TCONS_00027896-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00027896-protein
Unique Name	TCONS_00027896-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	482

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00027896-protein ID=TCONS_00027896-protein|Name=TCONS_00027896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp
MDDSGVDLFGSGLDVNDDVKFNIQNTEDLFSMKPSTGFFGHINRNESTYS
KDVRSNLFGGLTSSFTTSLDVSLDIPDLKEQPSIDISLPTDTKDFYELSS
DEGFFETMTTNNSTLSSTPRTENYIQSLDLLDEALKENPDQKSTLAWESK
GSYNERLDNNFLVELGDEAFDRMYKIKMGELEKLTGKRVVETKVSVDKVF
RDTLNVLIGVQSSSYTFLPVSFSLVASKNIHCTGLSSDALHSLMAKFASL
GTHYRQLRKFCSQHADRPKTGHSGGSLLKAFIDAMKEILQSYWFAVFSAS
EMKMVLTELWHLFEPFSKQFKLLADICLCSEAFRRTGGGGGGGGGGRGCN
KPKFPVGPALLSYLYSLAVKNSSTEHFRMLLYLFRCTSIPYINFISEWLF
HGVCRDQYDEFFVQLDQQYLSYRDKYFWSQGFRMKESKASVPLFLDGLAN
QIFSCGKAINLLKLTNIQVILYIGVAKYPAVS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015767	XLOC_015767	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00027896	TCONS_00027896	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007259	GCP

Vocabulary: **Biological Process**
Term	Definition
GO:0000226	microtubule cytoskeleton organization
GO:0007020	microtubule nucleation

Vocabulary: **Molecular Function**
Term	Definition
GO:0043015	gamma-tubulin binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000922	spindle pole
GO:0005815	microtubule organizing center

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0007020	microtubule nucleation
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0000922	spindle pole
molecular_function	GO:0043015	gamma-tubulin binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007259	Gamma-tubulin complex component protein	PFAM	PF04130	Spc97_Spc98	coord: 202..464 e-value: 3.0E-38 score: 131.9

Blast

[Close]

BLAST of TCONS_00027896-protein vs. Swiss-Prot (Human)
Match: GCP6 (Gamma-tubulin complex component 6 OS=Homo sapiens GN=TUBGCP6 PE=1 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 8.379e-64
Identity = 143/440 (32.50%), Postives = 228/440 (51.82%), Query Frame = 0

Query:   34 PSTGFFGHINRNESTYSKDVRSNLFGGLTSSFTTSLDVSLDIPDLKEQPSID---ISLPTDTKDFYELSSDEGFFETMTTNNSTLSSTPRTENYIQS-LDLLDEALKENPDQKSTLAWESKGSYNERLDNNFLVELGDEAFDRMYKIKMGELEKLTGKRVVETKVSVDK---VFRDTLNVLIGVQSSSYTFLPVSFSLVASKNIHCTGLSSDALHSLMAKFASLGTHYRQLRKFCSQHADRPKTGHSGGSLLKAFIDAMKEILQSYWFAVFSASEMKMVLTELWHLFEPFSKQFKLLADICLCSEAFRRTGGGGGGGGGGRGCNKPKFPVGPALLSYLYSLAVKNSSTEHFRMLLYLFRCTSIPYINFISEWLFHGVCRDQYDEFFVQLDQQYLSYRDKYFWSQGFRM--KESKASVPLFLDGLANQIFSCGKAINLLKL 464
            P+ G F   +     + +D R +LFG L  S T  +DV L +P + +   +    I +P    D +E   DEGF      + S L+   ++E  +   +DL + AL     ++    WE  G      +  +L E G +AFD+  ++  GEL+ L G  +   +  + K   + +D LNVLIGV S++++    + + V  + +H +G S +++ SL+++ A  GT Y +L  F  Q      + +S G + +AF   ++  LQ Y   V S      +LT +  LF+   +Q + LA++C        T GGG          +  FP G  LLSYLY  A+ N S EH+ +LL L + +  PY  FI +W++ GV RD Y EF +Q++ +YLS+RDK +W+ G+ +  KE +  VP+FL  +A+ I+ CGK INLLKL
Sbjct:  191 PTVGLFSFGDPCGDRFERDTRVSLFGALVHSRTYDMDVRLGLPPVPDNADLSGLAIKVPPSV-DQWE---DEGF-----QSASNLTPDSQSEPSVTPDVDLWEAALTYEASKRR--CWERVGCPPGHREEPYLTEAGRDAFDKFCRLHQGELQLLAGGVLQAPQPVLVKECELVKDVLNVLIGVVSATFSLCQPAQAFVVKRGVHVSGASPESISSLLSEVAEYGTCYTRLSHFSLQPVL--DSLYSKGLVFQAFTSGLRRYLQYYRACVLSTPPTLSLLT-IGFLFKKLGRQLRYLAELCGVGAVLPGTCGGG---------PRAAFPTGVKLLSYLYQEALHNCSNEHYPVLLSLLKTSCEPYTRFIHDWVYSGVFRDAYGEFMIQVNHEYLSFRDKLYWTHGYVLISKEVEDCVPVFLKHIAHDIYVCGKTINLLKL 607

The following BLAST results are available for this feature:

BLAST of TCONS_00027896-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00027896-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GCP6	8.379e-64	32.50	Gamma-tubulin complex component 6 OS=Homo sapiens ...	[more]

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TCONS_00027896-protein (polypeptide) - C. hemisphaerica