TCONS_00028727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028727
Unique NameTCONS_00028727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3005

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028727 ID=TCONS_00028727|Name=TCONS_00028727|organism=Clytia hemisphaerica|type=transcript|length=3005bp
TCGGAagtgaaacataaaaaacaatCGGTTTAATTATGCGTTTAATTCTC
ATTGTTAGAATTTATTCGTTGTTGAATAGAGTTTCTTTTGTTATTGATTT
CTCAATAACGTCTCTCTATTTACGACCACTTGTGTTATTCAAAGCAAACG
GGCAAAATATAAGAGAAGTTTATGgttcaatgaatttcagatcaaaacca
TAAACCAATGAGAGCACGCACTCTTAACGAGAAAAACACTCGTGAATATT
CGTTTTCAAGCATTTctttgaaatcaaaaagaacAGACGACGATTTGAAC
GagtattagttttttttctcgaCAACACTTGATGATATAAACAGTAGAAT
CGAGAAGTGTTTATAACAAGAAGAGACAGAATACAGAAGGGACTAGCTTG
AACTACTATTGTTGAATAATAATTGAACCAAAGTACCGCCATCATAACGC
GTTTACACAGCTTCCGAATTCACAGAGACTACCTAAGGATGGGCTCGCGT
ATCAGTTCAGCCAAAAGGACCACTGAAACCCTTAATAACGGTAAAGAAAC
CAAAATAAAGCGACGAGGATTAAAACACGGTTGTGGCAAAAGAGACACTT
TAAATCAAAACGAGAATTGTTTTCCCAGACCACGCAAACTGGAAATATTA
TTGGATAGGCCACCGGCCAGCCGAAAGGTACAGGAATATCATGGGTGGAA
TACAGATGACCGTAGCATGAATATTTACGTTAAAGAAGACGATTGTAGAA
TTTCTCATAGACACCCTGTAGCACAAAGTACAGATGCTATAAGGGGGAAA
GTTGGATTTTCTAAAGGACTTCATGTATGGGACTATACTTGGTCAACTCG
TCAACGAGGCACACACGCCGTAGTAGGAATCGCAACGAAAAAAGCTAATT
TACATTGTGCTGGATATCATTGTCTGGTCGGTGCAAATCAAGAAAGTTGG
GGATGGGACTTGGGACGTAATAAATTATTTCATAACGAAAAAGTAGTTTC
TTCACAGACTTATCCAAAAAATTTAGGCTCAGATGCGAATTTTATAGTTC
CAGATACCATTCGTTGTATATTGGATATGGATAGAGGAGAATTAAGTTTC
GAAGTAGATGGACAATATTTAGGAGTAGCATTTACTGGTCTACAAGGACA
AACTGTTTACCCGATAGTATCGGCAGTATGGGGACATTGTGAAGTCAAAA
TGAACTACATTGGTGGCTTAGAACCGGAACCTTTACCTCTGATGGATTTA
TGCCGATTGACCATTCGTCAACAAGTTGGTAAAGAAAATCTCACTCAAGA
CACTTTAGATTCTTTTAATATCCCAAGGCAGATGAAACAATACTTAGTCT
ACAAATGGTAAAGCATAATGACGAGTTGCAGAGGATAGAGTAAGCTCCAA
GGGGAAAAGACTGAATTCTCATCTCACAATTCTCTGGTGTTCTCTTGGCA
AAGAAGGAGATTTAGGAATGTCGAAGGAATGATTGGTCAAAGGATTGAGG
ATggagaacaaaaacaaaagaatgatcCAATCATTTCCTTGTATCATCGT
TCATCATCAGAGTCCTTCTCTTATTCAAAAGGCAGGAAAGTTTAATTGGA
AATCATCAAAAAACCGACGGATTGCGGTATACGTCCATCAACTTAATTGG
CATGTTCCACTTACCCTTATTATTACGAAGAAGGCgataaaaaattatat
attgttATAATGACAATCTGGTTGAATGGAGAAGACAATACAAGCTTTTG
TTTTGTGAACAGATGTTGGTTGTTATTATTGTGTTAAAAAGCACATAGAT
GAAAAGATTAAAGCAATGGAAATTGTATTGCTATTGGATATTCGCCGGTC
GTTGGTTATACCATTAAACGAGGCGATTTCGGAAATAGTTAACCGATTCT
