TCONS_00028279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028279
Unique NameTCONS_00028279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1024

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028279 ID=TCONS_00028279|Name=TCONS_00028279|organism=Clytia hemisphaerica|type=transcript|length=1024bp
GTTTGAAATCATACAAActctggttgttttttcatcggttgactcaaaaa
aactttgatttgaACATATTTACTAAGCGATCCTCAAGGCCAAACAAATT
TTCACCGAGAATCTTGATATCCAGATACTTGCTTTCATCAGGATGGTGAG
AGCGTGCGAATCTCACTTCGGTGCCACCTCGCTGGCTGAAgATTTCGACG
AATCGAAATGGCTATGGCCCGAAGCAACACGGAAAGACGTCACGATGCGT
TTGAGTGGCACGCCTGACGGATCGTTTTGTATAAGACAGTCGGAACGATG
TAGAGGCGAATGGACATTAACAGTCAGGAAAGAGGGTCGCGAAAGACTCA
TTCGTATCATACAACGGAACCAGAACGGCGCCCCTTGTTTCGGCTTCCGT
GAAGAACTTCTCAATTTCGGTAGCTTAGAGGACTTGGTTTTACATTTCCG
TGATAATTCGCTGGAAGATTACAACTCCAAGTTAAACATCAAGCTACTGC
ACCCGTGCGGGAAACCTGACCAATTAAATaTAACAGAAGGTCAACAAGAC
ATGTTAGTGGACCAGGCGAGATACGAAGAGTTGGTGGAGAAACTCAATCA
CATCAAATTCATGGAACTGAAGCTCGAAGAACAACAATTGGCATTAGAAG
AATGTAAAACGTTAGTAGAATCGCAGACAGATGTGGTCAACTTCTTGGAG
GAACAGATGGAACTCGCTGAAAGGATCAAGAAAGAAGCTCCCACTAGTGA
TAAGTCAGATTTGGAGAACAGTATTGTGAGCATGAAAGAATTTTTGAACA
TGGAGAAAGCGAAATGGCACGAGATGGATGATATGTTGACCAAACTGAAG
CAAGAATGCGACCAGATCAGTACACAATTGACGGAGTTGAGTGCAGGAGT
ACCTGGACTGACAGACGAGTATAACCAATTGGAAAGaTTATTACAGAAGA
ACGATCCGAACCTGTTCGCAGAGAAACATGGGGAAGACGGACTCGAAGAA
AAAGACATGCAAAAATTCGAAGTG
Run BLAST on NCBI

transcript from alignment at sc0000672:119574..128058+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028279 ID=TCONS_00028279|Name=TCONS_00028279|organism=Clytia hemisphaerica|type=transcript|length=8485bp|location=Sequence derived from alignment at sc0000672:119574..128058+ (Clytia hemisphaerica)
GTTTGAAATCATACAAActctggttgttttttcatcggttgactcaaaaa
aactttgatttgaACATATTTACTAAGCGATCCTCAAGGCCAAACAGTTG
AGTCCAATGTTATTTATCTTCCATTGGGTCTTATTAGAAAGTAGTCAGAC
TCTAACTTAAAACTTTGAGGTTTATttgttaatttcgcttagcgaaagta
ttacgatagccttccgtgtgtctggctggcgagacattttttagggcgca
aattatggcgtgggcgtttggctgNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtataaaggagtcaaagt
ttaatctcaaggagtattatttctttaaagcttaaagttggctagttttt
accctgcaattttctagtccagaagctggagctaGAGCTCAACTtcactc
atttttttataagcataacgtttataagcatactgaagctcaaatttcca
gaaaaattaagcatatgctaagcataccttgaggctcacccaaagaaatt
tttagaatcataatttcccaaacttcagaaaataacacaagaatgaagaa
gagagttacaaacaaaattcgaaaaattggtgattttattttgtttaatc
tcttataaataacacaacttGGTCTCTTGAGAATGTACACTATCTAAACT
TACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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cgtcttcgtcgttgatgttcaagtattatgcgaaattttcgactttaagt
cgtcttgttttagTTTGAATAAGTAGATGCAAAGTTGCAATGTTGCAAAC
TGTTGAGATGTTATAACTTATTATTAAAAACTTTTACAGAGAGGTTATTC
AATGAATTAGCTTTTAGTTCAACCTGGTTCAACCAAGATTATGTTTGGCT
