TCONS_00028558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028558
Unique NameTCONS_00028558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028558 ID=TCONS_00028558|Name=TCONS_00028558|organism=Clytia hemisphaerica|type=transcript|length=1564bp
atgAAGAAGATGAGCTACTTGATAAAGATGAATTAATTGCTCGACTCCAA
GATGAAGAACCTATCAATATGGAATTTGCCAGTTTGGATGCACGCGTACC
AACAGTTCGCGCGTACGAAGGAAGCTTGATCAATAAAAATCGATCAAGCA
ATAAATTTCCATGGACACATAAACGAGTGACATTAAAACGAAAGCCTGGT
GACCCTAACTCTGACTACATCAATGCCTCCTTTGTAAAGaaCGCTAAACG
GCAAGTTGCGTATATTAGTACCCAGGCTCCGTTAGCTAACACTGTTCAAg
atttttggaatttgatcTGGGAACGAAATGTGTCTTTGATTGTCATGGCA
ACATCTATTGTCTTCGAAGAAGAGGATAGATATTGGCCATCTGAGGAGAA
TACGGACGGACGATATTACGGGAATTACCACGTCAAAACTGGGAGCATGA
TTATTAATTCCGAATACTCAATGGTTCTTCTTCAAATTTCTGGTGGGGGT
GTATCACGTGATATTGTCATGTACCAATACACGAATTGGTCCACCACAGG
GTCTAATATTCCACACTCGATCGAATCGCTTCTTGGCTTTGTATTGGACA
TTCGAGAACAATTACAGAATTTGGAAGACTCGTTCCCAGTTTTTCACGGA
TCGACATCTTGTGATTTCGGTGCTGTCCTTTTGGCCATTCTGATTGGCTT
AGATCATTACGACGTCAAACAAAAGATCTCAATCAAAAGTCTGGTTCGAG
TATTACGTAATGATCAAGCAGGAGCAGTGGAAAACAAAGGACAATACAAA
CTTATCTATCAGGCGATTAATCATTAcgctcaaaatctcaaaatcacGGA
ATAAACTGCTTACCCTGATTCATCAAATGAATGATACGAAATTCCCGATT
CATCCAAGAATTTTTACCAtgaagaaacaattaaatatcttttttataat
gaaaagATCGTTCAACAGTTGCCTTTAGAGTTAACCAATATTTCATAATC
AAATTTATTACATTATAGCTTAATAGCGCATGGCGTTGTACTTGTAATAG
GACAGCTTATACTCACTGTCACCACAAATTCCAACAAACTCTTTACAGTA
GGCGAATTTCTCTTTACATACTATTTTGTTATAAACTTATAATATGAATA
TATTTTACCTATATTTTTATACTAAGACCAATATTTTTCTACTTGATTTA
TATAATCGATTATTTGTACTGCATTAAAATATCAAGCTCTTCTGTCTGAT
GTATACAGTTGACGATTTCTAAtttgatcttcaaggggaattggattttc
atcgaataagggagcgtatcgaatagtagagcgtctaattagagagcgtc
aactgtaatatACTGTTTGGGCCTTGCATCTAtatcccaacacgcgattt
ttttatcactttgtTGGTGTCAAGGGAAAAGtcgtggtcgtctggtacag
gcaaGCCTTGCATTTGctttacagggtgtccctaattaaagtatcgagtt
tgaacatgcgattgagtagaaagttttatgtgcgtgttcacaaaattgta
ttttaagctctccc
Run BLAST on NCBI

protein sequence of TCONS_00028558-protein

>TCONS_00028558-protein ID=TCONS_00028558-protein|Name=TCONS_00028558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
EEDELLDKDELIARLQDEEPINMEFASLDARVPTVRAYEGSLINKNRSSN
KFPWTHKRVTLKRKPGDPNSDYINASFVKNAKRQVAYISTQAPLANTVQD
FWNLIWERNVSLIVMATSIVFEEEDRYWPSEENTDGRYYGNYHVKTGSMI
INSEYSMVLLQISGGGVSRDIVMYQYTNWSTTGSNIPHSIESLLGFVLDI
REQLQNLEDSFPVFHGSTSCDFGAVLLAILIGLDHYDVKQKISIKSLVRV
LRNDQAGAVENKGQYKLIYQAINHYAQNLKITE
Run BLAST on NCBI

transcript from alignment at sc0000691:202554..208811-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028558 ID=TCONS_00028558|Name=TCONS_00028558|organism=Clytia hemisphaerica|type=transcript|length=6258bp|location=Sequence derived from alignment at sc0000691:202554..208811- (Clytia hemisphaerica)
ATGAAGAAGATGAGCTACTTGATAAAGATGAATTAATTGCTCGACTCCAA