CGTTTCGTCTAATTTGAGGTTCCTGTAGTTAAGATGCCcacagaatgaaa
aaaaaattacctcttACTAAAGCTTAAATGACTCAATTTGtgttgatgtt
gttttttaaatttgattctttttttaatacaaTTATTTTAACGGCTTTTG
TTTCTCTTACTGCTCAAAGTATACATGATTAAAGTTAAGCTGCTCTGTTT
TTATCTTTCTTGTGATTgaagggaaaaaatattttactgaatcaatttta
acagatttttcagtctaaaaatggaaatttcaaGCCGTTTAGATTAAAAA
TTTTaggttaaagaatttttttaaatcattttagaAACATAACTGGTCAT
TAGAGAGGGCCAGTTTTCTTGTACACATTCTTTATATTGACAAAACACCA
CGACCCTATCCATTTtcaaattggaaaaaactttttcttataatttagag
gaaaaatttgaaataatttatacTTTGTATTATAgatttatgataattta
tgcGGAGAACTGTATCAAAAAAGTTCATCTATATTTATTACATAcctatt
ttgttgtttttagtttagcattattattataattaagtgtttattattat
tttttaaaagaaagaattttatcagttttagagagattttttgaaaacaa
atcaacagtttttacaaattattatgaaaagtaaattttactttCTCTTC
ATAACTACCATATACGTTTCCCCTATTAAAcacctttgttttctccttaa
TTTTCCCTTTTCCCTTGTTATGGAGATTATTAAAATAGCTCCTTTTTCAC
ATTCCGCCTTAAAATAATCTATATTTTGACATGTTTTGCTTTACCCTTTA
CCTTTATCCATCCCTCAACTCCCCTGACGAAaacatttaatttatttttt
tattttttgacattttatttttcaatttgatttttttgcaatGCAAAATT
TATCCGCCTTATGTAAAATTCTTTTCTCAGAGATATATTTTATCGCCATT
TGCGATTACATTAAACTCGTTGATTTTTGTGATTGGATATTGTTGGTCTC
acctttgatttgatattttaattGAGTCTTTTTATCCTAGAGATCAGGAT
GCCag
Run BLAST on NCBI

protein sequence of SPRY domain-containing SOCS box protein

>TCONS_00028727-protein ID=TCONS_00028727-protein|Name=SPRY domain-containing SOCS box protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MGSRISSAKRTTETLNNGKETKIKRRGLKHGCGKRDTLNQNENCFPRPRK
LEILLDRPPASRKVQEYHGWNTDDRSMNIYVKEDDCRISHRHPVAQSTDA
IRGKVGFSKGLHVWDYTWSTRQRGTHAVVGIATKKANLHCAGYHCLVGAN
QESWGWDLGRNKLFHNEKVVSSQTYPKNLGSDANFIVPDTIRCILDMDRG
ELSFEVDGQYLGVAFTGLQGQTVYPIVSAVWGHCEVKMNYIGGLEPEPLP
LMDLCRLTIRQQVGKENLTQDTLDSFNIPRQMKQYLVYKW
Run BLAST on NCBI

transcript from alignment at sc0000700:118748..125021-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028727 ID=TCONS_00028727|Name=TCONS_00028727|organism=Clytia hemisphaerica|type=transcript|length=6274bp|location=Sequence derived from alignment at sc0000700:118748..125021- (Clytia hemisphaerica)
TCGGAAGTGAAACATAAAAAACAATCGGTTTAATTATGCGTTTAATTCTC
ATTGTTAGAATTTATTCGTTGTTGAATAGAGTTTCTTTTGTTATTGATTT
CTCAATAACGTCTCTCTATTTACGACCACTTGTGTTATTCAAAGCAAACG
GGCAAAATATAAGAGAAGTTTATGGTTCAATGAATTTCAGATCAAAACCA
TAAACCAATGAGAGCACGCACTCTTAACGAGAAAAACACTCGTGAATATT
CGTTTTCAAGCATTTCTTTGAAATCAAAAAGAACAGACGACGATTTGAAC
