TCONS_00025641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025641
Unique NameTCONS_00025641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025641 ID=TCONS_00025641|Name=TCONS_00025641|organism=Clytia hemisphaerica|type=transcript|length=1391bp
ATAGCTGCGTTTGGTATTTTAGGAATCAATTGCGTAGATTGTAGAATAGA
TGGTTAATTACTCCTTCGCTAAGGCTTACAATAAAAAGCTGTATTTTGTG
GTCCGTGGTTAAAAACTCGTCacatttttgactaaaaatctCCGATAACA
GACTCTTTTTTTTCTGTGTGGAGCTATCATCATGTTTCCTTGGTCAACGG
CAACTTCAATGTGTCATTCCAGTTGTTGTGATGACAAACACCTACATTCT
CCGACATCAACATCCGTCATTGACGACGAATATTACTCCATGTGTCGTTC
AAAACAACGTCGTAATCGCACAACTTTTACTAAGCAACAATTAGAGGAAT
TAGAGCTTACCTTTCAACGTAAACATTATCCAGACATTAACACGCGTGAG
GCTTTAGCAGAAAAAATTGGCATAACGGAAGCTAGAATACAGGTATGGTT
TCAGAACCGACGAGCAAAATGGAGAAAACTTTCATCTGCTAAACAAAAAC
TGATTCAAAAGAACGTTCAATTACGAACACATACCACAGAAAACAACTCT
GATAAACCACCATGGTTTACTGGCATCCCAAGACCTCATAGTCtacaaaa
cgaaagcgaaagacATCACCCTCATCCAGTCACTTTACTACCAAGATTGA
TCTCAGACGAGGTACTTTCTTCTAAACACGCTAGATATTCGGAACGTATG
CACACCCATTATCATTTCCGAGGACATCATGAACCCTCTTCAGCCGAGAT
CAGCCACGTTCGCGGGGCCAGAGACCATGAAAAGTATTTCTCACATTCAC
CACCGCTTTTCATCAAACATCATCACCGCCATGCAAAGCTTCCATCTCCT
CAACCATCCCCGTCATCCGATCGTGTTCATAGATCTCCCGATATCAAATC
CGAATCAGAAATAGAACACAGTcctaaaaatccaattttctaCCCGTTTT
CAACTCGCCAATTAGCGTGCCCCTGTCGctcttgttacttaaaatacgTC
GAATCAACGTACGCTGCTAATCATGAGAAATTCGATCGGCGGCACCGAGA
CACTGATGACGTCATACTTCGACGTGATGACGTCGCATCACGTCATCatg
atgacgtcacttttcTGAAAGACGAATTATGGAAGGAAAGAGAAGCAAAG
AAAAGTCCGGCTTCTTCCATCTTTTCGAAAAGTCCGGACAATATTAAAAC
AGAACCGATTGATCACCAGTCTTCTTTCGAAGGAAATGATAGTGTTGAAT
AATCAGTGAACATTATATCACCCATGCGCTCGAATGACTCGTTCCAGTtc
gttttaaaaaacaaaacgaaaATCGAGACAAAAGGCCGAGAAGTTCGTCT
CTCAAGCTGTTAATCTATTTGTTTTAAATGATATTCGCCAg
Run BLAST on NCBI

transcript from alignment at sc0000541:167881..169961-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025641 ID=TCONS_00025641|Name=TCONS_00025641|organism=Clytia hemisphaerica|type=transcript|length=2081bp|location=Sequence derived from alignment at sc0000541:167881..169961- (Clytia hemisphaerica)
ATAGCTGCGTTTGGTATTTTAGGAATCAATTGCGTAGATTGTAGAATAGA
TGGTTAATTACTCCTTCGCTAAGGCTTACAATAAAAAGCTGTATTTTGTG
GTCCGTGGTTAAAAACTCGTCACATTTTTGACTAAAAATCTCCGATAACA
GACTCTTTTTTTTCTGTGTGGAGCTATCATCATGTTTCCTTGGTCAACGG
CAACTTCAATGTGTAAGAATTTTATTCATGTACCCTGTATTTAAATTTTT
ACCATAATCTCTCGTTTACTTTTAAGTTTAATTCATTTTACCTTAAGGGA
ATAAATTAATGCGAGAATAAATTAATGCAGAATAAATTAATGCGCATTGG
CCCTAATTCGCATTATTTAATTCCGCAATTCCTAACATTGGTCAATTCGC
ATTAATAAATTCCGCATTTTAAATAATTTTGCTGTGATTTTATCATGAAT
AAAGTTTAAAATGTGGCTCATTCGTATTAATTAATTCCGCAAAACATGAA
ATTTTTGAGGTGTCATTCGCATTAATTTATTCCGCATTAATTTATTCTCG
CATTATTTTATTCCCTTTTTAGTCTTTTTTAGTGAAAACGAGTGCATACT
TTAGAGGACGGATTTTCTTTGGAAATTGAAAATATCTTTAACTTTTTCAT
CTTTCATTGAAGGTCATTCCAGTTGTTGTGATGACAAACACCTACATTCT
CCGACATCAACATCCGTCATTGACGACGAATATTACTCCATGTGTCGTTC
AAAACAACGTCGTAATCGCACAACTTTTACTAAGCAACAATTAGAGGAAT
TAGAGCTTACCTTTCAACGTAAACATTATCCAGACATTAACACGCGTGAG
GCTTTAGCAGAAAAAATTGGCATAACGGAAGCTAGAATACAGGTAATCTT
TTCATCGCTGAAATTTCTCAGAAAGTGTCATATGCATGTCTAAAGCAGAT
AAAACACCACCTTCTAGACTTTTCAGGAATAGTACCAAAACTATATAGCT
GTAAACTCTATGACCTGTTTGAAGTCTGAAATTCAAAAGGAAAAAAAACA
CAGAAATATTTCTAATCTTTGAAATACAGTGAAGTGAAAGGAAAGATCAT
TTTGATGTAAATTCTATTTCACTGTTTTATAGGTATGGTTTCAGAACCGA
CGAGCAAAATGGAGAAAACTTTCATCTGCTAAACAAAAACTGATTCAAAA
GAACGTTCAATTACGAACACATACCACAGAAAACAACTCTGATAAACCAC
