TCONS_00016312-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016312-protein
Unique NameTCONS_00016312-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016312-protein ID=TCONS_00016312-protein|Name=TCONS_00016312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp
MKNLQQKKHFKKLAKLQEKRKAKLKEKKLEEKVQEQEQDDEIESESGAEE
EQTESQTETITKDDSSRKRKIEKEKPEEQEDTSNNKKKKKKKKVEPEEEA
EEGTQTQKKTEEASDEKEEEVKEKLPELPTQEASLPPSKEFKSLEQHVCE
KTLKAITEDMTFTHMTEIQYRTVMPLLDGRDILGAAKTGSGKTLAFLIPA
VELLFKLNFMPRNGTGIIIISPTRELSLQTFGVVRDLMQHHHHTFGIVMG
GANRKQEAERLSRGVNLVVATPGRLLDHLQNTPGFVFKNLQCLIIDEADR
ILEIGFEEEMKQIIRILPKKRQTMLFSATQTRKVEDLARLSLKKAPLYVG
VDDDKETSTAEGIEQGYIVVPVDKRFLLLFTFLKKNRKKKVMVFFSSCNS
VKYHAELLNYIDIPVLDIHGRQKQQKRTSTFFEFCTAESGILLCTDVAAR
GLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGSDGRGHALLFLLPEELGF
LRYLKHAKVPLNEYDFSKAKISNIQQQLEKLIQKNYFLNKSAKDGYRSYL
QAYASHQHKNIFNVESLDLQKVGKGFGFITPPGVNLSVHTSKSGEKMKKR
NGALNYGGGGSYGYQKKTSKHGGFDKKKNFSR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009099XLOC_009099Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016312TCONS_00016312Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR025313DUF4217
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..45
NoneNo IPR availableCOILSCoilCoilcoord: 514..534
NoneNo IPR availableGENE3D3.40.50.300coord: 369..609
e-value: 2.7E-41
score: 141.1
NoneNo IPR availableGENE3D3.40.50.300coord: 46..368
e-value: 3.6E-61
score: 206.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 589..632
NoneNo IPR availableCDDcd00268DEADccoord: 141..349
e-value: 1.41461E-79
score: 251.635
NoneNo IPR availableCDDcd00079HELICccoord: 363..492
e-value: 3.6624E-31
score: 117.339
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 402..483
e-value: 5.8E-25
score: 98.9
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 378..482
e-value: 1.9E-23
score: 82.9
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 362..532
score: 20.498
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 161..366
e-value: 4.6E-54
score: 195.6
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 173..348
score: 30.843
IPR025313Domain of unknown function DUF4217SMARTSM01178DUF4217_3coord: 523..586
e-value: 1.3E-25
score: 101.1
IPR025313Domain of unknown function DUF4217PFAMPF13959DUF4217coord: 524..582
e-value: 6.6E-18
score: 64.6
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 166..337
e-value: 1.1E-42
score: 145.7
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 294..302
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 214..504

Blast
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BLAST of TCONS_00016312-protein vs. Swiss-Prot (Human)
Match: DDX18 (ATP-dependent RNA helicase DDX18 OS=Homo sapiens GN=DDX18 PE=1 SV=2)

HSP 1 Score: 745.347 bits (1923), Expect = 0.000e+0
Identity = 347/508 (68.31%), Postives = 425/508 (83.66%), Query Frame = 0 
Query:   84 NNKKKKKKKKVEPEEEAEEGTQTQKKTEEASDEKEEEVKEKLPELPTQEASLPPSKEFKSLEQHVCEKTLKAITEDMTFTHMTEIQYRTVMPLLDGRDILGAAKTGSGKTLAFLIPAVELLFKLNFMPRNGTGIIIISPTRELSLQTFGVVRDLMQHHHHTFGIVMGGANRKQEAERLSRGVNLVVATPGRLLDHLQNTPGFVFKNLQCLIIDEADRILEIGFEEEMKQIIRILPKKRQTMLFSATQTRKVEDLARLSLKKAPLYVGVDDDKETSTAEGIEQGYIVVPVDKRFLLLFTFLKKNRKKKVMVFFSSCNSVKYHAELLNYIDIPVLDIHGRQKQQKRTSTFFEFCTAESGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRVGRTARGSDGRGHALLFLLPEELGFLRYLKHAKVPLNEYDFSKAKISNIQQQLEKLIQKNYFLNKSAKDGYRSYLQAYASHQHKNIFNVESLDLQKVGKGFGFITPPGVNLSVHTS 591
            + KK K + K + EEE+ E T+  +   E  D  E+E   ++P LP           F SL   V E TLKAI E M FT+MTEIQ++++ PLL+GRD+L AAKTGSGKTLAFLIPAVEL+ KL FMPRNGTG++I+SPTREL++QTFGV+++LM HH HT+G++MGG+NR  EA++L  G+N++VATPGRLLDH+QNTPGF++KNLQCL+IDEADRIL++GFEEE+KQII++LP +RQTMLFSATQTRKVEDLAR+SLKK PLYVGVDDDK  +T +G+EQGY+V P +KRFLLLFTFLKKNRKKK+MVFFSSC SVKYH ELLNYID+PVL IHG+QKQ KRT+TFF+FC A+SG LLCTDVAARGLDIPEVDWIVQ+DPPDDPKEYIHRVGRTARG +GRGHALL L PEELGFLRYLK +KVPL+E+DFS +KIS+IQ QLEKLI+KNYFL+KSA++ Y+SY++AY SH  K IFNV +L+L +V   FGF  PP V+L+V+++
Sbjct:  124 DTKKAKTENKGKSEEESAETTKETENNVEKPDNDEDE--SEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEFDFSWSKISDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSN 628
The following BLAST results are available for this feature:
BLAST of TCONS_00016312-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX180.000e+068.31ATP-dependent RNA helicase DDX18 OS=Homo sapiens G... [more]
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