GAGTATTAGTTTTTTTTCTCGACAACACTTGATGATATAAACAGTAGAAT
CGAGAAGTGTTTATAACAAGAAGAGACAGAATACAGAAGGGACTAGCTTG
AACTACTGTGAGATTTTCTTTGAAGAAGACTTTTGTTGTGTTGTATCACT
TACTGGCTTTCGTTGAGTGCATTTATATTGCCCATTTGGTTTATTGGTGA
AAAAAGCCACGAAGAAATTCATTTGTTTCCATCAAAAAAGAAGAAGAATT
ATTTTCTCGATGTGTAAATTTTGAGAAATAATTTTGTTTTTACTGGATTT
TTAGATTGTTGAATAATAATTGAACCAAAGTACCGCCATCATAACGCGTT
TACACAGCTTCCGAATTCACAGAGACTACCTAAGGATGGGCTCGCGTATC
AGTTCAGCCAAAAGGACCACTGAAACCCTTAATAACGGTAAAGAAACCAA
AATAAAGCGACGAGGATTAAAACACGGTTGTGGCAAAAGAGACACTTTAA
ATCAAAACGAGAATTGTTTTCCCAGACCACGCAAACTGGAAATATTATTG
GATAGGCCACCGGCCAGCCGAAAGGTACAGGAATATCATGGGTGGAATAC
AGATGACCGTAGCATGAATATTTACGTTAAAGAAGACGATTGTAGAATTT
CTCATAGACACCCTGTAGCACAAAGTACAGATGCTATAAGGGGGAAAGTT
GGATTTTCTAAAGGACTTCATGTATGGGACTATACTTGGTCAACTCGTCA
ACGAGGCACACACGCCGTAGTAGGAATCGCAACGAAAAAAGCTAATTTAC
ATTGTGCTGGATATCATTGTCTGGTCGGTGCAAATCAAGAAAGTTGGGGA
TGGGACTTGGGACGTAATAAATTATTTCATAACGAAAAAGTAGTTTCTTC
ACAGACTTATCCAAAAAATTTAGGCTCAGATGCGAATTTTATAGTTCCAG
ATACCATTCGTTGTATATTGGATATGGATAGAGGAGAATTAAGTTTCGAA
GTAGATGGACAATATTTAGGAGTAGCATTTACTGGTCTACAAGGACAAAC
TGTTTACCCGATAGTATCGGCAGTATGGGGACATTGTGAAGTCAAAATGA
ACTACATTGGTGGCTTAGAACGTAAGTTTTGTTTTGTTTCTTGTCACGTA
TTTTTTCTTCTCAGTTTTTATCCCCCCAAAAAATACCATGTCTAATTTTC
CATCTTCTCTTTCTCAGTTTCTTTTCTTCTTCTTCTTCATCTTATATATC
TATCTTTTCTCCTTTATTTCACCTAAGATTTTTCTCCCTTTGTGTTGTGT
TTGATAAACTTCGTATGAAAGAGAGAGCTGCTTGCACGAGAGAAAGTAGA
AAGAATTTTTTCTTTTTTCAGTCAATCAGAGTCCCAGTGTTTGAATTCAA
GCGTGTCTTATTTTCTTTTCAAAGTTAACACTCAACTGCAAAACTCTGTG
TATTTTCCTTTTCTCTGTGTTATTATTGAACTTTTCGCAGTGACAAAGTG
ACATTTTTTCTGCCAATATTTGTTTTCTTTGAAAAAGGGTCTCACTCATA
GAGTCTCAAACAGTAGGCAACCTCGAATTTCTTTGTCAAGAAATCTCATG
CCTCAAGGCTTTTCATATGTGATTCAAAACTTCGTTGTTGTTGTTTAGTT
GACAACAATTTTTTAGTCGTTGGGATAATTTCTTCAGGATGTCGCGTTAA
GGTCGCTTCCTTAGACATAGCATTAAAAAGAAATACCCTTTGTCTCCTAT
AGTATTCATGTGATAATTTCCTATACTTTTAAAAGGCTTTCAACAACAAT
AAGATCTTTTGTCGTTATGTAACCAATGATTTGTGGCTTCAGTCTTTTTC
TGTTTCAAAAAAGGGAACTTTTTTCTTGAAATAAACTCTTTTTCGTGAGC
TACTATATACCATAAAATGTAACAAGAAAAGGGGTCTTTAAATTTATTTA
TTTTTTTCTTTGTTGTACTTTCTACAGTGTTTTTTTCTCATCCAAATTCT
CGTTTTTGTATTGCTTTCTCTATCACGAACTAGTAATATGGCCTTATTAA
GGGAAATCCAAGCTCACGAAATACTTCTCAAAAGCCTCAACCTCAACGAT
AAGATGATAAACATTAACGAAAACAGCTTCTCTTTCATACGTAAAGAACC
TTTCTACCTTAAAAAGGGGGACTATTTTCAAACCCTATTTATTGTTGATA
ACAGAAAATGCATCCTCTTTCTAATACCTAACTTGGTCAAAAAGTTTTGT
