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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028433 ID=TCONS_00028433|Name=TCONS_00028433|organism=Clytia hemisphaerica|type=transcript|length=2787bpRun BLAST on NCBI protein sequence of glutamate high-affinity transporter 2 >TCONS_00028433-protein ID=TCONS_00028433-protein|Name=glutamate high-affinity transporter 2|organism=Clytia hemisphaerica|type=polypeptide|length=588bp MENKLLNKDSNGLSNGNNYNNKKQSYSSDYFRNKNQNGNGDIWNWIKNFIRun BLAST on NCBI transcript from alignment at sc0000678:36319..43915- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028433 ID=TCONS_00028433|Name=TCONS_00028433|organism=Clytia hemisphaerica|type=transcript|length=7597bp|location=Sequence derived from alignment at sc0000678:36319..43915- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000678:36319..43915- >TCONS_00028433 ID=TCONS_00028433|Name=TCONS_00028433|organism=Clytia hemisphaerica|type=CDS|length=15903bp|location=Sequence derived from alignment at sc0000678:36319..43915- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028433 vs. Swiss-Prot (Human)
Match: EAA2 (Excitatory amino acid transporter 2 OS=Homo sapiens GN=SLC1A2 PE=1 SV=2) HSP 1 Score: 369.007 bits (946), Expect = 1.922e-115 Identity = 224/491 (45.62%), Postives = 317/491 (64.56%), Query Frame = 1
Query: 280 KLGQPARYNVIIIIGFPGEXXXXXXXXXXXXXXTFSLITGLAGLNGKVSRKIGARAIAYYMTTTCIAAIIGLILVSAIRPGSAMVPPKDSEPQK--DVRPLDSFMDIVRNMFPSNIVKACVQQDKTKIKFINGTLLSEDKVSFDVTRFSKAAITDMVNKKEIFESPGSSPSTPLNKRSFYKKVKNYSKPKIGDGLEQTGNANFLGLIVFAMAVGKIAGSMGKEAEMFLAFITTFNAIVTRLIVLVMWYSPIGIGSLIMARFAEMENIHETFAGLALFXXXXXXXXXXXXXXXXPAIFFFFTRTNPYVYLSRVGPAMATAFGTDSSAATLPTTFRCLEENLKIDKRITRFILPVGTTINMDGTALYEAVSAIFIAQSVGQSLSFGDYIAISFTSILASVGAAAIPHAGLVTMLIVLDTVGLPTDMIAIIFSVDWFLDRVRTMINVLGDAYGAGIVQHLSKDDLAKADL-------IEKAKLERKAEEQGNYR 1725
+L P +V+++I FPG++L+RMLKMLILPLI SLITGL+GL+ K S ++G RA+ YYM+TT IAA++G+ILV AI PG+ + + +K +V LD+F+D++RN+FP N+V+AC QQ +T K + +++ + + +A+ ++N+ +V +K I GLE N LGLI F +A G G MG +A++ + F N IV +L++++MWYSP+GI LI + ++++ L +++VTVI+G+ IHG I LP I+F TR NP+ + + + A TA GT SSA TLP TFRCLEENL IDKR+TRF+LPVG TINMDGTALYEAV+AIFIAQ G L G + +S T+ LASVGAA+IP AGLVTML++L VGLPT+ I+++ +VDW LDR+RT +NV+GD++GAGIV HLSK +L D IE K + ++ N+R
Sbjct: 65 RLASPIHPDVVMLIAFPGDILMRMLKMLILPLIISSLITGLSGLDAKASGRLGTRAMVYYMSTTIIAAVLGVILVLAIHPGNPKLKKQLGPGKKNDEVSSLDAFLDLIRNLFPENLVQACFQQIQTVTKKVLVAPPPDEEAN------ATSAVVSLLNET-------------------VTEVPEETKMVIKKGLEFKDGMNVLGLIGFFIAFGIAMGKMGDQAKLMVDFFNILNEIVMKLVIMIMWYSPLGIACLICGKIIAIKDLEVVARQLGMYMVTVIIGLIIHGGIFLPLIYFVVTRKNPFSFFAGIFQAWITALGTASSAGTLPVTFRCLEENLGIDKRVTRFVLPVGATINMDGTALYEAVAAIFIAQMNGVVLDGGQIVTVSLTATLASVGAASIPSAGLVTMLLILTAVGLPTEDISLLVAVDWLLDRMRTSVNVVGDSFGAGIVYHLSKSELDTIDSQHRVHEDIEMTKTQSIYDDMKNHR 530 The following BLAST results are available for this feature:
BLAST of TCONS_00028433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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