TCONS_00020293-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020293-protein
Unique NameTCONS_00020293-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1700

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020293-protein ID=TCONS_00020293-protein|Name=TCONS_00020293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1700bp
MRSSLLFFLLLVICLNPAALTEKVIPYKCSEQYGFNEWNKTCYTLVDWDP
MLQKTFEDAKVFCHLFGFHLIQFRSKGEKLHADKMIRFSKDPKWQRFWIA
PLDVNSTGTTTTCPVLTREGIFNRTNCEEKNYFLCSRDAPPITTTTRKPT
TTTTTTTIITTKPTTSTTTPRPSSTPKETTLKPTTPFRITQNFETEYKCP
SQYGFIELNNTCYAIIDWAPVLKKNHLGAVGFCSTFGFDLFYLEDEEQRE
NAVLLMNQAKIEANSFWIIGSYNNTLFRRNETTLELPFKPPKKCLYLTRS
GSEHVALCRKKYYFICSKTKPDPTTTTPPTTTTTSTTTTTTPTTTTTTTT
TTPATTTTTTTTIPTTTTTTTPTTTTTTPTTTTTTPTTTTTITTPGISIG
LSEWTSWSNCSTVCTRGVQSRYRTCYDGVNVYNHTSVNITTQCNVTLLDQ
KLCLVRDNCWISGYFLAFNQSCKRFCSNVGLRCDAEIETGNLATIFNDFY
LDFVDDVTNAVWNASYAPYCYKKKCAQYVNVPEHVHCYVDPPDGYERLCL
CKENKDVGFGEWSPWSACTSRCSGGTQFRTRTCWDKCVGSTWETKACGED
QCPVHGGLSQWSKWKDCDKPCGGGWIKRHRACDNPAPKNNGRFCLGSLEE
KVECNVHFCPVDAVWTSWSHWSGCNKPCSGGAVKRKRQCTQSLYGGNNTC
NDGIGPGKSCNPATCPHIDATVTLKLDYPMTSAINDQNSAEYKKFQNVFL
KNVRTAFEDGELEHALGNITLHSVDPVTRQVNFSVHFHKLDGYEMLFLQD
SIEKDGSLGKLEVVKSFKPTYGLSEGVPSGRPTNVKVHATSPNAVTISWV
DVPGMDNYVIFYKNIRTQSFQLETYGAANNPANLTWLMPGTTYAFFVVGY
VKNVGNGISSEIRYCKTHEKVPKSAPSITKVEAQASSYVSIEWYGIPRDD
FNGEPLGYFIQVYSNETLQCTFNVSAMESNYVIKRGLTPSTPYVISVCAY
NNMGRGPHERASVTTKPSPPTLPPRNFTESLIKSHDHVEMSWQMPPTNGI
HGDLMSYIVIARPTSPQSTARLAYYPVHGASTSVLIEYLEANTEYNVSIA
ALNQFGIGEKAQIITKTCQCPATVSSNYYLLPPYLHMIGKKMHGVFYEVL
KQMIPQACGICNRAPGQSPTTSLDMYKNGRGSYSLKINELRVILNMDEHT
DLSFPIIGTKNQRYFMGYPYVSLVDYPGAVLIVKDKTLEEIVSGKVWLMM
CACWPLLLLMLLMSVAMSLLVWLLESSSNRNQKTPPESSFDYSLVKGTKE
SWYWSIITLGTQGYGDFAPQSYLGRACTITWMFISLITCALFTAAIIATL
SSPDSSSKAQLYGKMVGALNGSFEQKIALQRNGKVNQKNIYTSIHQLQKA
LSEGEIEVVILDAFTAGTHKLEFQHSLLRVAKVLDVPRTYGFVLSGDLAN
SHDKFRSYVKDNENLIFEILKNSTTPITGTEPYIEKSIMDPSSEVLKHLM
VTMGGILFVLYVLGCLYDYINRRKDKKHPEIMAMKKLERDKIAMEQFVTD
FVNRYTKTIENILSKHDSQIGTHIIIQRLFKCKTRLSKACCPPRDDCESQ
ELLVWYEVDNDKTLIRKGGNAIEEEKPPDPPKEDDTFLNEVLTHLYHMQV
LIDKTLSQNRYQRSLKNKDENNDSYDEDADCTGDYDEMLTERTILDDSFV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011392XLOC_011392Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020293TCONS_00020293Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR000884TSP1_rpt
IPR013783Ig-like_fold
IPR001320Iontro_rcpt
IPR013099K_chnl_dom
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0004970 ionotropic glutamate receptor activity
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 923..1006
e-value: 0.0022
score: 27.2
coord: 829..907
e-value: 3.5E-5
score: 33.2
coord: 1021..1108
e-value: 3.0E-5
score: 33.5
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 924..1007
e-value: 2.6E-8
score: 34.0
coord: 1023..1109
e-value: 1.6E-7
score: 31.5
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 925..1021
score: 14.265
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1023..1123
score: 18.02
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 831..920
score: 13.034
IPR003961Fibronectin type IIICDDcd00063FN3coord: 1023..1115
e-value: 1.11566E-8
score: 53.6543
IPR003961Fibronectin type IIICDDcd00063FN3coord: 830..917
e-value: 5.58441E-8
score: 51.3431
IPR003961Fibronectin type IIICDDcd00063FN3coord: 924..1015
e-value: 1.32945E-8
score: 53.2691
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 924..1117
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 824..930
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 665..716
e-value: 0.061
score: 20.1
coord: 401..449
e-value: 1.4E-4
score: 31.3
coord: 559..603
e-value: 3.2E-5
score: 33.4
coord: 608..660
e-value: 5.0E-10
score: 49.3
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 560..602
e-value: 9.6E-5
score: 22.4
coord: 667..715
e-value: 0.0044
score: 17.1
coord: 609..659
e-value: 1.1E-8
score: 35.0
coord: 402..426
e-value: 3.5E-5
score: 23.8
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 661..716
e-value: 1.5E-6
score: 28.0
coord: 553..603
e-value: 3.5E-6
score: 26.8
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 399..538
e-value: 4.7E-7
score: 29.5
coord: 604..659
e-value: 1.3E-13
score: 50.5
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 605..660
score: 12.013
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 662..716
score: 10.169
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 556..603
score: 11.346
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 398..457
score: 8.418
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 401..436
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 659..715
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 559..597
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 602..659
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 825..922
e-value: 1.1E-13
score: 51.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1017..1126
e-value: 9.2E-13
score: 47.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 923..1016
e-value: 5.4E-14
score: 51.7
IPR001320Ionotropic glutamate receptorPFAMPF00060Lig_chancoord: 1258..1355
e-value: 4.6E-8
score: 32.9
NoneNo IPR availableGENE3D1.10.287.70coord: 1234..1352
e-value: 8.0E-16
score: 57.0
NoneNo IPR availableGENE3D3.40.190.10coord: 1353..1428
e-value: 3.6E-4
score: 20.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 322..389
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..183
NoneNo IPR availableCDDcd00037CLECTcoord: 212..318
e-value: 0.00295595
score: 37.2142
NoneNo IPR availableCDDcd00037CLECTcoord: 42..137
e-value: 0.00691192
score: 36.0586
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 1249..1355
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 1344..1452
IPR013099Potassium channel domainPFAMPF07885Ion_trans_2coord: 1300..1350
e-value: 2.3E-9
score: 37.0
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 186..321
e-value: 1.1E-7
score: 31.3
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 25..111
e-value: 0.0016
score: 17.9
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 6..140
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 199..329

