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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027167 ID=TCONS_00027167|Name=TCONS_00027167|organism=Clytia hemisphaerica|type=transcript|length=1716bp
TGGTGTTATCGTCTTATTACTAAAATGGCGAAATAATGAGAAAAAGTATA
TCCCACCTTCAAGTACATCAAAAACAGAAACTGGGAGTACGGTGGGAGGA
AACTTTTACGAATATGCATCAACTAAAGAACTTCAACCTTCATCAAATTA
TCACTCGAACGGTCATAGCGAGCTGAAGCACGTGGCGAGTGATAAAAAAC
CTGTTTTGCCAGAGcgGAACTCGCCAACCCAGGACACATACACCAGTCTT
GAGCTGTCAGCAACTCCAATAAACCTCTACCACCCTCTCTCATTGGAGTC
TCCATCCGAGGAGAAAGCACCCTCTAACCAGCCACCACCGGCAATCAGGG
ACCCTCTCTATTTCGAAACAGAACCTATATATTCAGAGACACTTACACCT
CAAATTAAAAGAAGGCAGGAACCTCTTTATCATGAGACTGTACCCGACCC
TCCACCAGGAGGGAACTTGACACCGCCCCTCCAGAATGAGACACCACCTC
CAATACCTACTAGTAGGCGACCATCAGCTATCTTCTATCCACCTGGTACT
GTATTTATCAACGAAGGTATGAAAGCTGATTCGAATGTTTGAAGAATGAT
GGaaatgaataatttgaaaatgaataGAGAAGATTTTGGAGCTACTCATT
GCACGAGCATGTCACATCGAGAAtttcttcaataaaaactaTGCATTTCA
CTCGAAGAACTAATTAACTTTGTATGGTCTGACGAAGTTTTAACTTATTT
CAACCTCTCAGCACCTAAAAAGCATCATATCGAAAAACTCGATGTATCCG
ATAGCCGACAGCAACTGCTACTTATGGAACATATTCCGAATGTCTTCGAG
GTCAAACGTCATAAAGATACTTATGCTTCCTTTGAGAAAATCACAAAGTT
TGAAGTAGTGCTCAATGTTATTTTGAAGCAATTCAAGTTCGTAAATTTTT
ACAACATTCGCTGCGCTAGTCCCTACCCCCAATCACAAATCGCAATAATC
GCATTTCCTTATCACAAATCAGATAAGTTATAGAACTAAGTTAAATTAAT
GATTACAATGATGAAATATATCcattaaataaaattgaagtaaGTAAGAT
AGAAAATAGACTTTAATATTACTGGAAATTTTTTACCGTAGACGGGACCT
AAATATTCAAAGTAGCCCTGCCGATATTTTAGTCTTTTCTTTAACCATCT
CGGGAAgtataacctgataacagctattaataattttcttacacGCACGG
TAatcctctgaaggcgcttgaaatttaaccatctgaggaaaatagtcctc
ccgggAAATTCTACAACAAGTATATTGTTGTTcaccagaaagtcaaaaac
taaaattttcctGATATAGCGCCTTATTTTCAAACGCAATCACgtaactt
tgttgtcattcccagtcctttgaAATATCAATTCTGGTCATTGGGTCTAT
TCTGAGCTTGACGACATGACGAAATTGACGAGCGCGGTCTTTCCGAAATC
GAggttgcatattcgtcagattgttttgttttcacccatacctttagagc
ttcagcgtggtgggcagaaaataATCACAATATGATCTCAGGTTAAGGAA
GTACAACACGTGAAGGGTAGTTTATCAAACACTATTTATTATGGAAAATA
GTAGTTTATCGTATTATAGGATTCACTACAGTTGatacgctctctaattc
gacgttctagtTTTCG Run BLAST on NCBI transcript from alignment at sc0000608:36528..39444- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027167 ID=TCONS_00027167|Name=TCONS_00027167|organism=Clytia hemisphaerica|type=transcript|length=2917bp|location=Sequence derived from alignment at sc0000608:36528..39444- (Clytia hemisphaerica)
