TCONS_00028412 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028412
Unique NameTCONS_00028412
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028412 ID=TCONS_00028412|Name=TCONS_00028412|organism=Clytia hemisphaerica|type=transcript|length=757bp
ctagacaatGTAGCAAACATGgataaaaaattaatagaaaTCAAACAATG
GCTAACAATTACTCAGGGAAACAACCCCATGGCAATGTTCAATTAGCTTA
CAACCCTGGACAAGCACAACATTATGCTCAACCTTCATCATCCTCGGGTA
GACCACAAGTTGAATCAAaACCAAGACAGGCTGTAGCAGCGCCACAGCCG
CCACCACAGCAAACACATCAACACCAACACGGTGGCCATGCAAGTTATCA
GAGTAAATACGGTGAGATGTTGAATTTTATTGAAGAAATTGGAAAGGAGG
TACGACCCACGTATGCTGGAAGTAAAATGGCTCAAGAGCGCCTGAAGAAA
AATATCATGCATGCACGAGCTTTGGTTAGAGAATGTTTGGCAGAAGTGGA
AAAGAGTGCACGACAATGAGGTTGTAGTCGGTGAAGACTGGATTTGGTTT
TGTCTCTTTTTGATGGGGAATGATGGACGGGCTTcggaaatttaaagatt
tttacatCACACTCATTAACGGAAATTCTGTTATTTATATTGATATTATC
TAGGAACCACTTTAATATAATTTAGGTAAGTAtttaaaaagaatatttca
atattAAATTGATCAACTGACGTATTTTAAATATAAAGACAAAGGTTAAA
GTACAACCATCAGTGTTTCAACTTCACAAAATTGTCTTCTTATTATTTTT
CCTGTCATAAATTCTCGACTCGTGCAATTGACTTATGGATAAATTTACTT
CTTGCGT
Run BLAST on NCBI

transcript from alignment at sc0000676:174527..180561-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028412 ID=TCONS_00028412|Name=TCONS_00028412|organism=Clytia hemisphaerica|type=transcript|length=6035bp|location=Sequence derived from alignment at sc0000676:174527..180561- (Clytia hemisphaerica)
CTAGACAATGTAGCAAACATGGTAAGTATAAGCATACTGTGCTTTTATTC
GGCTAAAAAAAATTTTGCGTCGGGAAAACTTTTTCAAACTTTCAGCAATG
ATTGACTGTGACAATGAAAATTAATATCCAACACATTTTTTATCTTCTTA
CCTTCTTCATCTTCAATGAAGCACTCAAAGTTTACTGAATTTAAGCAGGA
TCCTGGACAGTTCCCTAACTGTCCTTATCTTTAATAAACCCTAGCAGCCA
GTATAAACGGAATAGATGTTTTGGCGAATGCGACAGTCTTTTAAATAACT
AATTACTCCACAGCAGTTACCTAGAGACAAGATAATTTATCATGTTTTTA
TTGGCTGAGGCCGTGAGGGAAAGTAATACATATGGAGTAATTAGTTATTC
AAAAGACTGTCGTATTTGCCAAAACATCTAAGATTATCTTGTCCTTAAGT
AACAGCTGTGTTGTAGAAGACAAATCAGTAATCTGACATTATTATATACT
TTCATGTCTACAACAGGATTTCTCTGAAGTAGTTAAAAACTAAACAAAAG
AAAAAACAACTGGAGTAAACATAATGCGGTCTCCTTATGATTAAGGAAGA
ACTATTGAGCCTAGCTAGAGTATCAGCCTTGATGTATAGCTAACTACCTT
ATTGGTATTATATTTCATGTGTATAGTCATCCGGGGTAATTACGGGACGA
AATTCACTAACCTTTCAAAATCTCAGAATATACAACAGCTCTTGCTGCCA
TATTTTGTCAAAATATTAAGAAGTTGTTTATCTTGCCTAATCCCAAATGG
TTTGGAGCTATGACCTATCATTCTCGCAAAATTTTTGTGAATAGGTGTGA
AATCTTTTGTGAATAGGTGTCAGGTAGGAACATTTGACGAGTTCCTGTGT
ACGCCGTGTAAAAAACAGTAAAAAAAATCATAACAACACTCATTTAAAAA
AAATACATACACGGCGTACAGGAACTCGTCAAATGTTCCTACCTGACACC
TATTCACAAAAGATTTTATATTGGACTGGCTGAACCCAAATTTAAGAAAC
GCTTCGCAAACCACAAGTCTTCATTCGCAAATGAGAAGTACGAAAAGGAG
ACAGAACTTTCTAAGGAAATTTGGAGGTTGAAACGTAAAAACCGACACCC
AAAGATTACTTGGAAAACAGTCTGTCGTTGTCCGCCCTTCAACCGTGCCT
CGGTAAAATGTTCACTTTGTCTCAGTGAAAAATTTGAAATTGCAACATTC
AACCAGCCCGACAAGCTGTTGAACTCCAGAAATGAACTGATTTCGAAATG