TTAATGAGGAGAGTCAAATGTCCGAAGTTTCTTTCTTAGTCATCTGTTAC
TTAAATTAATGAATATGGAAAAGGACTAGTCCCggaaatataatatttta
tacGCATgttgttctgttttttttttctcatatgAGTGCTTTTTATTTCA
TGAGACATTTTTTTTCGTCTCTTTTTTAACGCGATCTTGCAGCAAAATAC
AATCTGTGACTAAAATTGTGGACTTTCCTTGGAAAATCCCTCCCCCTCCT
AACATCAATGTTGATGAGAGGATTTTGTGGGTCCGGTGGCAGCCCTCAAC
CCGTCAACATTGATATTAGGGGTAAGGGAATTTTTGCCCCTAAATTTTGA
CGGGTTGAGGGCTGCCACCGGAAGTGAATTTTTGCCACGATTGAGAGTCA
GAGATGGTAGACTATATTCCTTAGACCTTAGTATCATTTTTTAGATTTAC
CCAAAGTTACacgtaaaaaaacttttattaataACTCTTTATTTCTTGTT
TATAGAATTTTCACCGAGAATCTTGATATCCAGATACTTGCTTTCATCAG
GATGGTGAGAGCGTGCGAATCTCACTTCGGTGCCACCTCGCTGGCTGAAg
gtttgtaaaagattttagttTTTCATTATACGGTCAAAGAGAGCCTAACA
GAATTTTTaagcaaatattttttattgctaACAACCGAAAAATCCACTTT
ATTTAATATTCATTTATAACTATATTCGTTCTTCGCTCAGCCGTCAGAAA
GGATAGATGTTTATTTGGTCTTTGTTCTGTTCTAGTTTTAAACTGAAACT
GGGTCTATGACACTGGGGGATCTAGGGTACCGCATTTCTGCTTACACTCT
AATCTCAGGCAAAGGTGGAGTATAGTTCAAATTGATCAGAAAAAGCATTA
GTCACTTATCAATATTTTTACGGTATTTATTTCTCGGTAGATTTCGACGA
ATCGAAATGGCTATGGCCCGAAGCAACACGGTACGTATCTTTTGAAATTT
GTGTGGAATTTTCAACCTTGTGCTCCTACTTCGAAATGAGAAAAATGTCG
ATCTCTGAAACAAAGAGTTTTGACAGAGGATTCCATGAAATTTTTATCGT
AGATCTGATCTGAAATTCACTCTGAAATTTGGAGGAAATTcaatcataga
tttataaagcccgaagagctaaatttcgtgctttaagccatcacaggcaa
gaaaaattgaatattggaaaaaatatattgttgctattgttttcaaaaac
accgcgaagcttctgattggtcaagcgctgagaTACTATTggaatgtcac
gtgacctaggtaggatttcctacctaacctcggcacacttttcagcaaaa
gtacgccatctagcccttcgggctttataaatctatgaatCCAATGATAT
TATAGCCTGTACTACCCTCTCCCCATCGCCCACGGGCGGtttttgctttt
tgaaaaatctagatccTACGCACATCTATTTTGGCTAGATTATTTCTATG
TTTCGCCAGTACCAACTTGCTGGTACTGAATGATCGAAAAACAACTGAGC
AAGTCAGAACATCTCTCGTTGTGGAGTCTTGTGAAAAAAATAGCGCAGAC
ATGGAGTGGTGCCGTATCGTACGCGGTTCTTTCCGGCGAATAGGCAAATG
CTCTCAATTCAATCATGTTTTAATACAATAATAGGTAGCTTTCTTCTTTT
GCCCTTACAGGAAAGACGTCACGATGCGTTTGAGTGGCACGCCTGACGGA
TCGTTTTGTATAAGACAGTCGGAACGATGTAGAGGCGAATGGACATTAAC
AGTCAGGTAATGTTAGTTCCTAATAACTGTCTTAGTAATCTCTTGATAAT
ATCTTAACCTGAGGCTCACATTGTTTCTACTATGTTCTTTATGGTTTGGC
CAATTTATCATTATGCATACGATGAACCAACTGTcttttagttgaaagtg
ttcCGAGGGACTTTAGTGCGCTTAGGTTTGAAGAAAGGATTCATGCGTTT
TACCTAACCTATTTACTTGACAATCTTTCAGGAAAGAGGGTCGCGAAAGA
CTCATTCGTATCATACAACGGAACCAGAACGGCGCCCCTTGTTTCGGCTT
CCGTGAAGAACTTCTCAATTTCGGTAGCTTAGAGGACTTGGTTTTACATT
TCCGTGATAATTCGCTGGAAGATTACAACTCCAAGTTAAACATCAAGCTA
CTGCACCCGTGCGGGAAACCTGACCAATTAAATGTAAGTTTAAATCAAAA
TGTTCTGGACTAAAAGTTCAACTTTCGTTTTAAGGGTATTTGACAATACA
GTCAACtcactctaattcgaacttctcgaacctctattattcgaatcttt
ctgtaattcgaacttaaaCATTGGTCCCCTCAGGCTGGAAAATGGTTTGA
ATTactttttgtaattcgaatctttctctaattcgaaggaaatttttggt
cccatgaagatcgaattagagagagtcaactgtatcaTATTGGAAATTAT
CAattactttgattttttatgatgTAAACGATACTCCTAGTCTTTAGCAT
CTgcaatcggcgccgaaataaTTGGCAAAAAAGGGGAATACACCTTTTTA
CGGTTAGCTGattcgtataaaaagtcaccaaaatttcgagtaaacaaatC