TGGTGTTATCGTCTTATTACTAAAGTATGTTTCTTTTCAGTTTAACGTTA
ACAAAACATTTCATTTTAAAACTTTAAAGCAACCGTTATTATAACAATAG
CGTTCAGTGTGAGGTCGTTGTTGTTATTTTCTGCCTGCGTAGTTTGATTA
TTCGCCCGATAGTGTCATTTGGGAAAATGGCACTAGAGGGCTAATAATCA
AACTGCAAGGGCAGAATTAATGACAACAACGAACGGGTATGACAATTTGA
GTCACAAAACCTTTCAATACTGCCCGCCGATTGAACCTTTAATGGCTTAC
TTAATGACCGCTGGATGGATAATATTTAGCAATAACTACAACGTAAATTT
AACGTTAAAATAACATTTTTGTGCCAGCTAGGTGAAGAGTCTTTCCATTT
ATAAAACTATGCTAAACTACGATTATTTCAATCGTTCAAAGGCTTATAAA
GTGATATTTTGCTATGAGGTTTTTCCATTTCTTCTTTAAAAGAGTAATTT
TCCTATAGGACCTACAATCATCCACTAAATATTTGAGACAAAGGGGAGCT
CCCGGTGTAATTTTGAACACCACAATTGATTTTTAAGCGCCTTAAACTAC
AGTTGGAAAGTAGAGTTTTAACCCTGAGTTTTAACATGAAACTTAAGACT
TACGACCTTAGGCTTGGAATATAGCCTAGAAGCCACCAAACCCCTCTAAA
ATCGAAATATTCAATGGAAGAAAATGGAAGTGCTAAAATAGCAATTGTCG
CCCGAACTTTAAATTCTGAAAAACGTTAAAATACACTAAAATCTCAATAT
ATTTTGAGGGTGATTGCAGATTTTCCAGGTGGGTCTACATATAATGAGAT
GTAGATTAATCGTTTTAAACGTCTCTTTTCCTTCTTTCAGATGGCGAAAT
AATGAGAAAAAGTATATCCCACCTTCAAGTACATCAAAAACAGAAACTGG
GAGTACGGTGGGAGGAAACTTTTACGAATATGCATCAACTAAAGAACTTC
AACCTTCATCAAATTATCACTCGAACGGTCATAGCGAGCTGAAGCACGTG
GCGAGTGATAAAAAACCTGTTTTGCCAGAGGTAAAGTATTCGTTATGCTT
TTGATGAGCACATCATAGTATCGATATATAATAATCAAGGACATTTAGGC
ATTCTTTCAATTGTTTTCACGAGGCCTCTGACCAACCAGCTCGGATATAT
ATTACCCAGCTGACACACAACGTTGTTTCAACGTTCATCTAACATTATAT
GGACGTTGTGAGCATTAGAAAAACGTCAAAACAACGTTGTGTGCCAGCTG
AGTTAAGATTTCGGTTCATGTATGATATCTTCCCAAATTGAGTAAATTCT
TCAAAAATAAATTTAATTTTTTTTTGAGTTGATTTTTATGGAAAATTTAT
ATTTTCTCTTTTTAGCGGAACTCGCCAACCCAGGACACATACACCAGTCT
TGAGCTGTCAGCAACTCCAATAAACCTCTACCACCCTCTCTCATTGGAGT
CTCCATCCGAGGAGAAAGCACCCTCTAACCAGCCACCACCGGCAATCAGG
GACCCTCTCTATTTCGAAACAGAACCTATATATTCAGAGACACTTACACC
TCAAATTAAAAGAAGGCAGGAACCTCTTTATCATGAGACTGTACCCGACC
CTCCACCAGGAGGGAACTTGACACCGCCCCTCCAGAATGAGACACCACCT
CCAATACCTACTAGTAGGCGACCATCAGCTATCTTCTATCCACCTGGTAC
TGTATTTATCAACGAAGGTATGAAAGCTGATTCGAATGTTTGAAGAATGA
TGGAAATGAATAATTTGAAAATGAATAGAGAAGATTTTGGAGCTACTCAT
TGCACGAGCATGTCACATCGAGAATTTCTTCAATAAAAACTATGCATTTC
ACTCGAAGAACTAATTAACTTTGTATGGTCTGACGAAGTTTTAACTTATT
TCAACCTCTCAGCACCTAAAAAGCATCATATCGAAAAACTCGATGTATCC
GATAGCCGACAGCAACTGCTACTTATGGAACATATTCCGAATGTCTTCGA
GGTCAAACGTCATAAAGATACTTATGCTTCCTTTGAGAAAATCACAAAGT
TTGAAGTAGTGCTCAATGTTATTTTGAAGCAATTCAAGTTCGTAAATTTT
TACAACATTCGCTGCGCTAGTCCCTACCCCCAATCACAAATCGCAATAAT
