TCONS_00028728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028728
Unique NameTCONS_00028728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028728 ID=TCONS_00028728|Name=TCONS_00028728|organism=Clytia hemisphaerica|type=transcript|length=2647bp
GAAATCGACTTGGGCTTTTGACAAAAAAGCTGTTGGTAAGAGACTTCAGA
TTGTTGAATAATAATTGAACCAAAGTACCGCCATCATAACGCGTTTACAC
AGCTTCCGAATTCACAGAGACTACCTAAGGATGGGCTCGCGTATCAGTTC
AGCCAAAAGGACCACTGAAACCCTTAATAACGGTAAAGAAACCAAAATAA
AGCGACGAGGATTAAAACACGGTTGTGGCAAAAGAGACACTTTAAATCAA
AACGAGAATTGTTTTCCCAGACCACGCAAACTGGAAATATTATTGGATAG
GCCACCGGCCAGCCGAAAGGTACAGGAATATCATGGGTGGAATACAGATG
ACCGTAGCATGAATATTTACGTTAAAGAAGACGATTGTAGAATTTCTCAT
AGACACCCTGTAGCACAAAGTACAGATGCTATAAGGGGGAAAGTTGGATT
TTCTAAAGGACTTCATGTATGGGACTATACTTGGTCAACTCGTCAACGAG
GCACACACGCCGTAGTAGGAATCGCAACGAAAAAAGCTAATTTACATTGT
GCTGGATATCATTGTCTGGTCGGTGCAAATCAAGAAAGTTGGGGATGGGA
CTTGGGACGTAATAAATTATTTCATAACGAAAAAGTAGTTTCTTCACAGA
CTTATCCAAAAAATTTAGGCTCAGATGCGAATTTTATAGTTCCAGATACC
ATTCGTTGTATATTGGATATGGATAGAGGAGAATTAAGTTTCGAAGTAGA
TGGACAATATTTAGGAGTAGCATTTACTGGTCTACAAGGACAAACTGTTT
ACCCGATAGTATCGGCAGTATGGGGACATTGTGAAGTCAAAATGAACTAC
ATTGGTGGCTTAGAACCGGAACCTTTACCTCTGATGGATTTATGCCGATT
GACCATTCGTCAACAAGTTGGTAAAGAAAATCTCACTCAAGACACTTTAG
ATTCTTTTAATATCCCAAGGCAGATGAAACAATACTTAGTCTACAAATGG
TAAAGCATAATGACGAGTTGCAGAGGATAGAGTAAGCTCCAAGGGGAAAA
GACTGAATTCTCATCTCACAATTCTCTGGTGTTCTCTTGGCAAAGAAGGA
GATTTAGGAATGTCGAAGGAATGATTGGTCAAAGGATTGAGGATggagaa
caaaaacaaaagaatgatcCAATCATTTCCTTGTATCATCGTTCATCATC
AGAGTCCTTCTCTTATTCAAAAGGCAGGAAAGTTTAATTGGAAATCATCA
AAAAACCGACGGATTGCGGTATACGTCCATCAACTTAATTGGCATGTTCC
ACTTACCCTTATTATTACGAAGAAGGCgataaaaaattatatattgttAT
AATGACAATCTGGTTGAATGGAGAAGACAATACAAGCTTTTGTTTTGTGA
ACAGATGTTGGTTGTTATTATTGTGTTAAAAAGCACATAGATGAAAAGAT
TAAAGCAATGGAAATTGTATTGCTATTGGATATTCGCCGGTCGTTGGTTA
TACCATTAAACGAGGCGATTTCGGAAATAGTTAACCGATTCTCGTTTCGT
CTAATTTGAGGTTCCTGTAGTTAAGATGCCcacagaatgaaaaaaaaatt
acctcttACTAAAGCTTAAATGACTCAATTTGtgttgatgttgtttttta
aatttgattctttttttaatacaaTTATTTTAACGGCTTTTGTTTCTCTT
ACTGCTCAAAGTATACATGATTAAAGTTAAGCTGCTCTGTTTTTATCTTT
CTTGTGATTgaagggaaaaaatattttactgaatcaattttaacagattt
ttcagtctaaaaatggaaatttcaaGCCGTTTAGATTAAAAATTTTaggt
taaagaatttttttaaatcattttagaAACATAACTGGTCATTAGAGAGG