GATGAAGAACCTATCAATATGGAATTTGCCGTAAGTTTTTGGACCTACCC
CGGTGGAGGTCCTATAAATTAACCTGTGTTCGTCCGTTCGTCCGTCCGTC
CGTCCGTCCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCG
TTCGTTCGTTCGTTCGTTCGTTCGTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTTACTTTTAGAGAGTA
TGTGTGTTTAGACATGAAATTTTGGTTGCTTAGCGTGTTTTTATAGAAAA
ACTGGCCAAATTCGATATTTTTTTATAAGCACATGATCAATTACTTAGGT
ATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTGCACA
ACGATGCATAACTTTAAACCCTCAAATGTGAGGGAGCCCGATTTTCGAAA
AAAATGTTTTTGGGCAAATTTGGGCCAAAAAACGGCTATAAAAAGGGTTT
TTTTGGACTTTGTAAAACATTGGATCATTGTTTTTTTCTGATTTTTTAGA
TGCAAGTAGGCAAAAGATGGCTCAAGCAGATTTTTGTAAAAAAAGAATTT
TTCAGCTCAAAAAACGCATCTTTATTTATTAGAATCACTATTAATAAGCA
TACATCAATGTTCTTAGCCAAATTATTCAATTTTTTAATGAGATAGATGT
TTTTTTNAAGCATACATCAATGTTCTTAGCCAAATTATTCAATTTTTTAA
TGAGATAGATGTTTTTTTGCTCACGAAGTCTTGAATATGAAAGATTATTT
CAAGAGCATGAAATTTTGGTTTCTAAACGTTTTTTTTATAAGAAACAAAC
GACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATTGTTTAAC
GGTCATCACGTAGATATCAATTATATTTGTTAAATGCATAACCAGGTAGG
TCCATAAAAGTATCACTTGTTTATTCTTAATAGCGTTCAGAGTCAATCTT
TATTGCATGGTTTCAATGAGGAAATTTTCAGAAATATTCGATCTCAAGAG
AACAAGAATTTTCTTCGAGTTATAGAAAGATTCGAATAATAGAAGTTCGA
GTTAGAGAGAGAGTTGACTGCATGTCCTTAAGTAACAAGTAATCACGATT
TTTTAATTGAAAATTAACATTGTGAAATATGAAAATTCAATTAAACTTTA
CAGTCAATGTTCATGGTTTTCTCTTATGTTGCAGAGTTTGGATGCACGCG
TACCAACAGTTCGCGCGTACGAAGGAAGCTTGATCAATAAAAATCGATCA
AGCAATAAATTTCCATGTGAGTTCACTTTAAGCCTCCTTTATGGATGTTT
TGTACCATCCACGTGTCAAAAAAACCAGTAGGGTTTCTGAAGATTAAATT
AAAATACCCTGAATTTTCATCCCCATTCAAAAACGACTTTTGCAGTGTCA
CTGGGATTGATTTTGAAATTTTAAATTTTTGAGCTAAAAACAATAGAAAA
TGAAAATCTTAAAAGACTTCCCATCCTTTTAGTAAACAAGCAATTTTCAT
TTGTGTTCAGATCTAGGTTGCTTTTAATTCTTTTCTTCTTCTTCTCTAGG
GACACATAAACGAGTGACATTAAAACGAAAGCCTGGTGACCCTAACTCTG
ACTACATCAATGCCTCCTTTGTAAAGGTCGGTATTAGTCATCGTTGGAAA
GATAGTTTAATAAAAGTTACACTCGTCCAAAGTTTGTCTAAAATGGTCAA
AAATAATCAATAATAGACGAGTTTTAGAATCTTGATATCTAAAAAGTTTT
ATCCTCCTTTCTTTCAAAAGCATTGTATCAGTTCTGCAGTATACTTTAAC
TTTATGTTATGATTTTGTTAGTATTTCAATTTTTTTTTTGTTTTCTAGAA
CGCTAAACGGCAAGTTGCGTATATTAGTACCCAGGCTCCGTTAGCTAACA
CTGTTCAAGATTTTTGGAATTTGATCTGGGAACGAAATGTGTCTTTGATT
GTCATGGCAACATCTATTGTCTTCGAAGAAGAGGTAAAAGAAATCATTGA
AGGCTCCACTGGGCTTTAGTTTCTCGATTCCGACCAAACGAACTCCTTTG
GACGGAGATTAATACAGTGATGGTAGCACTACTCAATAACGGTGTAAATG
CATCGATAGCGAATACTTGATGATACAGCGCTGGTTGACGTTAATTTCTA
ACAGAGAGAAACTTTAAAACTCTAAAACTGATTTTTCAACCTATTTTAGG
ATAGATATTGGCCATCTGAGGAGAATACGGACGGACGATATTACGGGAAT
TACCACGTCAAAACTGGGAGCATGATTATTAATTCCGAATACTCAATGGT
TCTTCTTCAAATTTCTGGTGGGGTGAGTAAAAAAGATGTTAATCCATTAA
AGATCGAACTTTCAAAACTATTTGTCTACAAATATATGAAACATAAAAAG
TGTAATTGAAAATGACTACAAATATATGTTCACCCCTCAAATAAGAAGAA
TTTTTAAGAAAATGTATTTTTGAGTTTTTTATCGAGTCGGGTTAAAATAG
GCAACGGACTAATTGCGGCAAGACCATAGAAATCGGGTGACCTCATATGA
TGCCAGTAGCACTTAATTATTATGGGTCATCTGGTTCGTAATTTTCGGAA
