TCONS_00014249-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00014249-protein
Unique Name	TCONS_00014249-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	383

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00014249-protein ID=TCONS_00014249-protein|Name=TCONS_00014249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MKSNITTTLQPTIYQPSHLMEQLFHLHDQGENISRTNLLYGCDGQISDTI
PPPEAYTVATVIFLTIIVSVFGNSLIIVAVYRIKLLQTPTNALLCSLAIT
DLLGPIVRLLSLGIAMVLGKWTFGCNWCVVSSTLGILFGAGSINHLCLIS
VERCITINLPYKAKQFIHKRSITVAIFIVWTVSIVCSLLPFFGVGLVRFT
PTMLDCEVYLGNEPKLGLVLGGVYFIFPFTVMVIVYTLIFCISVRKQTKQ
MFTYSIGRREEKQKQKMKAEMKALKTVMIVVGFFILLWLPYFITSGLEPF
HPSMVPSWWKRFSFILAYMNSCCNWIVYGVRNKQMRNAFKSVLGISNKRR
TSEASEKSIASQTKSTRRHVFKCQDFNENNSNS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_007965	XLOC_007965	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00014249	TCONS_00014249	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 90..111 score: 31.15 coord: 310..336 score: 27.25 coord: 57..81 score: 24.35 coord: 135..157 score: 28.37 coord: 217..240 score: 24.94 coord: 273..297 score: 32.48 coord: 171..192 score: 22.79
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 66..343 e-value: 2.5E-6 score: -16.2
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 72..328 e-value: 4.8E-47 score: 160.4
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 141..157
None	No IPR available	GENE3D	1.20.1070.10		coord: 28..383 e-value: 5.5E-74 score: 248.5
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 47..366
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 72..328 score: 35.337

Blast

[Close]

BLAST of TCONS_00014249-protein vs. Swiss-Prot (Human)
Match: ADA1A (Alpha-1A adrenergic receptor OS=Homo sapiens GN=ADRA1A PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.412e-31
Identity = 100/347 (28.82%), Postives = 159/347 (45.82%), Query Frame = 0

Query:   38 LLYGCDGQISDTIPPPEAYTVATVIFLTIIVS------VFGNSLIIVAVYRIKLLQTPTNALLCSLAITDLLGPIVRLLSLGIAMVLGKWTFGCNWCVVSSTLGILFGAGSINHLCLISVERCITINLPYKAKQFIHKRSITVAIFIVWTVSIVCSLLPFFGVGLVRFTPTMLD---CEVYLGNEPKLGLVLGGVYFIFPFTVMVIVYTLIFCISVR------------KQTKQMFTYSIGRR----------EEKQKQ-------KMKAEMKALKTVMIVVGFFILLWLPYFITSGLEPFHPSMVPSWWK-RFSFILAYMNSCCNWIVYGVRNKQMRNAFKSVLGI 345
             L G     S+   PP    ++  I L +I+       V GN L+I++V   + L + T+  + +LA+ DLL     L    I  VLG W FG  +C + + + +L    SI  LC+IS++R I ++ P +    + +R   +A+  VW +S+V S+ P FG       P   D   C++    EP   L      F  P  +++++Y  ++ ++ R            K   +  T  I R+            K K        K   E KA KT+ IVVG F+L WLP+F+   +  F P   PS    +  F L Y+NSC N I+Y   +++ + AF++VL I
Sbjct:    3 FLSGNASDSSNCTQPPAPVNISKAILLGVILGGLILFGVLGNILVILSVACHRHLHSVTHYYIVNLAVADLLLTSTVLPFSAIFEVLGYWAFGRVFCNIWAAVDVLCCTASIMGLCIISIDRYIGVSYPLRYPTIVTQRRGLMALLCVWALSLVISIGPLFGWR----QPAPEDETICQI--NEEPGYVLFSALGSFYLPLAIILVMYCRVYVVAKRESRGLKSGLKTDKSDSEQVTLRIHRKNAPAGGSGMASAKTKTHFSVRLLKFSREKKAAKTLGIVVGCFVLCWLPFFLVMPIGSFFPDFKPSETVFKIVFWLGYLNSCINPIIYPCSSQEFKKAFQNVLRI 343

The following BLAST results are available for this feature:

BLAST of TCONS_00014249-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00014249-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADA1A	3.412e-31	28.82	Alpha-1A adrenergic receptor OS=Homo sapiens GN=AD...	[more]

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TCONS_00014249-protein (polypeptide) - C. hemisphaerica