TTCAAATTTCGACACAGTGATAAGGAAAGGAAAAGTTCGTCAGTATAGCG
GAATTAGATTATCGTCTTTTTTGTATTTCCGTAACAAAATAATGAGTCGG
TCCTTTGTTTCCTCTTTCAGTTGAGATGTTTTTTTTCTTTCTTTTCTTTC
ATCTTATGATCAAATAATAATAAAAAAGCCAAAATTGCTCTTGGCTTTAA
TTGCTCCTTCTCTGTTCTTTTTGTTATTTTGGATGTGTTTTTTTTTTGTT
TTTGACTTTTCGAACATGTGGCGTAGATGTGTGACGTCACATTTGCTGAC
GAATGAATGAGCATACAGACATGTGATGATATGCGGAATATAATGATAAT
GAAATAGTGTTAATTTTTAATTATGAAACATTTAATTGCGTTTCATTGTC
TTATTTTTGTTGATATTCTTACTCACTTCTTCAACAACAAAAACTGATAC
AATCTGTTCACTCATTTTTCATACGAAACTTGTTAATGCCTTGTGAAAAG
TTAACCCTACTCGTCGAAAAAAATAAATCGTTATCTAAAATAAGCTTTCT
TATTCTCTATCACTATCAGCACTTTGTCATGCACTTAAAAAGAAGATATT
TTACAGGATTTGTTTAAAGACCCCAAAAAACATCATCAAACACTTTACAT
TCATGATGTCATGAATAAAGCTCTGTAACATTATCTTGAATCAAACATCA
TTCATATTATATGTGTGTCTTTTGATCTAAATACACATTGAGATTTTGTC
TGAAACATCACTACTCATCTTTTGACGTCACACTGTATTAATCTATTCAA
CCCATATATATCTGTTGAGGAAAGGCTCTATTTTGACGACTATACATGAT
CAACGAGTGTTTTGTTATGATATTTCGAGGTGTACTGCCTCTTTTCTTTT
CGTGTGTTGTTTAATCACGTATTCAGGAAAAATATTAATATTACTGTTTA
ATTTTATGATGACGTCAGCCTCTTTTTTTTGCATCCCTCGATTTTTTAAG
ATACTTCGAAACTAAATACATTTATGTAAATTTTAATGAGTTTTCTTGTT
TCTATAAACTCGTGGAATCATGTGAAATTTGTTGCAAAGTCATTGCTATT
TTTCCAATCAGAAATTTTTTTCGTGTGCGAAATTTAAGTATTCGGGTTCC
ATTTGGTGTTTTTTTAGAATTTTAAGAAGATTTTATGAAATAAACAGATA
AGAGAGAGGACGGCAAAAGCAGAAAATTGAAAACATTGTAAAAGAATTGA
AAATAAGGGATGAAATATAAGAAAGAAAGGGTTTTATGGCAATAAACATT
TGACTACAAAGAAAGCACGTGGCTTTTTATTGACAACAAAATGAATTTGC
TAAAGTATATAATTTTCCTTTTTTTCTTTCTTTTTTTTCTTCTTTCGTTT
CTTTCCCTTTCTTATTTTTTATCGTATTTTTGTTATTCAAGACTTATCTC
CCTTTGCGACAGCTGGAACAAAAAGAATGTAAAGAGGCATGAATACATCA
CAACCAAATTTTTCCCAACACAACTAACACAACACGCTTCTTTTCTTCAG
AAAATTTCTTTTCAAAAAGCTAGATTTTCTCATTGTTTTCCCAAAAGTTC
ATTCGTTTTTTTAAGACTTCTCAACTCAACATCTTCCCATCATTCTCCAA
GGAATTCAATCTTATCTTTCTAATATCACTGAACACTTTCCTTTCATCTT
TCATCTTGATCTACACCCTTAAAGGCCCAGACCTAAATTATTCTATCCTT
TGAACTGAACGAAACCATTTTTTTATTATGGCCGGTTCTTTTATGACATG
TCTGTCTGGCGCTCTATTTAATATACTCCCCGATAAGAATCGTATAATAA
AAATCTTTTTTCCTAAATGTCTTTAAACGTTTTCCTTCACTGATTAACTT
AATCAAAACATTGGAGATTAATTTTATTTTTTTTCTTCTACAGCGGAACC
TTTACCTCTGATGGATTTATGCCGATTGACCATTCGTCAACAAGTTGGTA
AAGAAAATCTCACTCAAGACACTTTAGATTCTTTTAATATCCCAAGGCAG
ATGAAACAATACTTAGTCTACAAATGGTAAAGCATAATGACGAGTTGCAG
AGGATAGAGTAAGCTCCAAGGGGAAAAGACTGAATTCTCATCTCACAATT
CTCTGGTGTTCTCTTGGCAAAGAAGGAGATTTAGGAATGTCGAAGGAATG
ATTGGTCAAAGGATTGAGGATGGAGAACAAAAACAAAAGAATGATCCAAT