CCGCCACGTGAACAAGTTCAGGCTAAAACAACACGATTCGAAAGACTGAC
GTCAATTGTTGTCGAAAGAAGCCAGTACATTGTTCTTCGTAAGCATTCAA
AACGAACTTTAGTTTTTTTAAAATTTTATTTTCAACTGATGATCGTCTCC
ACGGCGTGAAACTATTAGTTTTGAAATAAAACTCATTAACTTCATTCGAC
AATAGTGAATAGGTGTCCCATAATCACCCCATGATTTGGGGTAAATACGG
GACACCCCTGGGTAATTATGGGACGCGTCTCGTAATTACCCCTCACTGCT
TTTGCTTGAATGGGATAAGAACGGTACATATTTTAAACTTTAAATAATGT
TCAAAATAAGTGAAATTTAAGGAAAGGCAAGACGTTTTTTGGGCAAGAAC
TAAGATTTTCAGCAACATTTTTTTCTTTTTTAAAGTACTAGAAATGCTAT
ACAACAACACAAAGAAAATGATTAATGAAAGAACAACGAAGTAAAGAATG
TATATATAATGTCTGTTGTTTTCTATTTATCCTTTTATACTAAATTTCGC
GATTGCCAGTTTCTGGAAATTTTGGCCTGTATTAAATTTCGCGATTCACT
AAATTGGGCATTTTCAAAAAGTGGGAATAAAGAAAGAAAATGACTGATTT
CGCTTGAAACACAAAGTATTGGGTGTAAACATACCAAAAATAGTAACGAA
ACTAGTGACAAAAATNATGATTTCACTTGAAACACAAAGTATTGGGTGTA
AACATACCAAAAATAGTAACGAAACTAGTGACAAAAATAGTAACAGTGTA
ACAAATAAGTGTTTTCAATTTTCGACCTATTTTGAAAATTTTTCGCAGGT
ATTTAATTTAGCGATTTTGTATTTTTGAAAAATTTATACGGTATTAAATT
TCGCGAAATTTGACCTAAAAAATTGCAAAATTTTAAGTACCCGCGAAATT
TTGAAACACGCAAAATATAATATAATACCAATAAGTTCACTTCACATATA
TAAAGCTACGTTTTATTGCAAACAAATCATGTCATTTTCACTACCCCTCA
GTACTGTGACAAAAATTTTGTAACAATCTTAAAAACTAACCTTACCTTTC
TTTATTGTATTAAATTTTTTTCCCAAATTCACTCATTCACGCAATTTTTG
TTCACGCAAAGACAGTGTAGTTTTCAGATCTTTGGTTTAGAGGCTTGAAT
ATGAAAAGAAATAAAACTGATTCAGTATCAGCCCTTACTGTATTGGCATT
ATATTTTGGCCTTTTGGTAGAAATTAGGCGCCAGCCTAAAAAAAGGCCAA
AGTAAAATAAGGCAGAATGAGGACCAGCAAAAATCAAATGATTTGATACT
TGAAAAGCACTTATGAAGTCTCAAATATTTAATAAAATAACTTTAACCCA
GTTTATCTTTAATTTTGAAGGATAAAAAATTAATAGAAATCAAACAATGG
CTAACAATTACTCAGGGAAACAACCCCATGGCAATGTTCAATTAGCTTAC
AACCCTGGACAAGCACAACATTATGCTCAACCTTCATCATCCTCGGGTAG
ACCACAAGTTGAATCAAGTAAGTAGTATGATCTCTTTGATATTTTTTTCA
ATATAATAAAGGTGAGACCAATTTAATTTGTTGTTCTACGGGCAGATCGT
TAGCAAAATATGAGTCGGTCCCAAGTAATATAAAAATAAGATTTTCATTA
ATAAAGGAAGGTAATTAGGCTTTATAAGTAATATTTTCAAAAATTCATCA
TTCATCTTTGATGGAGTTTGTAATAAAATCTTTTGTGCATAGAATTCATG
ATTCTAGATTCGTTTCAACTTTTTTTTAAGTGTAAATTTTTTAAATGACT
TATTGTTAGAAAATTGAGGCATAGGAAATTCAATATTGTTATTTTTTCGT
TTGCGGCAAATGCTAGGTCGGTCGCGCCCGTAGAACAACAAATTGAATTA
GTCTCGCCTAAACAAAACGTTTTAGTGAGTTAAACCAGAGCTTGTTTTTT
CCTCTACTGCTTTAAAAGTGCATTATGTAAGACTTAATCTCTTTTGTTGG
GGAGAATACATCCTTTTTATTTATTTTAGAATATTCTTTTTTATGTTCTT
TATACAAAAATCAATTTTTCAGAACCAAGACAGGCTGTAGCAGCGCCACA
GCCGCCACCACAGCAAACACATCAACACCAACACGGTGGCCATGCAAGTT
ATCAGAGTAAATACGGTGAGATGTTGAATTTTATTGAAGAAATTGGAAAG
GAGGTACGACCCACGTATGCTGGAAGTAAAATGGCTCAAGAGCGCCTGAA
GAAAAGTAAGTACTTTGTTTGTTATGGAAGCTTGCTTTTGTTCATTTTCA
CAGGAAAAATTGTTGCTTTTGTACTAAATTATTTCAATTTTTCACCACTA
ATTTATTTACTTTATCAGATCACCTTTTTTTACTGTCTTTATCAAAAATC
ACGATTCGGTTAGAACATCATCAAAACACTGTAATTGCCTACAAGATTTA
AATTTGGCTTAAAATCGTAAAAGGGGAGTTTTATCCCTAAAACACGAGAA
TATAAAGTATATAAATTTTAGCATTTGTTCTAAGATTATGTTATGATCTG
TACAGTTTGCAAATTTATGACCGGACCATAAAAGGCTAGTTCAGTACATT