TTCTTGACGTAGTTATTTTACGAGGTCGTCGTAATTTTGTCCTCTGTCTT
CGTTTTGTTGTGAAATTTGTCTAGTCTGTAAACTTATGAATTTTAAGCCA
GACTAGATGCTCTGCTCTTTTCGGGAGAGATCACCTAAGGTCAAACTCCT
ACTAGGCTTCAAACTTCCAAAGTTTAAAAAGTGAGAGAACCATTTCTGTT
ACGATATCATTTCAGGGTGTATCACGTGATATTGTCATGTACCAATACAC
GAATTGGTCCACCACAGGGTCTAATATTCCACACTCGATCGAATCGCTTC
TTGGCTTTGTATTGGACATTCGAGAACAATTACAGAATTTGGAAGACTCG
TTCCCAGTTTTTCACGGATCGTAAGTAAATCTTGCTAACAGGGGGTAGTT
GGACAGCGCATCGAATCTCAAAATTGTAACAAATCTGAACAAATTTATCC
GTTTGTACGATTTGCAATCACATCCAGGGACGGATGAAGAAATTTTCCTT
GGGTAGGCTCAAATTAAAATTCAGATCATGAATACCGATTTTCCCGATTT
TCCGATTTTTTGTTTTTATCCCGATATTTTTCTCGTTTTTCCCGATTTTC
AAGGAGGCTTAGGCCTACCTAGCCTATTTCTAGGCCCGACTCTGACATCC
TCCTTTGCGTTAATTGCTCTTNCCAATGAGGCTTAGGCCTACCTAGCCTA
TTTCTAGGCCCGACTCTGACATCCTCCTTTGCGTTAATTGCTCTTGCACG
TTAATTGATTACAATATCAAAAGAAAGGTAATAACTCTCACGGCTTTGCA
ATTATTTCGAAATGAATTGTGGGATTGGAACTTGTACAAATTTCTAGTTG
AAATAATTATGACGTAGGAGACGCTATTGGACAACAATTGTAAAAAACCC
ATTGGCTTTTCAACTAAGGGAAAATCGTTAACGACACTACGTGCTACGTG
AAAATATTACTTATTATTTACATTAGATACACCCCTGTCTCACAGCTCCG
ATGGAACTTTTTACCACAGTGGGGAGGAAAGTACTATTATGAAACTGTTG
GGGATAGAAATTCTATTGTTCCAAGGTAAAAAAAATCCAGTGGAGATGGT
TTTGGAGTGCAATGATTTCAACTGAATTTTAAATAGAGATAAAGACAAAG
TCATTTTTCCAGTGGGGATGAAATTGATGGGTATATTTTCCATCGGGGCA
TATTTTATTTGTGGTGGGGTCCCACCGGGTCTAGGATACAAGGGTGTAAT
GATATTGTTCAGTCTTCCTTAACATACGCTCCTTTCTCTTAAGCTAATAG
TCAGATTTGAATGCAACACAATTTTCTTCTTAAGGACATCTTGTGATTTC
GGTGCTGTCCTTTTGGCCATTCTGATTGGCTTAGATCATTACGACGTCAA
ACAAAAGATCTCAATCAAAAGTCTGGTTCGAGTATTACGTAATGATCAAG
CAGGAGCAGTGGAAAACAAAGGACAATACAAACTTATCTATCAGGTAAGT
TTTTAACTTTGTCTAAAATAAAGTTCAAAATATATTGATTGATATGTTTT
ACCGTTTTTCAAAATTTGAAGTTCGGGCGAGAATTGCGAGTTCAGCACTT
TATTTCATTGGATATTTCGCTTTTGGAGCGATTTGTTGACTTCTAGGGTA
TATTCCCAGCCTTAGTGGATCAATTTTGAGCTTTTGAATCTTGAGATCCT
AAAGGTCCTAAGTCTCATGTTAAAACTCAGAGTTAAAATACTATGTTCCA
GAGGTAAACTAAAGCACTGTAGGGAATTCCCCTTTTTATCCCATCCGCCT
GGGGAAGGTGCAGGGGCCAAGGAAATCTGTTTTGAAGACTAGTAAGAAAA
TGAAAGTCATTTTTTACGAAGAATTCTTTTCAAAATGCTGCGAGATAGGA
AGGGTCTGATTGGTAGAATATAACGAACCTTCACTGGCTTGGCTTCTAAA
TCTTACTCAAGTGACTTTTAAAAGAAAACATCTGAACATTTGCTCGACTT
TTTCAGGCGATTAATCATTACGCTCAAAATCTCAAAATCACGGAATAAAC
TGCTTACCCTGATTCATCAAATGAATGGTAAGTGCTTATCTTGATGTTAC
TTTTATTTCGTCATGAAGTTTCCTGCTTCGACTCGACTGAAAGACAACAC
ATGCAGCACTTTCACCAGCCTGGCTGTCGAATATGTTTTTTTTTGGAACA
GTGATTATTTCAGGGATGTTTTACAGTCTGCTCCTTTATAGATCTTTAGC
TTTGAGTTTGAAGCCCCGAATGGACTAGATAGGAATCTTCAACCTTTCTC
AAGCATTAACAGTGAATAAGCTTTCAGTATTTGCCCCGCATTTAGAAATT
TCGTTTGAAAAACACACGAATAATAAGTGGTTTCCTTTGCCATCCAGGAG
TTTCGGATCTAGCCCCTCCAGGGGCTTTAAAATCAATGCTCTTTAGTATC
GTGAACAGCCAAAAGACGATAAACCCTACACTTGAAACCCGATATCGACC
TAATCCTATCAAATCCTTCTTTTACAGATACGAAATTCCCGATTCATCCA
AGAATTTTTACCATGAAGAAACAATTAAATATCTTTTTTATAATGAAAAG
ATCGTTCAACAGTTGCCTTTAGAGTTAACCAATATTTCATAATCAAATTT