ATCTCATTGACTAGCaaaaacttaaacaaaaaaaaatgcttAGAGTAAGA
GCACAGAAAGGACGTTTTTGTCATACTCTGCACATTTTTTTGTGCAGCCT
CTTAGACCAAATTCATGAATATAGATtacataattttgttttttctattt
cagaTAACAGAAGGTCAACAAGACATGTTAGTGGACCAGGCGAGATACGA
AGAGTTGGTGGAGAAACTCAATCACATCAAATTCATGGAACTGAAGCTCG
AAGAACAACAATTGGTTGGTaccccagttggcacacaacgtcgtttcaac
gtttatgtaacgctcacaacgtccattcaacgttagatgaacgttgaaac
aacgttgtgtgtcagctgggtaccagtccttattttgttgtttttggaaa
GGAATTAAGCTCACAGCTGACTTTCTGCCCTACCTATTCtgattgttaga
gtaggcaaaaagtgggcactaatttggcagttaaaatctttgcttgaaaa
agattgaaagaagacattgcattgacgtcaaaagagggcaatgcattgac
tttagacagccaactttcTGCCAACTTCAATTCGCagttagaataggcag
ggcgaaaagtgggccgtctaaactagagcttaggaAAACAGAACACACAT
ACCAAGGCCTGTGTGAGACAGTAGAAGTATTTGTCCGTCCAAAATTTCAA
TCTTTCTGAAAAGTTCATAGATGGCAACATTAATATGGGGTTTTTGGGGA
TTTTTTCGTTAATTCTGTGGCGGCGCGTCTCCTTCTATTTGTGAATGATT
TTGAAGTTCTCATGAAAAAAAGAGTAAATTCTAAAAGATGTCttatctta
ttttttactttttttcccaCCATATAGGCATTAGAAGAATGTAAAACGTT
AGTAGAATCGCAGACAGATGTGGTCAACTTCTTGGAGGAACAGATGGAAC
TCGCTGAAAGGATCAAGAAAGAAGCTCCCACTAGTGATAAGTCAGAGTAT
GTCTTTTAGTTGGTGTATATGTGTCACGTGTCTCTATCAAATGGATTGAG
ACCACGAAAAAACAAAGGTTTGATTTAGCCGACTGTGTTAGTAATTGGGG
AGTTTTGGTAATTCTATTAGACGAATCTTGTCTTTCTATATctcgaacta
attctcagttGCCTGCCAAGAGGAAATACTTGTAAAATACTCTCTACAAT
TaaattctctctgtaattcgaacaaaccAAACTTCCCGTTCGAGTTTGAG
AGTAAACTGACGAAAAAAACTTGTTGGTCTATTTTTCAACTAATTTTGCG
GACGTCCAGGTAGTTTAAATATAAAATAGAACactttctttgtgtttttt
tttactggCGAAAAATTTGTAATTAGAACATCTCCATTATATGATGAGGC
TATTTTGTCGTTCTAGTTTTCAACTAAGGCTGATTAATGGTTATTCATTT
CTTATAATTGTGGGCAACAATTTCCTCTTCTTTTCTGATACAAGTCATGA
CCGATTTATTTACAATCTTTAAATTCGACCCCCTacaactcaaatgtctc
cttaactcaagtTATTGTCTCTTCAGTTGATAATGCCTTGTAAACTATGA
CTAAAATTACGTTTTATGGAGATTTATGGAGACTGCATTGTATTAGCCCA
AGAAAAGGGTTAATGTATACCGagtttttaaaacgtttttcaaTATCATA
ATTTTATAGTTTGGAGAACAGTATTGTGAGCATGAAAGAATTTTTGAACA
TGGAGAAAGCGAAATGGCACGAGATGGATGATATGTTGACCAAACTGAAG
CAAGAATGCGACCAGATCAGTACACAATTGACGGAGTTGAGTGCAGGAGT
ACCTGGACTGACAGACGAGTATAACCAATTGGAAAGGTATTACAGTGTat
aaacccagctggcacacaacgttttttcaacgtttatttaacgttcacac
aacgtccaaataacgttatttgaacgttaaaacaacgttgtgtgccagct
ggaaaAAGTTCTTCCGTTTCAGAGGGATTTCCAACACAGTAAAGTATATA
AAGGGACTATTTCGtctcaaaatttggtataattcaccaaaatttaaaaa
aatgataatgCTACTTTGCTGTATAAAATCCCTTTTCCGTCTCAAACAAA
AatccttgctttgaccactgtattaattttgctttgaaagatTTCCCCAT
CACCTTGTCAAGGCCTTGTCAATTTTGTGGTCATGTTAATCGTGGTGAAC
TTTTATAGAtcgatagagtcgatattttaatATTGATAGCCACGGAAAGA
ACTTCTTATTAGGTCCACGGGGAaacggctcggctatctatgaactgaac
agaacattgggctcttccagaaaatgttcgtacatgggggggaTGGAgaa
tatattgtccgggggtagcgaaaaatcatcaaaatttgccttgttcgGGG
GTagatttgctctgtccggggtaATTTGGGTTTCCGGGGGGTAAGCTGAT
GCTTGTCCGGTGGGTAAAACCtgttgtccggggggccaaaagtcactttg
tccgggggtaaatcgCTGAAAATCTTTATATCCtacaccccccccccata
ttccaATTTTTACTGGAAAAGCCCATAGGAAGGAGACGATTACAACGAAT
