TCONS_00028561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028561
Unique NameTCONS_00028561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028561 ID=TCONS_00028561|Name=TCONS_00028561|organism=Clytia hemisphaerica|type=transcript|length=246bp
CGTCCAGAGGTTGTCAGTTTAATGTCGGTAccttcaaaagtttcacgggc
CTTCTCAAGCTTGCTTTCTTTGACGACGAGCCACGATTTCGAAGGCTCCG
GGTAGTAGCCATAGGATGGACCAAAAGAAACGACTTTTTCCCACCAATCT
CGGACGCGATCGAGTTTACCTGCACCACCCAAATCGTCAGCAAAGGCTAC
CTGCTGCACCGACTCGTTGTTGTTGATAGCATCCATAAGTGgtaat
Run BLAST on NCBI

transcript from alignment at sc0000691:29188..29433

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028561 ID=TCONS_00028561|Name=TCONS_00028561|organism=Clytia hemisphaerica|type=transcript|length=246bp|location=Sequence derived from alignment at sc0000691:29188..29433 (Clytia hemisphaerica)
attacCACTTATGGATGCTATCAACAACAACGAGTCGGTGCAGCAGGTAG
CCTTTGCTGACGATTTGGGTGGTGCAGGTAAACTCGATCGCGTCCGAGAT
TGGTGGGAAAAAGTCGTTTCTTTTGGTCCATCCTATGGCTACTACCCGGA
GCCTTCGAAATCGTGGCTCGTCGTCAAAGAAAGCAAGCTTGAGAAGgccc
gtgaaacttttgaaggTACCGACATTAAACTGACAACCTCTGGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016193XLOC_016193Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028561-exon-sc0000691-1491911889:29188..29433TCONS_00028561-exon-sc0000691-1491911889:29188..29433Clytia hemisphaericaexon
TCONS_00028561-exon-sc0000691-1510915933:29188..29433TCONS_00028561-exon-sc0000691-1510915933:29188..29433Clytia hemisphaericaexon
TCONS_00028561-exon-sc0000691-1575043694:29188..29433TCONS_00028561-exon-sc0000691-1575043694:29188..29433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:29188..29433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	5.64333	5.20273	2.23392	2.16011	8.53113	11.8228	9.41181	10.0998	12.376	1.10536	9.9981	11.3156	6.27726	8.85267	12.732	6.67757	5.78794	5.77762	8.84264	8.39613	5.04185	8.12141	3.24455	10.9844	3.9665	1.95457	0	1.81345	1.84916
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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