ATTACATTATAGCTTAATAGCGCATGGCGTTGTACTTGTAATAGGACAGC
TTATACTCACTGTCACCACAAATTCCAACAAACTCTTTACAGTAGGCGAA
TTTCTCTTTACATACTATTTTGTTATAAACTTATAATATGAATATATTTT
ACCTATATTTTTATACTAAGACCAATATTTTTCTACTTGATTTATATAAT
CGATTATTTGTACTGCATTAAAATATCAAGCTCTTCTGTCTGATGTATAC
AGTTGACGATTTCTAATTTGATCTTCAAGGGGAATTGGATTTTCATCGAA
TAAGGGAGCGTATCGAATAGTAGAGCGTCTAATTAGAGAGCGTCAACTGT
AATATACTGTTTGGGCCTTGCATCTATATCCCAACACGCGATTTTTTTAT
CACTTTGTTGGTGTCAAGGGAAAAGTCGTGGTCGTCTGGTACAGGCAAGC
CTTGCATTTGCTTTACAGGGTGTCCCTAATTAAAGTATCGAGTTTGAACA
TGCGATTGAGTAGAAAGTTTTATGTGCGTGTTCACAAAATTGTATTTTAA
GCTCTCCC

Coding sequence (CDS) from alignment at sc0000691:202554..208811-

>TCONS_00028558 ID=TCONS_00028558|Name=TCONS_00028558|organism=Clytia hemisphaerica|type=CDS|length=6816bp|location=Sequence derived from alignment at sc0000691:202554..208811- (Clytia hemisphaerica)
GCGATTAATCATTACGCTCAAAATCTCAAAATCACGGAATAAGACATCTT
GTGATTTCGGTGCTGTCCTTTTGGCCATTCTGATTGGCTTAGATCATTAC
GACGTCAAACAAAAGATCTCAATCAAAAGTCTGGTTCGAGTATTACGTAA
TGATCAAGCAGGAGCAGTGGAAAACAAAGGACAATACAAACTTATCTATC
AGGGTGTATCACGTGATATTGTCATGTACCAATACACGAATTGGTCCACC
ACAGGGTCTAATATTCCACACTCGATCGAATCGCTTCTTGGCTTTGTATT
GGACATTCGAGAACAATTACAGAATTTGGAAGACTCGTTCCCAGTTTTTC
ACGGATCGATAGATATTGGCCATCTGAGGAGAATACGGACGGACGATATT
ACGGGAATTACCACGTCAAAACTGGGAGCATGATTATTAATTCCGAATAC
TCAATGGTTCTTCTTCAAATTTCTGGTGGGAACGCTAAACGGCAAGTTGC
GTATATTAGTACCCAGGCTCCGTTAGCTAACACTGTTCAAGATTTTTGGA
ATTTGATCTGGGAACGAAATGTGTCTTTGATTGTCATGGCAACATCTATT
GTCTTCGAAGAAGAGGGACACATAAACGAGTGACATTAAAACGAAAGCCT
GGTGACCCTAACTCTGACTACATCAATGCCTCCTTTGTAAAGAGTTTGGA
TGCACGCGTACCAACAGTTCGCGCGTACGAAGGAAGCTTGATCAATAAAA
ATCGATCAAGCAATAAATTTCCATGAAGAAGATGAGCTACTTGATAAAGA
TGAATTAATTGCTCGACTCCAAGATGAAGAACCTATCAATATGGAATTTG
CCGCGATTAATCATTACGCTCAAAATCTCAAAATCACGGAATAAGACATC
TTGTGATTTCGGTGCTGTCCTTTTGGCCATTCTGATTGGCTTAGATCATT
ACGACGTCAAACAAAAGATCTCAATCAAAAGTCTGGTTCGAGTATTACGT
AATGATCAAGCAGGAGCAGTGGAAAACAAAGGACAATACAAACTTATCTA
TCAGGGTGTATCACGTGATATTGTCATGTACCAATACACGAATTGGTCCA
CCACAGGGTCTAATATTCCACACTCGATCGAATCGCTTCTTGGCTTTGTA
TTGGACATTCGAGAACAATTACAGAATTTGGAAGACTCGTTCCCAGTTTT
TCACGGATCGATAGATATTGGCCATCTGAGGAGAATACGGACGGACGATA
TTACGGGAATTACCACGTCAAAACTGGGAGCATGATTATTAATTCCGAAT
ACTCAATGGTTCTTCTTCAAATTTCTGGTGGGAACGCTAAACGGCAAGTT
GCGTATATTAGTACCCAGGCTCCGTTAGCTAACACTGTTCAAGATTTTTG
GAATTTGATCTGGGAACGAAATGTGTCTTTGATTGTCATGGCAACATCTA
TTGTCTTCGAAGAAGAGGGACACATAAACGAGTGACATTAAAACGAAAGC
CTGGTGACCCTAACTCTGACTACATCAATGCCTCCTTTGTAAAGAGTTTG
GATGCACGCGTACCAACAGTTCGCGCGTACGAAGGAAGCTTGATCAATAA
AAATCGATCAAGCAATAAATTTCCATGAAGAAGATGAGCTACTTGATAAA
GATGAATTAATTGCTCGACTCCAAGATGAAGAACCTATCAATATGGAATT
TGCCGCGATTAATCATTACGCTCAAAATCTCAAAATCACGGAATAAGACA
TCTTGTGATTTCGGTGCTGTCCTTTTGGCCATTCTGATTGGCTTAGATCA