TCAGTCATCTTAACGATATTCCTTCTTTGTAAACTGGAACCCAGTCTCCC
CTCTTAAAGGTGAGAAAGGTGTATTAAATTATTTGGAGCATACTCGATTT
CATTCGGACCACTCTTTTTCATTATATGgttgattgttttgttttagaTT
ATTACAGAAGAACGATCCGAACCTGTTCGCAGAGAAACATGGGGAAGACG
GACTCGAAGAAAAAGACATGCAAAAATTCGAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016018XLOC_016018Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028279-exon-sc0000672-1491911889:119574..119669TCONS_00028279-exon-sc0000672-1491911889:119574..119669Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1510915933:119574..119669TCONS_00028279-exon-sc0000672-1510915933:119574..119669Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1575043694:119574..119669TCONS_00028279-exon-sc0000672-1575043694:119574..119669Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1491911889:123029..123123TCONS_00028279-exon-sc0000672-1491911889:123029..123123Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1510915933:123029..123123TCONS_00028279-exon-sc0000672-1510915933:123029..123123Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1575043694:123029..123123TCONS_00028279-exon-sc0000672-1575043694:123029..123123Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1491911889:123464..123503TCONS_00028279-exon-sc0000672-1491911889:123464..123503Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1510915933:123464..123503TCONS_00028279-exon-sc0000672-1510915933:123464..123503Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1575043694:123464..123503TCONS_00028279-exon-sc0000672-1575043694:123464..123503Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1491911889:124234..124329TCONS_00028279-exon-sc0000672-1491911889:124234..124329Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1510915933:124234..124329TCONS_00028279-exon-sc0000672-1510915933:124234..124329Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1575043694:124234..124329TCONS_00028279-exon-sc0000672-1575043694:124234..124329Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1491911889:124555..124756TCONS_00028279-exon-sc0000672-1491911889:124555..124756Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1510915933:124555..124756TCONS_00028279-exon-sc0000672-1510915933:124555..124756Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1575043694:124555..124756TCONS_00028279-exon-sc0000672-1575043694:124555..124756Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1491911889:125327..125437TCONS_00028279-exon-sc0000672-1491911889:125327..125437Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1510915933:125327..125437TCONS_00028279-exon-sc0000672-1510915933:125327..125437Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1575043694:125327..125437TCONS_00028279-exon-sc0000672-1575043