GCCAGTTTTCTTGTACACATTCTTTATATTGACAAAACACCACGACCCTA
TCCATTTtcaaattggaaaaaactttttcttataatttagaggaaaaatt
tgaaataatttatacTTTGTATTATAgatttatgataatttatgcGGAGA
ACTGTATCAAAAAAGTTCATCTATATTTATTACATAcctattttgttgtt
tttagtttagcattattattataattaagtgtttattattattttttaaa
agaaagaattttatcagttttagagagattttttgaaaacaaatcaacag
tttttacaaattattatgaaaagtaaattttactttCTCTTCATAACTAC
CATATACGTTTCCCCTATTAAAcacctttgttttctccttaaTTTTCCCT
TTTCCCTTGTTATGGAGATTATTAAAATAGCTCCTTTTTCACATTCCGCC
TTAAAATAATCTATATTTTGACATGTTTTGCTTTACCCTTTACCTTTATC
CATCCCTCAACTCCCCTGACGAAaacatttaatttatttttttatttttt
gacattttatttttcaatttgatttttttgcaatGCAAAATTTATCCGCC
TTATGTAAAATTCTTTTCTCAGAGATATATTTTATCGCCATTTGCGATTA
CATTAAACTCGTTGATTTTTGTGATTGGATATTGTTGGTCTCacctttga
tttgatattttaattGAGTCTTTTTATCCTAGAGATCAGGATGCCag
Run BLAST on NCBI

transcript from alignment at sc0000700:118748..126465-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028728 ID=TCONS_00028728|Name=TCONS_00028728|organism=Clytia hemisphaerica|type=transcript|length=7718bp|location=Sequence derived from alignment at sc0000700:118748..126465- (Clytia hemisphaerica)
GAAATCGACTTGGGCTTTTGACAAAAAAGCTGTTGGTAAGAGACTTCAGG TATTAACTTTACCTTAGTGAAAGTACTTATCCAAAAGAAAGGTAACCAGA AGAGCTAGAGCTAGAAATTAATTATCGTGTAGATACAGTTGCTGGTAGAG AGAAGAATAGTAACCAGAAGAAGAAGAAGAAGAATCAAAGTTTTTTATGC TGTAGAAAGACAGAACAGGAAAGACAAACAAAGTTCTTAAAAAGTCGGCA TCGATGATGAGGAGGAAGAAATCGATTTTATTGTTTCGTGCTATGATTAT ACAGTGTGTTGTTTATGATGAGGGTGATCAACTCGTTCTATAATCAGTCA CCATCTGTTTTGGTTGATTTCAAACAATGCATAAATTTGATGAATTTATA ATTTCATTTAAATTGTTCTTCCTTTTTTTTTGTTTCTTTCCTTTTGAAAC AAAATGATCAAATTTTTGTTCACACACCAGAACGCCTCTTTGACTTTTTC GTTCTTCAAAATGATTTTTGATTGAACCTCAACAGATGAGAAATCATGCT TGAGTGAGCAAACTAATCTATTGAAAAAAAATTCCCGTTTGCTTTGAACG GTGCTATGTAGCTGAGAAAAAAGAAACAATCATTCGGACCAACCAACCAT AGAAAAATGTTCATTTCTGAATGAACTTTCCCGCGCATTTTAGGTTTATT TTAATACATTGGTGTTTTTTTTCCCGAAGAAAAAGCACGTGGTCAATTTA AGATTCGCGACAGGGGGTTAAAACACAACTAACGGGTTTTTTATCATGAT TATCGAATAAAAAGAAATCTTAACAGTTCTTTCCTATATTATACTAGTCG TAAAGAATGTCATTATTTCGGGTCAGGCCCCAAGAAAGTTTTTACTTAAA ATAGGGAATTTTAAATATCCAACTACGTTTTTAACTAAAATTTCCAATAG AATTATTCTAAAATAACACGTTTTAAATAATATCTAAATGAAACAGTGTG TCTTCAAAGAGAGGAAAAAGGTCTTCAAGTAAAATTATTGAATTTGCTTT