CATTTCCTTGTATCATCGTTCATCATCAGAGTCCTTCTCTTATTCAAAAG
GCAGGAAAGTTTAATTGGAAATCATCAAAAAACCGACGGATTGCGGTATA
CGTCCATCAACTTAATTGGCATGTTCCACTTACCCTTATTATTACGAAGA
AGGCGATAAAAAATTATATATTGTTATAATGACAATCTGGTTGAATGGAG
AAGACAATACAAGCTTTTGTTTTGTGAACAGATGTTGGTTGTTATTATTG
TGTTAAAAAGCACATAGATGAAAAGATTAAAGCAATGGAAATTGTATTGC
TATTGGATATTCGCCGGTCGTTGGTTATACCATTAAACGAGGCGATTTCG
GAAATAGTTAACCGATTCTCGTTTCGTCTAATTTGAGGTTCCTGTAGTTA
AGATGCCCACAGAATGAAAAAAAAATTACCTCTTACTAAAGCTTAAATGA
CTCAATTTGTGTTGATGTTGTTTTTTAAATTTGATTCTTTTTTTAATACA
ATTATTTTAACGGCTTTTGTTTCTCTTACTGCTCAAAGTATACATGATTA
AAGTTAAGCTGCTCTGTTTTTATCTTTCTTGTGATTGAAGGGAAAAAATA
TTTTACTGAATCAATTTTAACAGATTTTTCAGTCTAAAAATGGAAATTTC
AAGCCGTTTAGATTAAAAATTTTAGGTTAAAGAATTTTTTTAAATCATTT
TAGAAACATAACTGGTCATTAGAGAGGGCCAGTTTTCTTGTACACATTCT
TTATATTGACAAAACACCACGACCCTATCCATTTTCAAATTGGAAAAAAC
TTTTTCTTATAATTTAGAGGAAAAATTTGAAATAATTTATACTTTGTATT
ATAGATTTATGATAATTTATGCGGAGAACTGTATCAAAAAAGTTCATCTA
TATTTATTACATACCTATTTTGTTGTTTTTAGTTTAGCATTATTATTATA
ATTAAGTGTTTATTATTATTTTTTAAAAGAAAGAATTTTATCAGTTTTAG
AGAGATTTTTTGAAAACAAATCAACAGTTTTTACAAATTATTATGAAAAG
TAAATTTTACTTTCTCTTCATAACTACCATATACGTTTCCCCTATTAAAC
ACCTTTGTTTTCTCCTTAATTTTCCCTTTTCCCTTGTTATGGAGATTATT
AAAATAGCTCCTTTTTCACATTCCGCCTTAAAATAATCTATATTTTGACA
TGTTTTGCTTTACCCTTTACCTTTATCCATCCCTCAACTCCCCTGACGAA
AACATTTAATTTATTTTTTTATTTTTTGACATTTTATTTTTCAATTTGAT
TTTTTTGCAATGCAAAATTTATCCGCCTTATGTAAAATTCTTTTCTCAGA
GATATATTTTATCGCCATTTGCGATTACATTAAACTCGTTGATTTTTGTG
ATTGGATATTGTTGGTCTCACCTTTGATTTGATATTTTAATTGAGTCTTT
TTATCCTAGAGATCAGGATGCCAG

Coding sequence (CDS) from alignment at sc0000700:118748..125021-

>TCONS_00028727 ID=TCONS_00028727|Name=TCONS_00028727|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at sc0000700:118748..125021- (Clytia hemisphaerica)
CGGAACCTTTACCTCTGATGGATTTATGCCGATTGACCATTCGTCAACAA
GTTGGTAAAGAAAATCTCACTCAAGACACTTTAGATTCTTTTAATATCCC
AAGGCAGATGAAACAATACTTAGTCTACAAATGGTAAATGGGCTCGCGTA
TCAGTTCAGCCAAAAGGACCACTGAAACCCTTAATAACGGTAAAGAAACC
AAAATAAAGCGACGAGGATTAAAACACGGTTGTGGCAAAAGAGACACTTT
AAATCAAAACGAGAATTGTTTTCCCAGACCACGCAAACTGGAAATATTAT
TGGATAGGCCACCGGCCAGCCGAAAGGTACAGGAATATCATGGGTGGAAT
ACAGATGACCGTAGCATGAATATTTACGTTAAAGAAGACGATTGTAGAAT
TTCTCATAGACACCCTGTAGCACAAAGTACAGATGCTATAAGGGGGAAAG
TTGGATTTTCTAAAGGACTTCATGTATGGGACTATACTTGGTCAACTCGT
