TCONS_00014762-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00014762-protein
Unique NameTCONS_00014762-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00014762-protein ID=TCONS_00014762-protein|Name=TCONS_00014762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=659bp
MATADQQRSLKDAMERAKQIAAKLQAQQAAGLPLEETRKRSLADDDQSES
PMNKMAFVPPMGGPIDPSDPKSIAQQVANSLVQRAGFGSMLVEEVMIPNK
LVGLVIGRGGEMINKLQSESGAKIQVATDPPPEIAAMQTERQVTITGMAD
NVNKAKSLIDEIRSEGKVPERLLSGGGGGASEYSTEMLIPSTKVGLVIGK
GGETIKSLQERAGCKMVLFQDGEYQQSNEKPLRISGEHNKVMYGKQLVQD
LLTQKELEAMGKDSNQGMQKTQDGHIYEEFQVPREAVGFVIGTRGSSINN
IQQQTGCKVQFKNEMEGDFKIAMLNGTPQQVQAAKDALVECIQSHSERKN
DGGGGGGGGRNQSWGGNRGGGWNGPDGRNGGPRGYRDQGRNTGGGRHQQL
PPGHKHVCVDVPSNKCGLIIGKGGETLKFIHQDTKVFIEIERNSPPDAPT
RVFHLKGTDEMIEMALHEMRDKINDQNICARPFMPQGGGPGWGGPGGPGG
PGGWGNQGWNQGGGWNQGGGWNQPQGGWGQGGWNQGGWNQQQGGWGQPQQ
GGWGQQPYQQQQWGQQSSAPNTSTTTTTPTANPATGQPDYSAAWAQYYQQ
QQMYYQQYQSTAASSSTTTTTTASSASGGAQSQSMEEYQKKLAEYYKQYG
QGEAAKPEK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_008265XLOC_008265Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00014762TCONS_00014762Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR004088KH_dom_type_1
IPR015096FUBP_C
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 346..406
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..588
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 609..636
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 404..469
score: 13.921
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 90..159
score: 18.344
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 275..338
score: 15.347
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 182..248
score: 17.15
NoneNo IPR availableCDDcd00105KH-Icoord: 406..468
e-value: 8.36246E-11
score: 57.5699
NoneNo IPR availableCDDcd00105KH-Icoord: 92..159
e-value: 3.12183E-16
score: 73.3631
NoneNo IPR availableCDDcd00105KH-Icoord: 184..249
e-value: 5.18012E-11
score: 58.3403
NoneNo IPR availableCDDcd00105KH-Icoord: 278..338
e-value: 1.50339E-11
score: 59.8811
IPR004087K Homology domainSMARTSM00322kh_6coord: 89..164
e-value: 7.1E-17
score: 72.1
coord: 274..343
e-value: 1.4E-13
score: 61.1
coord: 181..253
e-value: 5.6E-12
score: 55.8
coord: 403..474
e-value: 1.1E-11
score: 54.8
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 278..339
e-value: 1.3E-15
score: 56.8
coord: 409..470
e-value: 2.4E-13
score: 49.6
coord: 93..161
e-value: 4.0E-19
score: 68.1
coord: 185..249
e-value: 7.7E-14
score: 51.2
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 398..622
e-value: 1.5E-18
score: 65.9
coord: 272..397
e-value: 2.0E-18
score: 65.4
coord: 83..168
e-value: 3.1E-20
score: 71.3
coord: 179..271
e-value: 5.8E-17
score: 60.8
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 272..345
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 180..254
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 404..497
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 87..167
IPR015096Far upstream element-binding protein, C-terminalPFAMPF09005DUF1897coord: 582..601
e-value: 5.6E-6
score: 25.6

Blast
[Close]
BLAST of TCONS_00014762-protein vs. Swiss-Prot (Human)
Match: FUBP2 (Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP PE=1 SV=4)

HSP 1 Score: 222.631 bits (566), Expect = 2.443e-63
Identity = 165/480 (34.38%), Postives = 240/480 (50.00%), Query Frame = 0 
Query:    9 SLKDAMERAKQIAAKLQAQQAAGLPLEET------RKRSLADDDQSESPMNKMAF----VPPMGGPIDPSDPKSIAQQVANSLVQRAGFGSMLVEEVMIPNKLVGLVIGRGGEMINKLQSESGAKIQVATDPPPEIAAMQTERQVTITGMADNVNKAKSLIDEIRSEGK--VPERLLSGGGGGASEYSTEMLIPSTKVGLVIGKGGETIKSLQERAGCKMVLFQDGEYQQSNEKPLRISGEHNKVMYGKQLVQDLLTQKELEAMGKDSNQGMQKTQDGHIYEEFQVPREAVGFVIGTRGSSINNIQQQTGCKVQFK-NEMEGDFKIAMLNGTPQQVQAAKDALVECIQSHSERKNDGGGGGGGGRNQSWGGNRGGGWNGPDGRNGGPRGYRDQGRNTGGGRHQQLPPGHKHVCVDVPSNKCGLIIGKGGETLKFIHQDTKVFIEIERNSPP--DAPTRVFHLKGTDEMIEMALHEMRDKI 473
            +  DA++RA+QIAAK+    A  +           +KR L D DQ ES   K+A     +    GPI P    S                  + EE  +P+ +VGL+IGRGGE INK+Q +SG K+Q++ D     +    ER V++TG  ++V KAK ++D+I S G+   P +      GG +    E++IP+ K GLVIGKGGETIK LQERAG KM+L QDG    + +KPLRI G+  KV    ++V D+L +++    G D N+   +   G    +  VPR +VG VIG  G  I  IQ   G ++QFK ++  G  KIA + G P + + A   + + +QS         GG G        G   G W  P G                             +   +P++KCGL+IG+GGE +K I+Q T  F+EI R  PP  D   ++F ++G+ + I+ A   + +KI
Sbjct:   73 AFADAVQRARQIAAKIGGDAATTVNNSTPDFGFGGQKRQLEDGDQPES--KKLASQGDSISSQLGPIHPPPRTS------------------MTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPD-----SGGLPERSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFG-DRNEYGSRIGGGI---DVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGGPGMPPGGRGRGRGQGNWGPPGG----------------------------EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKI 495
The following BLAST results are available for this feature:
BLAST of TCONS_00014762-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FUBP22.443e-6334.38Far upstream element-binding protein 2 OS=Homo sap... [more]
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