CATGGTTTACTGGCATCCCAAGACCTCATAGTCTACAAAACGAAAGCGAA
AGACATCACCCTCATCCAGTCACTTTACTACCAAGATTGATCTCAGACGA
GGTACTTTCTTCTAAACACGCTAGATATTCGGAACGTATGCACACCCATT
ATCATTTCCGAGGACATCATGAACCCTCTTCAGCCGAGATCAGCCACGTT
CGCGGGGCCAGAGACCATGAAAAGTATTTCTCACATTCACCACCGCTTTT
CATCAAACATCATCACCGCCATGCAAAGCTTCCATCTCCTCAACCATCCC
CGTCATCCGATCGTGTTCATAGATCTCCCGATATCAAATCCGAATCAGAA
ATAGAACACAGTCCTAAAAATCCAATTTTCTACCCGTTTTCAACTCGCCA
ATTAGCGTGCCCCTGTCGCTCTTGTTACTTAAAATACGTCGAATCAACGT
ACGCTGCTAATCATGAGAAATTCGATCGGCGGCACCGAGACACTGATGAC
GTCATACTTCGACGTGATGACGTCGCATCACGTCATCATGATGACGTCAC
TTTTCTGAAAGACGAATTATGGAAGGAAAGAGAAGCAAAGAAAAGTCCGG
CTTCTTCCATCTTTTCGAAAAGTCCGGACAATATTAAAACAGAACCGATT
GATCACCAGTCTTCTTTCGAAGGAAATGATAGTGTTGAATAATCAGTGAA
CATTATATCACCCATGCGCTCGAATGACTCGTTCCAGTTCGTTTTAAAAA
ACAAAACGAAAATCGAGACAAAAGGCCGAGAAGTTCGTCTCTCAAGCTGT
TAATCTATTTGTTTTAAATGATATTCGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014392XLOC_014392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025641-exon-sc0000541-1575043694:169750..169961TCONS_00025641-exon-sc0000541-1575043694:169750..169961Clytia hemisphaericaexon
TCONS_00025641-exon-sc0000541-1575043694:169070..169299TCONS_00025641-exon-sc0000541-1575043694:169070..169299Clytia hemisphaericaexon
TCONS_00025641-exon-sc0000541-1575043694:167881..168829TCONS_00025641-exon-sc0000541-1575043694:167881..168829Clytia hemisphaericaexon
TCONS_00025641-exon-sc0000541-1510915933:169750..169961TCONS_00025641-exon-sc0000541-1510915933:169750..169961Clytia hemisphaericaexon
TCONS_00025641-exon-sc0000541-1510915933:169070..169299TCONS_00025641-exon-sc0000541-1510915933:169070..169299Clytia hemisphaericaexon
TCONS_00025641-exon-sc0000541-1510915933:167881..168829TCONS_00025641-exon-sc0000541-1510915933:167881..168829Clytia hemisphaericaexon
TCONS_00025641-exon-sc0000541-1491911889:169750..169961TCONS_00025641-exon-sc0000541-1491911889:169750..169961Clytia hemisphaericaexon
TCONS_00025641-exon-sc0000541-1491911889:169070..169299TCONS_00025641-exon-sc0000541-1491911889:169070..169299Clytia hemisphaericaexon
TCONS_00025641-exon-sc0000541-1491911889:167881..168829TCONS_00025641-exon-sc0000541-1491911889:167881..168829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000541supercontigsc0000541:167881..169961 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.92416	2.74562	0.32881	0.887886	0.912277	0.458158	0.633527	0.496267	0	0	0.621055	1.07136	1.30034	1.48602	0.919904	0.296319	0.457856	0.37821	0.742348	0.72664	0	0	0	0
Blast
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BLAST of TCONS_00025641 vs. Swiss-Prot (Human)
Match: DRGX (Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.591e-25
Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 2 
Query:  257 STSVIDDEYYSMCRSKQRRNRTTFTKQQLEELELTFQRKHYPDINTREALAEKIGITEARIQVWFQNRRAKWRK 478
            S+   DD +    R KQRRNRTTFT QQLE LE  F + HYPD+ TRE LA KI +TEAR+QVWFQNRRAKWRK
Sbjct:   20 SSGDFDDGFL---RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRK 90
The following BLAST results are available for this feature:
BLAST of TCONS_00025641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DRGX8.591e-2566.22Dorsal root ganglia homeobox protein OS=Homo sapie... [more]
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