TTACGACGTCAAACAAAAGATCTCAATCAAAAGTCTGGTTCGAGTATTAC
GTAATGATCAAGCAGGAGCAGTGGAAAACAAAGGACAATACAAACTTATC
TATCAGGGTGTATCACGTGATATTGTCATGTACCAATACACGAATTGGTC
CACCACAGGGTCTAATATTCCACACTCGATCGAATCGCTTCTTGGCTTTG
TATTGGACATTCGAGAACAATTACAGAATTTGGAAGACTCGTTCCCAGTT
TTTCACGGATCGATAGATATTGGCCATCTGAGGAGAATACGGACGGACGA
TATTACGGGAATTACCACGTCAAAACTGGGAGCATGATTATTAATTCCGA
ATACTCAATGGTTCTTCTTCAAATTTCTGGTGGGAACGCTAAACGGCAAG
TTGCGTATATTAGTACCCAGGCTCCGTTAGCTAACACTGTTCAAGATTTT
TGGAATTTGATCTGGGAACGAAATGTGTCTTTGATTGTCATGGCAACATC
TATTGTCTTCGAAGAAGAGGGACACATAAACGAGTGACATTAAAACGAAA
GCCTGGTGACCCTAACTCTGACTACATCAATGCCTCCTTTGTAAAGAGTT
TGGATGCACGCGTACCAACAGTTCGCGCGTACGAAGGAAGCTTGATCAAT
AAAAATCGATCAAGCAATAAATTTCCATGAAGAAGATGAGCTACTTGATA
AAGATGAATTAATTGCTCGACTCCAAGATGAAGAACCTATCAATATGGAA
TTTGCCGCGATTAATCATTACGCTCAAAATCTCAAAATCACGGAATAAGA
CATCTTGTGATTTCGGTGCTGTCCTTTTGGCCATTCTGATTGGCTTAGAT
CATTACGACGTCAAACAAAAGATCTCAATCAAAAGTCTGGTTCGAGTATT
ACGTAATGATCAAGCAGGAGCAGTGGAAAACAAAGGACAATACAAACTTA
TCTATCAGGGTGTATCACGTGATATTGTCATGTACCAATACACGAATTGG
TCCACCACAGGGTCTAATATTCCACACTCGATCGAATCGCTTCTTGGCTT
TGTATTGGACATTCGAGAACAATTACAGAATTTGGAAGACTCGTTCCCAG
TTTTTCACGGATCGATAGATATTGGCCATCTGAGGAGAATACGGACGGAC
GATATTACGGGAATTACCACGTCAAAACTGGGAGCATGATTATTAATTCC
GAATACTCAATGGTTCTTCTTCAAATTTCTGGTGGGAACGCTAAACGGCA
AGTTGCGTATATTAGTACCCAGGCTCCGTTAGCTAACACTGTTCAAGATT
TTTGGAATTTGATCTGGGAACGAAATGTGTCTTTGATTGTCATGGCAACA
TCTATTGTCTTCGAAGAAGAGGGACACATAAACGAGTGACATTAAAACGA
AAGCCTGGTGACCCTAACTCTGACTACATCAATGCCTCCTTTGTAAAGAG
TTTGGATGCACGCGTACCAACAGTTCGCGCGTACGAAGGAAGCTTGATCA
ATAAAAATCGATCAAGCAATAAATTTCCATGAAGAAGATGAGCTACTTGA
TAAAGATGAATTAATTGCTCGACTCCAAGATGAAGAACCTATCAATATGG
AATTTGCCGCGATTAATCATTACGCTCAAAATCTCAAAATCACGGAATAA
GACATCTTGTGATTTCGGTGCTGTCCTTTTGGCCATTCTGATTGGCTTAG
ATCATTACGACGTCAAACAAAAGATCTCAATCAAAAGTCTGGTTCGAGTA
TTACGTAATGATCAAGCAGGAGCAGTGGAAAACAAAGGACAATACAAACT
TATCTATCAGGGTGTATCACGTGATATTGTCATGTACCAATACACGAATT
GGTCCACCACAGGGTCTAATATTCCACACTCGATCGAATCGCTTCTTGGC
TTTGTATTGGACATTCGAGAACAATTACAGAATTTGGAAGACTCGTTCCC
AGTTTTTCACGGATCGATAGATATTGGCCATCTGAGGAGAATACGGACGG
ACGATATTACGGGAATTACCACGTCAAAACTGGGAGCATGATTATTAATT
CCGAATACTCAATGGTTCTTCTTCAAATTTCTGGTGGGAACGCTAAACGG
CAAGTTGCGTATATTAGTACCCAGGCTCCGTTAGCTAACACTGTTCAAGA
TTTTTGGAATTTGATCTGGGAACGAAATGTGTCTTTGATTGTCATGGCAA
CATCTATTGTCTTCGAAGAAGAGGGACACATAAACGAGTGACATTAAAAC
GAAAGCCTGGTGACCCTAACTCTGACTACATCAATGCCTCCTTTGTAAAG
AGTTTGGATGCACGCGTACCAACAGTTCGCGCGTACGAAGGAAGCTTGAT
CAATAAAAATCGATCAAGCAATAAATTTCCATGAAGAAGATGAGCTACTT
GATAAAGATGAATTAATTGCTCGACTCCAAGATGAAGAACCTATCAATAT
GGAATTTGCCGCGATTAATCATTACGCTCAAAATCTCAAAATCACGGAAT
AAGACATCTTGTGATTTCGGTGCTGTCCTTTTGGCCATTCTGATTGGCTT
AGATCATTACGACGTCAAACAAAAGATCTCAATCAAAAGTCTGGTTCGAG
TATTACGTAATGATCAAGCAGGAGCAGTGGAAAACAAAGGACAATACAAA
