TCONS_00027756-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027756-protein
Unique NameTCONS_00027756-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027756-protein ID=TCONS_00027756-protein|Name=TCONS_00027756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MAMVNVNRKVTDSFYRYKMPKIIAKVEGKGNGIKTVIVNMVEISKSLARP
PAYPTKFFGCELGTQTQIDKKNGRFIVNGSHDGDKLQDILDIFIEKFVLC
DECDNPETTFIVQPKREKITSTCSACGHSSLIDMRHRLSTFILKNPPEGE
DATPQKLKKLKKEKGEKNVQNGQASPTETDESGFDGWSDELPTASKTNED
DWSTDTSAEAVRDRMSKLGVGVKGLTHNQDLEKSTEKRFEIFFEFVKGKV
NEEKISDKDIVAEAERLDIKDRAVLALAELLFNKDILTQIPKYRVLFLRF
LVNNQKAQKHFMGAFEILVGDAHKEDLLPKTTRILNVLYDQDYIEEEVLL
EWGAKVSKKYVSKKTCEQIHAKAKPFLDWLKTADEEESDDDDEGVEVVYT
ERSEQAVLKEEAIKKEQAAKQTNNTSAANIEEDDIDIDDI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015672XLOC_015672Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027756TCONS_00027756Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003307W2_domain
IPR002735Transl_init_fac_IF2/IF5
IPR016189Transl_init_fac_IF2/IF5_N
IPR016190Transl_init_fac_IF2/IF5_Zn-bd
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003743translation initiation factor activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003307W2 domainSMARTSM00515542_3coord: 295..386
e-value: 7.9E-26
score: 101.8
IPR003307W2 domainPFAMPF02020W2coord: 307..390
e-value: 3.5E-20
score: 71.8
IPR003307W2 domainPROSITEPS51363W2coord: 232..390
score: 27.715
IPR002735Translation initiation factor IF2/IF5SMARTSM00653eIF2Bneu4coord: 14..129
e-value: 3.1E-55
score: 199.5
IPR002735Translation initiation factor IF2/IF5PFAMPF01873eIF-5_eIF-2Bcoord: 8..128
e-value: 1.1E-39
score: 134.9
IPR016189Translation initiation factor IF2/IF5, N-terminalGENE3D3.30.30.50coord: 31..79
e-value: 1.7E-25
score: 87.9
IPR016189Translation initiation factor IF2/IF5, N-terminalSUPERFAMILY100966Translation initiation factor 2 beta, aIF2beta, N-terminal domaincoord: 3..100
NoneNo IPR availableGENE3D1.25.40.180coord: 231..408
e-value: 1.6E-30
score: 105.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 415..440
NoneNo IPR availableCDDcd11561W2_eIF5coord: 232..383
e-value: 2.06787E-46
score: 158.163
IPR016190Translation initiation factor IF2/IF5, zinc-bindingSUPERFAMILY75689Zinc-binding domain of translation initiation factor 2 betacoord: 97..132
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 240..384

Blast
[Close]
BLAST of TCONS_00027756-protein vs. Swiss-Prot (Human)
Match: IF5 (Eukaryotic translation initiation factor 5 OS=Homo sapiens GN=EIF5 PE=1 SV=2)

HSP 1 Score: 384.03 bits (985), Expect = 9.540e-131
Identity = 217/419 (51.79%), Postives = 283/419 (67.54%), Query Frame = 0 
Query:    4 VNVNRKVTDSFYRYKMPKIIAKVEGKGNGIKTVIVNMVEISKSLARPPAYPTKFFGCELGTQTQIDKKNGRFIVNGSHDGDKLQDILDIFIEKFVLCDECDNPETTFIVQPKREKITSTCSACGHSSLIDMRHRLSTFILKNPPEGEDATPQKLKKLKKEKGEKNVQNGQASPTETDESGFDGWSDELP--TASKTNEDDWSTDTSAEAVRDRMSKLGVGVKGLTHNQDLEKSTEKRFEIFFEFVKGKVNEEKI--SDKDIVAEAERLDIKDRAVLALAELLFNKDILTQIPKYRVLFLRFLVNNQKAQKHFMGAFEILVGDAHKEDLLPKTTRILNVLYDQDYIEEEVLLEWGAKVSKKYVSKKTCEQIHAKAKPFLDWLKTA----DEEESDDDDEGVEVVYTERSEQAVLKEEAIK 414
            VNVNR V+D FYRYKMP++IAKVEGKGNGIKTVIVNMV+++K+L RPP YPTK+FGCELG QTQ D KN R+IVNGSH+ +KLQD+LD FI+KFVLC EC+NPET   V PK++ I ++C ACG+  ++D  H+L TFILKNPPE  D+   K +K KK +  K+ +NG  S +ET            P  T  +  +DDW  DT+ EA R RM ++    K LT + DLE++ E+R  I F+FVK K  E  I  SDK+IVAEAERLD+K    L L E+LFN+ I  QI KYR  FLRF  NN+KAQ++ +   E +V   H+  L+ K   IL  +YD D +EEEV++ W  K SKKYVSK+  ++I  KA+PF+ WLK A       E +D+DE +EVVY++ +  +V K E +K
Sbjct:    3 VNVNRSVSDQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRGMLDTHHKLCTFILKNPPENSDSGTGKKEKEKKNRKGKDKENGSVSSSETPPPPPPPNEINPPPHTMEEEEDDDWGEDTTEEAQRRRMDEISDHAKVLTLSDDLERTIEERVNILFDFVKKKKEEGVIDSSDKEIVAEAERLDVKAMGPLVLTEVLFNEKIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECVVA-MHQAQLISKIPHILKEMYDADLLEEEVIISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEAEEESSGGEEEDEDENIEVVYSKAA--SVPKVETVK 418
The following BLAST results are available for this feature:
BLAST of TCONS_00027756-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF59.540e-13151.79Eukaryotic translation initiation factor 5 OS=Homo... [more]
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