CGCATTTCCTTATCACAAATCAGATAAGTTATAGAACTAAGTTAAATTAA
TGATTACAATGATGAAATATATCCATTAAATAAAATTGAAGTAAGTAAGA
TAGAAAATAGACTTTAATATTACTGGAAATTTTTTACCGTAGACGGGACC
TAAATATTCAAAGTAGCCCTGCCGATATTTTAGTCTTTTCTTTAACCATC
TCGGGAAGTATAACCTGATAACAGCTATTAATAATTTTCTTACACGCACG
GTAATCCTCTGAAGGCGCTTGAAATTTAACCATCTGAGGAAAATAGTCCT
CCCGGGAAATTCTACAACAAGTATATTGTTGTTCACCAGAAAGTCAAAAA
CTAAAATTTTCCTGATATAGCGCCTTATTTTCAAACGCAATCACGTAACT
TTGTTGTCATTCCCAGTCCTTTGAAATATCAATTCTGGTCATTGGGTCTA
TTCTGAGCTTGACGACATGACGAAATTGACGAGCGCGGTCTTTCCGAAAT
CGAGGTTGCATATTCGTCAGATTGTTTTGTTTTCACCCATACCTTTAGAG
CTTCAGCGTGGTGGGCAGAAAATAATCACAATATGATCTCAGGTTAAGGA
AGTACAACACGTGAAGGGTAGTTTATCAAACACTATTTATTATGGAAAAT
AGTAGTTTATCGTATTATAGGATTCACTACAGTTGATACGCTCTCTAATT
CGACGTTCTAGTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027167-exon-sc0000608-1575043694:39421..39444 | TCONS_00027167-exon-sc0000608-1575043694:39421..39444 | Clytia hemisphaerica | exon |
| TCONS_00027167-exon-sc0000608-1575043694:38365..38554 | TCONS_00027167-exon-sc0000608-1575043694:38365..38554 | Clytia hemisphaerica | exon |
| TCONS_00027167-exon-sc0000608-1575043694:36528..38029 | TCONS_00027167-exon-sc0000608-1575043694:36528..38029 | Clytia hemisphaerica | exon |
| TCONS_00027167-exon-sc0000608-1510915933:39421..39444 | TCONS_00027167-exon-sc0000608-1510915933:39421..39444 | Clytia hemisphaerica | exon |
| TCONS_00027167-exon-sc0000608-1510915933:38365..38554 | TCONS_00027167-exon-sc0000608-1510915933:38365..38554 | Clytia hemisphaerica | exon |
| TCONS_00027167-exon-sc0000608-1510915933:36528..38029 | TCONS_00027167-exon-sc0000608-1510915933:36528..38029 | Clytia hemisphaerica | exon |
| TCONS_00027167-exon-sc0000608-1491911889:39421..39444 | TCONS_00027167-exon-sc0000608-1491911889:39421..39444 | Clytia hemisphaerica | exon |
| TCONS_00027167-exon-sc0000608-1491911889:38365..38554 | TCONS_00027167-exon-sc0000608-1491911889:38365..38554 | Clytia hemisphaerica | exon |
| TCONS_00027167-exon-sc0000608-1491911889:36528..38029 | TCONS_00027167-exon-sc0000608-1491911889:36528..38029 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000608 | supercontig | sc0000608:36528..39444 - |
Blast
The following BLAST results are available for this feature:
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