CCGTTATATATCCTTTTTAATAGTTTTGTTTTCAACTTTTAAATCAGGAC AGCCCAAAAGATTTTTTGTTGTTACTCTGTTAAGAAGTGGATCATCATAC AGGGGTCTCAGGGAGAAGTAAATCTTAACATATTTGAAAAATGAAAGAAA AAAAAGCTAGATATGAATATTTCAAACTGAAATTTTTTTTCTTTCAATAT GATATCCCCCGTCTAGTTTTCAAATATTCACGCTGTCCATGAAGAAAAAA GAGCACGACACTTAATTATGCAACCGGCCTTGAAATCCGCTACTCGTTTT CATAAATGTTGTTCAATACATAACAACTCTTTTTCTCGCCCGTCTCTCGT TGCTTTCACAATCACAATTTATGCGAAAAAACGTCATAATTTATTCGGAA GTGAAACATAAAAAACAATCGGTTTAATTATGCGTTTAATTCTCATTGTT AGAATTTATTCGTTGTTGAATAGAGTTTCTTTTGTTATTGATTTCTCAAT AACGTCTCTCTATTTACGACCACTTGTGTTATTCAAAGCAAACGGGCAAA ATATAAGAGAAGTTTATGGTTCAATGAATTTCAGATCAAAACCATAAACC AATGAGAGCACGCACTCTTAACGAGAAAAACACTCGTGAATATTCGTTTT CAAGCATTTCTTTGAAATCAAAAAGAACAGACGACGATTTGAACGAGTAT TAGTTTTTTTTCTCGACAACACTTGATGATATAAACAGTAGAATCGAGAA GTGTTTATAACAAGAAGAGACAGAATACAGAAGGGACTAGCTTGAACTAC TGTGAGATTTTCTTTGAAGAAGACTTTTGTTGTGTTGTATCACTTACTGG CTTTCGTTGAGTGCATTTATATTGCCCATTTGGTTTATTGGTGAAAAAAG CCACGAAGAAATTCATTTGTTTCCATCAAAAAAGAAGAAGAATTATTTTC TCGATGTGTAAATTTTGAGAAATAATTTTGTTTTTACTGGATTTTTAGAT TGTTGAATAATAATTGAACCAAAGTACCGCCATCATAACGCGTTTACACA GCTTCCGAATTCACAGAGACTACCTAAGGATGGGCTCGCGTATCAGTTCA GCCAAAAGGACCACTGAAACCCTTAATAACGGTAAAGAAACCAAAATAAA GCGACGAGGATTAAAACACGGTTGTGGCAAAAGAGACACTTTAAATCAAA ACGAGAATTGTTTTCCCAGACCACGCAAACTGGAAATATTATTGGATAGG CCACCGGCCAGCCGAAAGGTACAGGAATATCATGGGTGGAATACAGATGA CCGTAGCATGAATATTTACGTTAAAGAAGACGATTGTAGAATTTCTCATA GACACCCTGTAGCACAAAGTACAGATGCTATAAGGGGGAAAGTTGGATTT TCTAAAGGACTTCATGTATGGGACTATACTTGGTCAACTCGTCAACGAGG CACACACGCCGTAGTAGGAATCGCAACGAAAAAAGCTAATTTACATTGTG CTGGATATCATTGTCTGGTCGGTGCAAATCAAGAAAGTTGGGGATGGGAC TTGGGACGTAATAAATTATTTCATAACGAAAAAGTAGTTTCTTCACAGAC TTATCCAAAAAATTTAGGCTCAGATGCGAATTTTATAGTTCCAGATACCA TTCGTTGTATATTGGATATGGATAGAGGAGAATTAAGTTTCGAAGTAGAT GGACAATATTTAGGAGTAGCATTTACTGGTCTACAAGGACAAACTGTTTA CCCGATAGTATCGGCAGTATGGGGACATTGTGAAGTCAAAATGAACTACA TTGGTGGCTTAGAACGTAAGTTTTGTTTTGTTTCTTGTCACGTATTTTTT CTTCTCAGTTTTTATCCCCCCAAAAAATACCATGTCTAATTTTCCATCTT CTCTTTCTCAGTTTCTTTTCTTCTTCTTCTTCATCTTATATATCTATCTT TTCTCCTTTATTTCACCTAAGATTTTTCTCCCTTTGTGTTGTGTTTGATA AACTTCGTATGAAAGAGAGAGCTGCTTGCACGAGAGAAAGTAGAAAGAAT TTTTTCTTTTTTCAGTCAATCAGAGTCCCAGTGTTTGAATTCAAGCGTGT CTTATTTTCTTTTCAAAGTTAACACTCAACTGCAAAACTCTGTGTATTTT