AAAGTTACCGTTTTCTCTGATCAGACTAACAAGTTTTTCTAGTAAATAAC
AGCATTAAAAGCCAGCAACTTAAGTCACAAGTATTTTTCCTAGGGTAAAT
TAGTGTTTAGATATATGTCGAGGTTTTTTTGATAGATAAGTTCTGTACAT
GAAGTCTCCATAACTCAAATACGCATGGTAACACAAATCTGTTCCAATTC
TTAGGTATATTTCGAGTTTTAACTTAGGAAGAGACAATAAAACTTGTTCG
AGTTAATGAGATATTCGAGTTATAGAGGTTCGAGTTAAAGAGACGCTGTA
TAAAGAGAAAAGTTGAATGATCACTAAAGAGCTTGGAAGATGAAAACAAT
AAGTGTTCTCTTTAAATTTATTTATTTCTTTTTCATTTTTACTGATGATG
GTGATCGGATGACACCGAAACGTCTAAATATATATGTTTAAATTTTATTC
AAATAAAATGAAAACGTTTAGTGAAAAATCTACAATACATTGTATTCCTT
GAAGATTGCTTCAGCATGAAACAACGTCTAGCAAAATGTTGTAAATTCTT
TATTTCTCGATATTTCTCTCGAATTTTTTCGGATTTTCTTTAGCACTTTG
TGATTCTATTTATTTTACTGTTGCTTTTCAGATATCATGCATGCACGAGC
TTTGGTTAGAGAATGTTTGGCAGAAGTGGAAAAGAGTGCACGACAATGAG
GTTGTAGTCGGTGAAGACTGGGTAATGTAAAGGATATTTTTATGTCATTT
TTTTCGAAGATGTTTATTTATAAAAGTCTTTATTCATTATTACTGCACTG
GTCCACAAACTATAATACTCTTTTTAAGGTCAATTTTTATCAAGAAGTTA
TGTTCAAGACAAATTTTAGTAAAACATTCACATTCTGAAATTTCTTTAAA
TTCAACCTTAACAAATTTTTAACGAAATGGGGCACAGTTTATTAATAACG
GTGCACTGACTGTATATGACAGTTCTGTATGCCAAGTAAAATGTGAAACT
CATTGTATCAAACTCCATTTGCTTTAAGTGTTCATCTTTTTCACTTTACC
ATATGTGTTTTGTATAAGAATATCCAATATTTTTATGCCTTCGGATGTTC
TTAACTTTTTAAGTATTGAGCCTAAAATGTTCTTAACATTTTCTTATTTT
CACCATTTTGTGGGTCTTTCTGTCCATAGAAATTGGATGTTTAAGAAACT
GAAAAGCCTTAAAATGTTCTTAACTTGTTCTTAATAATTTGACCATCGAG
GCCTTATGTTCTTATATAATTTGTTCTTATAAAAAGGTATTATTCCCTTG
AGAGTTGTTTCCAGATGTCAGTGAAAAAAGTGCACACTTAAAGTAAATGG
AATTTTAGGTGCTAAACTTTTTTAGTTTTTTTTTCAAGTATTTTTTCATT
AATTTTGTACATAAAGTAGGCTTAAACAAGAAAATGCATTCATTGCATCT
TAAAAGGATTTCATAAGAGAATCAATTTCAATTGTTGTTTTTAGTCCATT
TATCAAAGTTCAACGTGAAATTCTGACTTTATCAGTCGAAAAGTTTTCTC
GAAAATATTTTTTTAATTCGTGCTAATCGCTCCTCATATTATTATCAGTT
TAAGCAACTTTTTTTGTGTTGTTTTTTATCCTCTTTTTCTAAAAATTTTC
CTCTATTCTCTTTTGTTATTGCATTTTGATGAATAATTCAAGAGAATAAC
TTTTGAAAAGTCCATCACAGGTTTAAAAAACTGCATAAAAAACCTTTGAT
ATATAGATACTCTTTTTAGATTTGGTTTTGTCTCTTTTTGATGGGGAATG
ATGGACGGGCTTCGGAAATTTAAAGATTTTTACATCACACTCATTAACGG
AAATTCTGTTATTTATATTGATATTATCTAGGAACCACTTTAATATAATT
TAGGTAAGTATTTAAAAAGAATATTTCAATATTAAATTGATCAACTGACG
TATTTTAAATATAAAGACAAAGGTTAAAGTACAACCATCAGTGTTTCAAC
TTCACAAAATTGTCTTCTTATTATTTTTCCTGTCATAAATTCTCGACTCG
TGCAATTGACTTATGGATAAATTTACTTCTTGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016095XLOC_016095Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028412-exon-sc0000676-1575043694:180541..180561TCONS_00028412-exon-sc0000676-1575043694:180541..180561Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1575043694:177695..177841TCONS_00028412-exon-sc0000676-1575043694:177695..177841Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1575043694:176957..177139TCONS_00028412-exon-sc0000676-1575043694:176957..177139Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1575043694:175891..175980TCONS_00028