CTTATCTATCAGGGTGTATCACGTGATATTGTCATGTACCAATACACGAA
TTGGTCCACCACAGGGTCTAATATTCCACACTCGATCGAATCGCTTCTTG
GCTTTGTATTGGACATTCGAGAACAATTACAGAATTTGGAAGACTCGTTC
CCAGTTTTTCACGGATCGATAGATATTGGCCATCTGAGGAGAATACGGAC
GGACGATATTACGGGAATTACCACGTCAAAACTGGGAGCATGATTATTAA
TTCCGAATACTCAATGGTTCTTCTTCAAATTTCTGGTGGGAACGCTAAAC
GGCAAGTTGCGTATATTAGTACCCAGGCTCCGTTAGCTAACACTGTTCAA
GATTTTTGGAATTTGATCTGGGAACGAAATGTGTCTTTGATTGTCATGGC
AACATCTATTGTCTTCGAAGAAGAGGGACACATAAACGAGTGACATTAAA
ACGAAAGCCTGGTGACCCTAACTCTGACTACATCAATGCCTCCTTTGTAA
AGAGTTTGGATGCACGCGTACCAACAGTTCGCGCGTACGAAGGAAGCTTG
ATCAATAAAAATCGATCAAGCAATAAATTTCCATGAAGAAGATGAGCTAC
TTGATAAAGATGAATTAATTGCTCGACTCCAAGATGAAGAACCTATCAAT
ATGGAATTTGCCGCGATTAATCATTACGCTCAAAATCTCAAAATCACGGA
ATAAGACATCTTGTGATTTCGGTGCTGTCCTTTTGGCCATTCTGATTGGC
TTAGATCATTACGACGTCAAACAAAAGATCTCAATCAAAAGTCTGGTTCG
AGTATTACGTAATGATCAAGCAGGAGCAGTGGAAAACAAAGGACAATACA
AACTTATCTATCAGGGTGTATCACGTGATATTGTCATGTACCAATACACG
AATTGGTCCACCACAGGGTCTAATATTCCACACTCGATCGAATCGCTTCT
TGGCTTTGTATTGGACATTCGAGAACAATTACAGAATTTGGAAGACTCGT
TCCCAGTTTTTCACGGATCGATAGATATTGGCCATCTGAGGAGAATACGG
ACGGACGATATTACGGGAATTACCACGTCAAAACTGGGAGCATGATTATT
AATTCCGAATACTCAATGGTTCTTCTTCAAATTTCTGGTGGGAACGCTAA
ACGGCAAGTTGCGTATATTAGTACCCAGGCTCCGTTAGCTAACACTGTTC
AAGATTTTTGGAATTTGATCTGGGAACGAAATGTGTCTTTGATTGTCATG
GCAACATCTATTGTCTTCGAAGAAGAGGGACACATAAACGAGTGACATTA
AAACGAAAGCCTGGTGACCCTAACTCTGACTACATCAATGCCTCCTTTGT
AAAGAGTTTGGATGCACGCGTACCAACAGTTCGCGCGTACGAAGGAAGCT
TGATCAATAAAAATCGATCAAGCAATAAATTTCCATGAAGAAGATGAGCT
ACTTGATAAAGATGAATTAATTGCTCGACTCCAAGATGAAGAACCTATCA
ATATGGAATTTGCCGCGATTAATCATTACGCTCAAAATCTCAAAATCACG
GAATAAGACATCTTGTGATTTCGGTGCTGTCCTTTTGGCCATTCTGATTG
GCTTAGATCATTACGACGTCAAACAAAAGATCTCAATCAAAAGTCTGGTT
CGAGTATTACGTAATGATCAAGCAGGAGCAGTGGAAAACAAAGGACAATA
CAAACTTATCTATCAGGGTGTATCACGTGATATTGTCATGTACCAATACA
CGAATTGGTCCACCACAGGGTCTAATATTCCACACTCGATCGAATCGCTT
CTTGGCTTTGTATTGGACATTCGAGAACAATTACAGAATTTGGAAGACTC
GTTCCCAGTTTTTCACGGATCGATAGATATTGGCCATCTGAGGAGAATAC
GGACGGACGATATTACGGGAATTACCACGTCAAAACTGGGAGCATGATTA
TTAATTCCGAATACTCAATGGTTCTTCTTCAAATTTCTGGTGGGAACGCT
AAACGGCAAGTTGCGTATATTAGTACCCAGGCTCCGTTAGCTAACACTGT
TCAAGATTTTTGGAATTTGATCTGGGAACGAAATGTGTCTTTGATTGTCA
TGGCAACATCTATTGTCTTCGAAGAAGAGGGACACATAAACGAGTGACAT
TAAAACGAAAGCCTGGTGACCCTAACTCTGACTACATCAATGCCTCCTTT
GTAAAGAGTTTGGATGCACGCGTACCAACAGTTCGCGCGTACGAAGGAAG
CTTGATCAATAAAAATCGATCAAGCAATAAATTTCCATGAAGAAGATGAG
CTACTTGATAAAGATGAATTAATTGCTCGACTCCAAGATGAAGAACCTAT
CAATATGGAATTTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016191XLOC_016191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028558-exon-sc0000691-1575043694:208732..208811TCONS_00028558-exon-sc0000691-1575043694:208732..208811Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1575043694:207096..207177TCONS_00028558-exon-sc0000691-1575043694:207096..207177Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1575043694:206736..206812TCONS_00028558-exon-sc0000691-1575043694:206736..206812Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1575043694:206379..206513TCONS_00028558-exon-sc0000691-1575043694:206379..206513Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1575043694:206040..206162TCONS_00028558-exon-sc0000691-1575043694:206040..206162Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1575043694:205392..205546TCONS_00028558-exon-sc0000691-1575043694:205392..205546Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1575043694:204268..204427TCONS_00028558-exon-sc0000691-1575043694:204268..204427Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1575043694:203685..203755TCONS_00028558-exon-sc0000691-1575043694:203685..203755Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1575043694:202554..203234TCONS_00028558-exon-sc0000691-1575043694:202554..203234Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1510915933:208732..208811TCONS_00028558-exon-sc0000691-1510915933:208732..208811Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1510915933:207096..207177TCONS_00028558-exon-sc0000691-1510915933:207096..207177Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1510915933:206736..206812TCONS_00028558-exon-sc0000691-1510915933:206736..206812Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1510915933:206379..206513TCONS_00028558-exon-sc0000691-1510915933:206379..206513Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1510915933:206040..206162TCONS_00028558-exon-sc0000691-1510915933:206040..206162Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1510915933:205392..205546TCONS_00028558-exon-sc0000691-1510915933:205392..205546Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1510915933:204268..204427TCONS_00028558-exon-sc0000691-1510915933:204268..204427Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1510915933:203685..203755TCONS_00028558-exon-sc0000691-1510915933:203685..203755Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1510915933:202554..203234TCONS_00028558-exon-sc0000691-1510915933:202554..203234Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1491911889:208732..208811TCONS_00028558-exon-sc0000691-1491911889:208732..208811Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1491911889:207096..207177TCONS_00028558-exon-sc0000691-1491911889:207096..207177Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1491911889:206736..206812TCONS_00028558-exon-sc0000691-1491911889:206736..206812Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1491911889:206379..206513TCONS_00028558-exon-sc0000691-1491911889:206379..206513Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1491911889:206040..206162TCONS_00028558-exon-sc0000691-1491911889:206040..206162Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1491911889:205392..205546TCONS_00028558-exon-sc0000691-1491911889:205392..205546Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1491911889:204268..204427TCONS_00028558-exon-sc0000691-1491911889:204268..204427Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1491911889:203685..203755TCONS_00028558-exon-sc0000691-1491911889:203685..203755Clytia hemisphaericaexon
TCONS_00028558-exon-sc0000691-1491911889:202554..203234TCONS_00028558-exon-sc0000691-1491911889:202554..203234Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028558-proteinTCONS_00028558-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000691supercontigsc0000691:202554..208811 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.2742	28.3986	10.3013	6.97845	42.6346	28.8846	12.5868	11.1892	5.55234	6.75899	6.31053	5.5693	8.29969	8.73004	6.53673	8.24024	16.7615	25.595	7.63299	6.87785	37.5213	35.2653	23.1828	24.4763	15.8538	11.2514	4.03735	3.56981	6.1832	6.40777
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000242PTPase_domain
IPR003595Tyr_Pase_cat
IPR029021Prot-tyrosine_phosphatase-like
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0004725protein tyrosine phosphatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0004725 protein tyrosine phosphatase activity
Blast
[Close]
BLAST of TCONS_00028558 vs. Swiss-Prot (Human)
Match: PTN22 (Tyrosine-protein phosphatase non-receptor type 22 OS=Homo sapiens GN=PTPN22 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.117e-30
Identity = 80/251 (31.87%), Postives = 128/251 (51.00%), Query Frame = 3 
Query:   87 DARVPTVRAYEGSLINKNRSSNKFPWTHKRVTLKRKPGDPNSDYINASFVKNAKRQVAYISTQAPLANTVQDFWNLIWERNVSLIVMAT---SIVFEEEDRYWPSEENTDGRYYGNYHVKTGSMIINSEYSMVLLQISGGGVSRDIVMYQYTNWSTTGSNIPHSIESLLGFVLDIREQLQNLEDSFPV-FHGSTSCDFGAVLLAI---LIGLDHYDVKQKISIKSLVRVLRNDQAGAVENKGQYKLIYQAI 818
            D   PT  A +   I KNR  +  P+ + RV L     D +S YINA+F+K      AYI+TQ PL+ T+ DFW +IWE +V +IVMA     +  ++ +RYW +E       +G + V   +    S+Y +  L++     +R I  + Y NW     ++P SI+ +L  + D+R      +DS P+  H S  C    V+ AI    + L    + +  S+ SL+R +R  +   V+ + QY+L+Y A+
Sbjct:   41 DKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYW-AEPGEMQLEFGPFSVSCEAEKRKSDYIIRTLKVKFNSETRTIYQFHYKNW--PDHDVPSSIDPILELIWDVR--CYQEDDSVPICIHCSAGCGRTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAV 286
The following BLAST results are available for this feature:
BLAST of TCONS_00028558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTN223.117e-3031.87Tyrosine-protein phosphatase non-receptor type 22 ... [more]
back to top