694:125327..125437Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1491911889:126051..126169TCONS_00028279-exon-sc0000672-1491911889:126051..126169Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1510915933:126051..126169TCONS_00028279-exon-sc0000672-1510915933:126051..126169Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1575043694:126051..126169TCONS_00028279-exon-sc0000672-1575043694:126051..126169Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1491911889:126883..127059TCONS_00028279-exon-sc0000672-1491911889:126883..127059Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1510915933:126883..127059TCONS_00028279-exon-sc0000672-1510915933:126883..127059Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1575043694:126883..127059TCONS_00028279-exon-sc0000672-1575043694:126883..127059Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1491911889:127971..128058TCONS_00028279-exon-sc0000672-1491911889:127971..128058Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1510915933:127971..128058TCONS_00028279-exon-sc0000672-1510915933:127971..128058Clytia hemisphaericaexon
TCONS_00028279-exon-sc0000672-1575043694:127971..128058TCONS_00028279-exon-sc0000672-1575043694:127971..128058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000672supercontigsc0000672:119574..128058 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.0276e-07	0	0	7.12691	1.48791	0.00526349	0.351158	0	0	0	0	10.2178	3.20027	0.61289	1.47358	0	0.402399	14.4069	16.4336	0	0	0.828101	0.634476	0.134261	2.67437	0	0	0	0.680713
Blast
[Close]
BLAST of TCONS_00028279 vs. Swiss-Prot (Human)
Match: P85B (Phosphatidylinositol 3-kinase regulatory subunit beta OS=Homo sapiens GN=PIK3R2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.896e-20
Identity = 58/193 (30.05%), Postives = 104/193 (53.89%), Query Frame = 2 
Query:  194 FDESKWLWPEATRKDVTMRLSGTPDGSFCIR-QSERCRGEWTLTVRKEGRERLIRIIQRNQNGAPCFGFREELLNFGSLEDLVLHFRDNSLEDYNSKLNIKLLHPCGKPDQLNITEGQQDMLVDQARYEELVEKLN--HIKF---------MXXXXXXXXXXXXXCKTLVESQTDVVNFLEEQMELAERIKKE 736
              +++W W + +R++V  +L  TPDG+F +R  S + +GE+TLT+RK G  +LI++  R+ +    +GF E L  F S+ DL+ H+R  SL  YN+KL+ +LL+P        +++ QQD +V +   E +  +L   H ++         +  +       L+  +T +E+  + +   EEQ +  E+  KE
Sbjct:  325 LQDAEWYWGDISREEVNEKLRDTPDGTFLVRDASSKIQGEYTLTLRKGGNNKLIKVFHRDGH----YGFSEPL-TFCSVVDLINHYRHESLAQYNAKLDTRLLYP--------VSKYQQDQIVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKE 504
The following BLAST results are available for this feature:
BLAST of TCONS_00028279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P85B3.896e-2030.05Phosphatidylinositol 3-kinase regulatory subunit b... [more]
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