TCONS_00027951-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027951-protein
Unique NameTCONS_00027951-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027951-protein ID=TCONS_00027951-protein|Name=TCONS_00027951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MDKVVQTENLKDTFVYVDNITIAGRSKEEHDQNVKNFHAAREKYNLTLNP
DKTISSTQSITLLGYIVSNNSISPDQRRLQPLLDMPPPTNLKSQKRVIGM
FSYYSKFIDKFSEKIRTLNKNTIFPVPKPVLDAFNVLKEDLKNATLQPID
PETPFVVETDASDFCIAATLNQNGRPVAFFSRTLKNNEIKHDSVEKEAAA
IVESIRDWRHFLIGRKFKLITDQRSISFMFDNRRRSKIKNAKIARWRLEL
SQYKYDISYRPGSENLVADTFSRIAAMCHPLQELRNLHEQLCHPGITRLS
HFVRQRNLPFSQEQIKTVTNTCKSCMFHKPKFLNSQGTLINATAPFQKLN
IDFKGPLPPSKRGNRFLLTLIDEYSRFPFAFPCKDTKSSTVNQCFNNLFS
MFGMPEMVHNDRGTDFLSEETQSYLLSKSIATSKTIQKVTVKLRD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015810XLOC_015810Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027951TCONS_00027951Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
IPR000477RT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 444..445
NoneNo IPR availableGENE3D3.30.70.270coord: 1..72
e-value: 2.0E-12
score: 46.6
NoneNo IPR availableGENE3D3.30.70.270coord: 73..191
e-value: 2.9E-19
score: 68.7
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 156..275
e-value: 2.10392E-46
score: 156.884
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 12..260
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 337..437
e-value: 4.2E-21
score: 74.9
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 339..434
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 343..432
e-value: 1.2E-11
score: 44.8
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 341..445
score: 13.351
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..67
score: 9.511

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027951-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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