Blast
[Close]
BLAST of TCONS_00020293-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 3.057e-40
Identity = 106/350 (30.29%), Postives = 145/350 (41.43%), Query Frame = 0 
Query:  400 GLSEWTSWSNCSTVCTRGVQSRYRTCYDGVNVYNHTSVNITTQCNVTLLDQKLCLVRDNCWISGYFLAF-------------NQSCKRFCSNVGLRCDAEIETGNLATIFNDFYLDFVDDVTNAVWNASYAPYCYKKKCAQYVNVPEHVHCYVDPP-------DGYE-RLCLCKENKDVGFGEWS---PWSACTSRCSGGTQFRTRTCWD--------KCVGSTWETKACGEDQCPVHGGLSQWSKWKDCDKPCGGGWIKRHRACDNPAPKNNGRFCLGSLEEKVECNVHFCPVDAVWTSWSHWSGCNKPCSGGAVKRKRQCTQSL-YGGNNTCNDGIGPGKSCNPATCP 716
            G S+W++W  CS  C +G+Q R R C   +        N    C  + L+ + C  +  C + G +  +             NQ+  R C+N  ++       GN   I      +      +  W+A        + C +       + C   PP       DG E ++ +C E      G+W+    WSAC+  C GG + RTR C D        KC GS  ++  C  D CP HG  S WS W  C + C GG ++R+R CDNP P N GR C G   +   CN   CPVD  W SW  WS C+  C GG   RKR C   +   G   C         CN   CP
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPL------PANGGKPCQGSDLEMRNCQNKP-CPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEII---MCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARL-CNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869

HSP 2 Score: 95.9005 bits (237), Expect = 1.874e-19
Identity = 47/114 (41.23%), Postives = 53/114 (46.49%), Query Frame = 0 
Query:  604 VHGGLSQWSKWKDCDKPCGGGWIKRHRACDNPAPKNNGRFCLGSLEEKVECNVHFCPVDAVWTSWSHWSGCNKPCSGGAVKRKRQCTQ-SLYGGNNTCNDGIGPGKSCNPATCP 716
            VHGG SQWS W+ C   CG G  KR R C+ P P N G+ C GS  E   C    CPVD  W+ WS W  C + C  G   R R C   S+  G   C         CN   CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641
The following BLAST results are available for this feature:
BLAST of TCONS_00020293-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN13.057e-4030.29Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
back to top