412-exon-sc0000676-1575043694:175891..175980Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1575043694:174527..174842TCONS_00028412-exon-sc0000676-1575043694:174527..174842Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1510915933:180541..180561TCONS_00028412-exon-sc0000676-1510915933:180541..180561Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1510915933:177695..177841TCONS_00028412-exon-sc0000676-1510915933:177695..177841Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1510915933:176957..177139TCONS_00028412-exon-sc0000676-1510915933:176957..177139Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1510915933:175891..175980TCONS_00028412-exon-sc0000676-1510915933:175891..175980Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1510915933:174527..174842TCONS_00028412-exon-sc0000676-1510915933:174527..174842Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1491911889:180541..180561TCONS_00028412-exon-sc0000676-1491911889:180541..180561Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1491911889:177695..177841TCONS_00028412-exon-sc0000676-1491911889:177695..177841Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1491911889:176957..177139TCONS_00028412-exon-sc0000676-1491911889:176957..177139Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1491911889:175891..175980TCONS_00028412-exon-sc0000676-1491911889:175891..175980Clytia hemisphaericaexon
TCONS_00028412-exon-sc0000676-1491911889:174527..174842TCONS_00028412-exon-sc0000676-1491911889:174527..174842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000676supercontigsc0000676:174527..180561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
54.3538	46.0609	28.0105	24.5318	47.4511	36.3262	30.3727	20.4868	29.0766	28.0414	13.4258	17.2644	12.5814	9.26103	11.139	12.762	21.3977	28.3204	2.76022	11.957	22.111	19.9099	25.4156	26.3458	14.0574	16.187	20.3368	16.8407	15.9069	14.5945
Blast
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BLAST of TCONS_00028412 vs. Swiss-Prot (Human)
Match: CDKA1 (Cyclin-dependent kinase 2-associated protein 1 OS=Homo sapiens GN=CDK2AP1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.788e-22
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 3 
Query:  249 QSKYGEMLNFIEEIGKEVRPTYAGSKMAQERLKKNIMHARALVRECLAEVEKSAR 413
            QSKY E+L  IEE+GKE+RPTYAGSK A ERLK+ I+HAR LVRECLAE E++AR
Sbjct:   60 QSKYAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETERNAR 114
The following BLAST results are available for this feature:
BLAST of TCONS_00028412 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDKA18.788e-2272.73Cyclin-dependent kinase 2-associated protein 1 OS=... [more]
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