TCONS_00071333-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071333-protein
Unique NameTCONS_00071333-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071333-protein ID=TCONS_00071333-protein|Name=TCONS_00071333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=707bp
MNVSNRHENPEEMEEEDDTFQTDPVEVLKLSAKTLEGSAFGARLPSDQMT
AHEASCFQDISQGSTANQKKFLYIRNRIIQCWLSNPREELIVEHALAKIE
PPFHDDPILTKRIHAFLDRYGSINIGVYKFHRSPPVLKNAPKILVIGAGM
SGLTASRQLKSFGFEVVTLEARERVGGRVATFRQGPFIADLGAMVVTGLG
GNPVTVISNQVDVKLTKIRQRCPLYECNGQMVRKDKDELVEREFNRLLES
TSYLSHVLGFNALFQKPLSLGNAIELVIKLMEKQVKEKQCEHSQKILEFQ
NRLKEVQFEMIKLRDQIEKANIEWKHAIQQKPPRDVTDEFTVRSKQRDLL
QLFKEHDGYAEKQKELETKIKDYEENPPSDVYLSLRDRQILDWHLANLEF
ANATPLSALSLKHWDQDDDFEFTGSHMTVSNGFSCIPAALAEGLDIRLNT
AVRNVKYTRQGVEVVGVTNKNGIPTSQTFKADAVLCTLPLGVLKHKNPPS
IHFNPPLPDWKTGAMDRMGFGNLNKVILCFDRVFWNSSTNLFGHVASTTS
NRGELFLFWSIYKAPVLLALVAGEAANKLETYSDDVIIGRALTVLKGIFG
SNNVPQPKETIVTRWKSDEWSRGSYSFVAAGSSGNDYDIMAAPVVPPPPP
EKPVIPGSNIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGLP
YDLNKFT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044329XLOC_044329Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071333TCONS_00071333Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023753FAD/NAD-binding_dom
IPR007526SWIRM
IPR002937Amino_oxidase
IPR017366Hist_Lys-spec_deMease
IPR011991WHTH_DNA-bd_dom
IPR009057Homeobox-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006355regulation of transcription, DNA-templated
GO:0034720histone H3-K4 demethylation
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0005515protein binding
GO:0050660flavin adenine dinucleotide binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034720 histone H3-K4 demethylation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 356..376
NoneNo IPR availableCOILSCoilCoilcoord: 296..323
NoneNo IPR availableGENE3D3.90.660.10coord: 414..633
e-value: 5.7E-56
score: 188.6
NoneNo IPR availableGENE3D3.40.50.720coord: 133..273
e-value: 2.8E-7
score: 30.0
NoneNo IPR availableGENE3D1.10.287.80coord: 274..383
e-value: 1.9E-34
score: 118.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableSUPERFAMILY54373FAD-linked reductases, C-terminal domaincoord: 519..627
IPR023753FAD/NAD(P)-binding domainGENE3D3.50.50.60coord: 642..698
e-value: 0.087
score: 11.9
IPR023753FAD/NAD(P)-binding domainSUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 139..534
coord: 656..696
IPR007526SWIRM domainPFAMPF04433SWIRMcoord: 47..124
e-value: 7.5E-15
score: 55.0
IPR007526SWIRM domainPROSITEPS50934SWIRMcoord: 35..134
score: 14.929
IPR002937Amine oxidasePFAMPF01593Amino_oxidasecoord: 150..692
e-value: 4.9E-116
score: 388.6
IPR017366Histone lysine-specific demethylasePIRSFPIRSF038051Lys-Histone-de-mtasecoord: 2..706
e-value: 1.2E-296
score: 983.3
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 37..132
e-value: 9.1E-20
score: 69.6
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 35..138

Blast
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BLAST of TCONS_00071333-protein vs. Swiss-Prot (Human)
Match: KDM1A (Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A PE=1 SV=2)

HSP 1 Score: 919.072 bits (2374), Expect = 0.000e+0
Identity = 436/675 (64.59%), Postives = 543/675 (80.44%), Query Frame = 0 
Query:   35 LEGSAFGARLPSDQMTAHEASCFQDISQGSTANQKKFLYIRNRIIQCWLSNPREELIVEHALAKIEPPFHDDPILTKRIHAFLDRYGSINIGVYKFHRSPPVLKNAPKILVIGAGMSGLTASRQLKSFGFEVVTLEARERVGGRVATFRQGPFIADLGAMVVTGLGGNPVTVISNQVDVKLTKIRQRCPLYECNGQMVRKDKDELVEREFNRLLESTSYLSHVLGFNALFQKPLSLGNAIELVIKLMEKQVKEKQCEHSQKILEFQNRLKEVQFEMIKLRDQIEKANIEWKHAIQQKPPRDVTDEFTVRSKQRDLLQLFKEHDGYAEKQKELETKIKDYEENPPSDVYLSLRDRQILDWHLANLEFANATPLSALSLKHWDQDDDFEFTGSHMTVSNGFSCIPAALAEGLDIRLNTAVRNVKYTRQGVEVVGVTNKNGIPTSQTF--KADAVLCTLPLGVLKHKNPPSIHFNPPLPDWKTGAMDRMGFGNLNKVILCFDRVFWNSSTNLFGHVASTTSNRGELFLFWSIYKAPVLLALVAGEAANKLETYSDDVIIGRALTVLKGIFGSNNVPQPKETIVTRWKSDEWSRGSYSFVAAGSSGNDYDIMAAPVVPPPPPEKPVIPGS--NIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGLPYDLNK 705
            +EG+AF +RLP D+MT+ EA+CF DI  G    QK FL+IRNR +Q WL NP+ +L  E  L ++E P++ D +L  R+H++L+R+G IN G+YK  +  P  K   K+++IG+G+SGL A+RQL+SFG +V  LEAR+RVGGRVATFR+G ++ADLGAMVVTGLGGNP+ V+S QV+++L KI+Q+CPLYE NGQ V K+KDE+VE+EFNRLLE+TSYLSH L FN L  KP+SLG A+E+VI+L EK VK++Q EH +KI++ Q  LKE+  +M+ L+++I++ + ++K A + KPPRD+T EF V+SK RDL  L KE+D  AE Q +LE K+++ E NPPSDVYLS RDRQILDWH ANLEFANATPLS LSLKHWDQDDDFEFTGSH+TV NG+SC+P ALAEGLDI+LNTAVR V+YT  G EV+ V  ++   TSQTF  K DAVLCTLPLGVLK + PP++ F PPLP+WKT A+ RMGFGNLNKV+LCFDRVFW+ S NLFGHV STT++RGELFLFW++YKAP+LLALVAGEAA  +E  SDDVI+GR L +LKGIFGS+ VPQPKET+V+RW++D W+RGSYS+VAAGSSGNDYD+MA P+ P      P IPG+   IPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLG  Y L +
Sbjct:  174 VEGAAFQSRLPHDRMTSQEAACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKKTG-KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRS---TSQTFIYKCDAVLCTLPLGVLKQQ-PPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITP-----GPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMYTLPR 838
The following BLAST results are available for this feature:
BLAST of TCONS_00071333-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KDM1A0.000e+064.59Lysine-specific histone demethylase 1A OS=Homo sap... [more]
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