TCONS_00028712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028712
Unique NameTCONS_00028712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028712 ID=TCONS_00028712|Name=TCONS_00028712|organism=Clytia hemisphaerica|type=transcript|length=539bp
TACATGGAATCTTGGCAAACAGCAAACCAAACCAAAATCCGTTAATTTCA
AAACACGAAGCACACATGTTTATAAAATCGCGGCAAAGAAGAAACACCCT
AAGTATAGTCCACGAATGTTGCGAAGAAAAGTCATGCGATTACCACGAGC
GTGACGAATCTGCTGACAGTTCAAGCTGGGGTGATGTAATAGACGCGTTG
TGTGACGCGACGGAGAAGGATCCTTCTCGATGCACGTGCAAACATCGCGG
ACGGTATCATTATTGTGGATCGCTTTACCATCGCCGTTGTCGTAGAAGAG
CTTGTCGATGTACCGGAACACTGTCCAAAGATCTTTGGAGTGTTATCAAA
GTTGATTATGATACTGCTAAAGGTACTGTCGTACGAACACAAACAAAACA
TGTTCCGACTATCACCATCAATAACTGTGACTCTGAGATTCCCTCGGAGC
CAACAACCCGGTCGATTAAAGAAAGCGTCACTTTTACGGAATCATTCTCA
CAACGTAGTTCAGTATCTTTAGAGAGTGGTGTCAAATAC
Run BLAST on NCBI

protein sequence of TCONS_00028712-protein

>TCONS_00028712-protein ID=TCONS_00028712-protein|Name=TCONS_00028712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
HGILANSKPNQNPLISKHEAHMFIKSRQRRNTLSIVHECCEEKSCDYHER
DESADSSSWGDVIDALCDATEKDPSRCTCKHRGRYHYCGSLYHRRCRRRA
CRCTGTLSKDLWSVIKVDYDTAKGTVVRTQTKHVPTITINNCDSEIPSEP
TTRSIKESVTFTESFSQRSSVSLESGVKY
Run BLAST on NCBI

transcript from alignment at sc0000698:78858..79396

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028712 ID=TCONS_00028712|Name=TCONS_00028712|organism=Clytia hemisphaerica|type=transcript|length=539bp|location=Sequence derived from alignment at sc0000698:78858..79396 (Clytia hemisphaerica)
GTATTTGACACCACTCTCTAAAGATACTGAACTACGTTGTGAGAATGATT
CCGTAAAAGTGACGCTTTCTTTAATCGACCGGGTTGTTGGCTCCGAGGGA
ATCTCAGAGTCACAGTTATTGATGGTGATAGTCGGAACATGTTTTGTTTG
TGTTCGTACGACAGTACCTTTAGCAGTATCATAATCAACTTTGATAACAC
TCCAAAGATCTTTGGACAGTGTTCCGGTACATCGACAAGCTCTTCTACGA
CAACGGCGATGGTAAAGCGATCCACAATAATGATACCGTCCGCGATGTTT
GCACGTGCATCGAGAAGGATCCTTCTCCGTCGCGTCACACAACGCGTCTA
TTACATCACCCCAGCTTGAACTGTCAGCAGATTCGTCACGCTCGTGGTAA
TCGCATGACTTTTCTTCGCAACATTCGTGGACTATACTTAGGGTGTTTCT
TCTTTGCCGCGATTTTATAAACATGTGTGCTTCGTGTTTTGAAATTAACG
GATTTTGGTTTGGTTTGCTGTTTGCCAAGATTCCATGTA

Coding sequence (CDS) from alignment at sc0000698:78858..79396

>TCONS_00028712 ID=TCONS_00028712|Name=TCONS_00028712|organism=Clytia hemisphaerica|type=CDS|length=537bp|location=Sequence derived from alignment at sc0000698:78858..79396 (Clytia hemisphaerica)
GTATTTGACACCACTCTCTAAAGATACTGAACTACGTTGTGAGAATGATT
CCGTAAAAGTGACGCTTTCTTTAATCGACCGGGTTGTTGGCTCCGAGGGA
ATCTCAGAGTCACAGTTATTGATGGTGATAGTCGGAACATGTTTTGTTTG
TGTTCGTACGACAGTACCTTTAGCAGTATCATAATCAACTTTGATAACAC
TCCAAAGATCTTTGGACAGTGTTCCGGTACATCGACAAGCTCTTCTACGA
CAACGGCGATGGTAAAGCGATCCACAATAATGATACCGTCCGCGATGTTT
GCACGTGCATCGAGAAGGATCCTTCTCCGTCGCGTCACACAACGCGTCTA
TTACATCACCCCAGCTTGAACTGTCAGCAGATTCGTCACGCTCGTGGTAA
TCGCATGACTTTTCTTCGCAACATTCGTGGACTATACTTAGGGTGTTTCT
TCTTTGCCGCGATTTTATAAACATGTGTGCTTCGTGTTTTGAAATTAACG
GATTTTGGTTTGGTTTGCTGTTTGCCAAGATTCCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016288XLOC_016288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028712-exon-sc0000698-1491911889:78858..79396TCONS_00028712-exon-sc0000698-1491911889:78858..79396Clytia hemisphaericaexon
TCONS_00028712-exon-sc0000698-1510915933:78858..79396TCONS_00028712-exon-sc0000698-1510915933:78858..79396Clytia hemisphaericaexon
TCONS_00028712-exon-sc0000698-1575043694:78858..79396TCONS_00028712-exon-sc0000698-1575043694:78858..79396Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028712-proteinTCONS_00028712-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000698supercontigsc0000698:78858..79396 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.524188	0.486906	1.54817	1.01487	0.916527	0.276438	0.646994	0.452976	2.46877	0.326761	0.715999	2.28801	7.27688	0.366281	0.0655125	0.0807061	0.0827211	20.5711	56.3267	0.103945	0.304205	0.493068	0.89654	0	0.515079	0.147415	0.471977	0	0.121574
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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