTTGCGGAAACTGGTTGAAAACTTGCAACAGAAAGTTG
AAACGAACAGTCAGTTGATCCATCGCATGACTGTGGAACTCGGCATCAGA
CCATGATTAAGTTATATCTTTTTAAATCCATTTATTCTGTAAACTATAAT
ACTTAATGAGTAGATGTTATTACATGCATGTGTCTTTATGAAACTCAAAT
TTTTGCAGAATTACTC

Coding sequence (CDS) from alignment at sc0000541:86805..88270+

>TCONS_00025626 ID=TCONS_00025626|Name=TCONS_00025626|organism=Clytia hemisphaerica|type=CDS|length=1302bp|location=Sequence derived from alignment at sc0000541:86805..88270+ (Clytia hemisphaerica)
GCAAGTAATTCAAGAGTCATCAAATCGTTCGAAAGCTCGCAAGCTGACGA
AATTGAAAACTCTGACGAAGCTCCATTGTACCTTGCTGACGATGATGAAT
CAACATTTGATGGCATGGAAAGGAAACGCCCTTCTTCAGATGGAAATTCT
GATCTCTGGAGTGTAAATCGTCCAAGCTCTGACTTCTTTGTTGGAGAAAG
CACTACAGAATTTCAAACAAAGCTGCAAACCACTAAACGGGAAGTAGAAA
CCACACAACCTACACAACCGACAAAAACGACCAGAACCACACCTCGAATT
CCCAAAGGATTGAAAAGAAAGattgttgaaaaaataatcaaaaAGTTGAT
TCACCGTATTCAAAAACTGGAATCTAACACTGAATCATTGGGAGAAATGC
TTTGGACAATCAGCCAAAGACTCGATCGCCTTATGAAACGCAAGAACAAA
AATGATACCAGCTCTTCCGCTGACAATTCAATCTTACTAAAGATCTCGAA
GAAGATGAACCAGATGGCATGGATTCCAGTTGCCGATGAAGTTGGCAACT
CCACTCGAAATCGATCCATAATCAAAACCCCACCACGCTTAACTGGTAAA
CAATCTGCCGTTGCCCTTCACAACCAAGTTGACAATTTGTCACCAAGTTA
GGCAAGTAATTCAAGAGTCATCAAATCGTTCGAAAGCTCGCAAGCTGACG
AAATTGAAAACTCTGACGAAGCTCCATTGTACCTTGCTGACGATGATGAA
TCAACATTTGATGGCATGGAAAGGAAACGCCCTTCTTCAGATGGAAATTC
TGATCTCTGGAGTGTAAATCGTCCAAGCTCTGACTTCTTTGTTGGAGAAA
GCACTACAGAATTTCAAACAAAGCTGCAAACCACTAAACGGGAAGTAGAA
ACCACACAACCTACACAACCGACAAAAACGACCAGAACCACACCTCGAAT
TCCCAAAGGATTGAAAAGAAAGattgttgaaaaaataatcaaaaAGTTGA
TTCACCGTATTCAAAAACTGGAATCTAACACTGAATCATTGGGAGAAATG
CTTTGGACAATCAGCCAAAGACTCGATCGCCTTATGAAACGCAAGAACAA
AAATGATACCAGCTCTTCCGCTGACAATTCAATCTTACTAAAGATCTCGA
AGAAGATGAACCAGATGGCATGGATTCCAGTTGCCGATGAAGTTGGCAAC
TCCACTCGAAATCGATCCATAATCAAAACCCCACCACGCTTAACTGGTAA
ACAATCTGCCGTTGCCCTTCACAACCAAGTTGACAATTTGTCACCAAGTT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014384XLOC_014384Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025626-proteinTCONS_00025626-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025626-exon-sc0000541-1491911889:86805..87148TCONS_00025626-exon-sc0000541-1491911889:86805..87148Clytia hemisphaericaexon
TCONS_00025626-exon-sc0000541-1510915933:86805..87148TCONS_00025626-exon-sc0000541-1510915933:86805..87148Clytia hemisphaericaexon
TCONS_00025626-exon-sc0000541-1575043694:86805..87148TCONS_00025626-exon-sc0000541-1575043694:86805..87148Clytia hemisphaericaexon
TCONS_00025626-exon-sc0000541-1491911889:87581..88270TCONS_00025626-exon-sc0000541-1491911889:87581..88270Clytia hemisphaericaexon
TCONS_00025626-exon-sc0000541-1510915933:87581..88270TCONS_00025626-exon-sc0000541-1510915933:87581..88270Clytia hemisphaericaexon
TCONS_00025626-exon-sc0000541-1575043694:87581..88270TCONS_00025626-exon-sc0000541-1575043694:87581..88270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000541supercontigsc0000541:86805..88270 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.28941	4.82253	1.80155	1.09563	0.115985	0.0458264	0	0	0	0	0	0.02864	0.0286002	0	0	0	0	0	0.0457135	0	0	0	3.84593	3.09306	0	0	0.176898	0.12586	1.28872	1.70204
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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