CAACGAGGCACACACGCCGTAGTAGGAATCGCAACGAAAAAAGCTAATTT
ACATTGTGCTGGATATCATTGTCTGGTCGGTGCAAATCAAGAAAGTTGGG
GATGGGACTTGGGACGTAATAAATTATTTCATAACGAAAAAGTAGTTTCT
TCACAGACTTATCCAAAAAATTTAGGCTCAGATGCGAATTTTATAGTTCC
AGATACCATTCGTTGTATATTGGATATGGATAGAGGAGAATTAAGTTTCG
AAGTAGATGGACAATATTTAGGAGTAGCATTTACTGGTCTACAAGGACAA
ACTGTTTACCCGATAGTATCGGCAGTATGGGGACATTGTGAAGTCAAAAT
GAACTACATTGGTGGCTTAGAACCGGAACCTTTACCTCTGATGGATTTAT
GCCGATTGACCATTCGTCAACAAGTTGGTAAAGAAAATCTCACTCAAGAC
ACTTTAGATTCTTTTAATATCCCAAGGCAGATGAAACAATACTTAGTCTA
CAAATGGTAAATGGGCTCGCGTATCAGTTCAGCCAAAAGGACCACTGAAA
CCCTTAATAACGGTAAAGAAACCAAAATAAAGCGACGAGGATTAAAACAC
GGTTGTGGCAAAAGAGACACTTTAAATCAAAACGAGAATTGTTTTCCCAG
ACCACGCAAACTGGAAATATTATTGGATAGGCCACCGGCCAGCCGAAAGG
TACAGGAATATCATGGGTGGAATACAGATGACCGTAGCATGAATATTTAC
GTTAAAGAAGACGATTGTAGAATTTCTCATAGACACCCTGTAGCACAAAG
TACAGATGCTATAAGGGGGAAAGTTGGATTTTCTAAAGGACTTCATGTAT
GGGACTATACTTGGTCAACTCGTCAACGAGGCACACACGCCGTAGTAGGA
ATCGCAACGAAAAAAGCTAATTTACATTGTGCTGGATATCATTGTCTGGT
CGGTGCAAATCAAGAAAGTTGGGGATGGGACTTGGGACGTAATAAATTAT
TTCATAACGAAAAAGTAGTTTCTTCACAGACTTATCCAAAAAATTTAGGC
TCAGATGCGAATTTTATAGTTCCAGATACCATTCGTTGTATATTGGATAT
GGATAGAGGAGAATTAAGTTTCGAAGTAGATGGACAATATTTAGGAGTAG
CATTTACTGGTCTACAAGGACAAACTGTTTACCCGATAGTATCGGCAGTA
TGGGGACATTGTGAAGTCAAAATGAACTACATTGGTGGCTTAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016294XLOC_016294Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
SPRY domain-containing SOCS box proteinTCONS_00028727-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028727-exon-sc0000700-1575043694:124615..125021TCONS_00028727-exon-sc0000700-1575043694:124615..125021Clytia hemisphaericaexon
TCONS_00028727-exon-sc0000700-1575043694:123601..124417TCONS_00028727-exon-sc0000700-1575043694:123601..124417Clytia hemisphaericaexon
TCONS_00028727-exon-sc0000700-1575043694:118748..120528TCONS_00028727-exon-sc0000700-1575043694:118748..120528Clytia hemisphaericaexon
TCONS_00028727-exon-sc0000700-1510915933:124615..125021TCONS_00028727-exon-sc0000700-1510915933:124615..125021Clytia hemisphaericaexon
TCONS_00028727-exon-sc0000700-1510915933:123601..124417TCONS_00028727-exon-sc0000700-1510915933:123601..124417Clytia hemisphaericaexon
TCONS_00028727-exon-sc0000700-1510915933:118748..120528TCONS_00028727-exon-sc0000700-1510915933:118748..120528Clytia hemisphaericaexon
