TCONS_00028573-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00028573-protein
Unique NameTCONS_00028573-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00028573-protein ID=TCONS_00028573-protein|Name=TCONS_00028573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
YFFSQSELALGFYELTDELKAKLLARLLRDRALTFYRTLDPAVRDDYDNL
KQALTNEFDVPQIKYRKRQLLPQISQQGDPVSTYLSRLEKLSQNLEVPEQ
TKMDIMIAGLDTGYRNYIQMKQPNTYSEATHALLLKEAVNPPNDVMKDVL
KTVQAIHQNQNTKGKHNADTRRVIDNRRSHQQETQRRIACYYCQKPGHAM
ADCRKRIRDDSRPRFIPSQVNRYNTPNRYNTPDPYQAPNQYRNAAPPAYS
SKTRQPKPEVTCFKCKKTGHYAIECPVNVKSE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_016205XLOC_016205Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00028573TCONS_00028573Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR005162Retrotrans_gag_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 261..277
e-value: 2.7E-4
score: 30.3
coord: 189..205
e-value: 0.0039
score: 26.1
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 250..281
e-value: 1.1E-7
score: 31.3
coord: 177..242
e-value: 8.1E-6
score: 25.3
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 261..276
e-value: 1.3E-5
score: 25.0
coord: 189..205
e-value: 5.2E-4
score: 19.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 190..205
score: 9.043
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 262..276
score: 9.669
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 181..209
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 247..277
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 25..111
e-value: 7.5E-10
score: 38.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 216..254

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028573-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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