TCONS_00028727-exon-sc0000700-1491911889:124615..125021TCONS_00028727-exon-sc0000700-1491911889:124615..125021Clytia hemisphaericaexon
TCONS_00028727-exon-sc0000700-1491911889:123601..124417TCONS_00028727-exon-sc0000700-1491911889:123601..124417Clytia hemisphaericaexon
TCONS_00028727-exon-sc0000700-1491911889:118748..120528TCONS_00028727-exon-sc0000700-1491911889:118748..120528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000700supercontigsc0000700:118748..125021 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.800944	0.552072	0.306252	0.329328	147.944	122.867	54.1744	55.6203	4.1696	9.67472	6.34039	39.5878	25.2238	18.2493	29.838	27.5089	12.6836	21.6088	11.0568	17.1463	11.1978	10.7301	7.95745	8.4019	7.87703	9.87662	93.406	93.4884	130.421	130.232
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001496SOCS_box
IPR003877SPRY_dom
IPR001870B30.2/SPRY
IPR013320ConA-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0035556intracellular signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0035556 intracellular signal transduction
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00028727 vs. Swiss-Prot (Human)
Match: SPSB1 (SPRY domain-containing SOCS box protein 1 OS=Homo sapiens GN=SPSB1 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 3.344e-102
Identity = 147/243 (60.49%), Postives = 185/243 (76.13%), Query Frame = 3 
Query:  627 RPRKLEILLDRPPASRKVQEYHGWNTDDRSMNIYVKEDDCRISHRHPVAQSTDAIRGKVGFSKGLHVWDYTWSTRQRGTHAVVGIATKKANLHCAGYHCLVGANQESWGWDLGRNKLFHNEKVVSSQTYPKNLGSDANFIVPDTIRCILDMDRGELSFEVDGQYLGVAFTGLQGQTVYPIVSAVWGHCEVKMNYIGGLEPEPLPLMDLCRLTIRQQVGKENLTQDTLDSFNIPRQMKQYLVYK 1355
            +P +L++LLD PP S  VQ  H WN +DRS+N++VKEDD  I HRHPVAQSTDAIRGKVG+++GLHVW  TW+ RQRGTHAVVG+AT  A LH  GY  LVG N ESWGWDLGRN+L+H+ K   S+TYP  L  D  FIVPD+    LDMD G LSF VDGQY+GVAF GL+G+ +YP+VSAVWGHCE++M Y+ GL+PEPLPLMDLCR ++R  +G+E L +  + +  +P  +K YL+Y+
Sbjct:   33 KPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYLNGLDPEPLPLMDLCRRSVRLALGRERLGE--IHTLPLPASLKAYLLYQ 273
The following BLAST results are available for this feature:
BLAST of TCONS_00028727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPSB13.344e-10260.49SPRY domain-containing SOCS box protein 1 OS=Homo ... [more]
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