CCTTTTCTCTGTGTTATTATTGAACTTTTCGCAGTGACAAAGTGACATTT TTTCTGCCAATATTTGTTTTCTTTGAAAAAGGGTCTCACTCATAGAGTCT CAAACAGTAGGCAACCTCGAATTTCTTTGTCAAGAAATCTCATGCCTCAA GGCTTTTCATATGTGATTCAAAACTTCGTTGTTGTTGTTTAGTTGACAAC AATTTTTTAGTCGTTGGGATAATTTCTTCAGGATGTCGCGTTAAGGTCGC TTCCTTAGACATAGCATTAAAAAGAAATACCCTTTGTCTCCTATAGTATT CATGTGATAATTTCCTATACTTTTAAAAGGCTTTCAACAACAATAAGATC TTTTGTCGTTATGTAACCAATGATTTGTGGCTTCAGTCTTTTTCTGTTTC AAAAAAGGGAACTTTTTTCTTGAAATAAACTCTTTTTCGTGAGCTACTAT ATACCATAAAATGTAACAAGAAAAGGGGTCTTTAAATTTATTTATTTTTT TCTTTGTTGTACTTTCTACAGTGTTTTTTTCTCATCCAAATTCTCGTTTT TGTATTGCTTTCTCTATCACGAACTAGTAATATGGCCTTATTAAGGGAAA TCCAAGCTCACGAAATACTTCTCAAAAGCCTCAACCTCAACGATAAGATG ATAAACATTAACGAAAACAGCTTCTCTTTCATACGTAAAGAACCTTTCTA CCTTAAAAAGGGGGACTATTTTCAAACCCTATTTATTGTTGATAACAGAA AATGCATCCTCTTTCTAATACCTAACTTGGTCAAAAAGTTTTGTTTCAAA TTTCGACACAGTGATAAGGAAAGGAAAAGTTCGTCAGTATAGCGGAATTA GATTATCGTCTTTTTTGTATTTCCGTAACAAAATAATGAGTCGGTCCTTT GTTTCCTCTTTCAGTTGAGATGTTTTTTTTCTTTCTTTTCTTTCATCTTA TGATCAAATAATAATAAAAAAGCCAAAATTGCTCTTGGCTTTAATTGCTC CTTCTCTGTTCTTTTTGTTATTTTGGATGTGTTTTTTTTTTGTTTTTGAC TTTTCGAACATGTGGCGTAGATGTGTGACGTCACATTTGCTGACGAATGA ATGAGCATACAGACATGTGATGATATGCGGAATATAATGATAATGAAATA GTGTTAATTTTTAATTATGAAACATTTAATTGCGTTTCATTGTCTTATTT TTGTTGATATTCTTACTCACTTCTTCAACAACAAAAACTGATACAATCTG TTCACTCATTTTTCATACGAAACTTGTTAATGCCTTGTGAAAAGTTAACC CTACTCGTCGAAAAAAATAAATCGTTATCTAAAATAAGCTTTCTTATTCT CTATCACTATCAGCACTTTGTCATGCACTTAAAAAGAAGATATTTTACAG GATTTGTTTAAAGACCCCAAAAAACATCATCAAACACTTTACATTCATGA TGTCATGAATAAAGCTCTGTAACATTATCTTGAATCAAACATCATTCATA TTATATGTGTGTCTTTTGATCTAAATACACATTGAGATTTTGTCTGAAAC ATCACTACTCATCTTTTGACGTCACACTGTATTAATCTATTCAACCCATA TATATCTGTTGAGGAAAGGCTCTATTTTGACGACTATACATGATCAACGA GTGTTTTGTTATGATATTTCGAGGTGTACTGCCTCTTTTCTTTTCGTGTG TTGTTTAATCACGTATTCAGGAAAAATATTAATATTACTGTTTAATTTTA TGATGACGTCAGCCTCTTTTTTTTGCATCCCTCGATTTTTTAAGATACTT CGAAACTAAATACATTTATGTAAATTTTAATGAGTTTTCTTGTTTCTATA AACTCGTGGAATCATGTGAAATTTGTTGCAAAGTCATTGCTATTTTTCCA ATCAGAAATTTTTTTCGTGTGCGAAATTTAAGTATTCGGGTTCCATTTGG TGTTTTTTTAGAATTTTAAGAAGATTTTATGAAATAAACAGATAAGAGAG AGGACGGCAAAAGCAGAAAATTGAAAACATTGTAAAAGAATTGAAAATAA GGGATGAAATATAAGAAAGAAAGGGTTTTATGGCAATAAACATTTGACTA CAAAGAAAGCACGTGGCTTTTTATTGACAACAAAATGAATTTGCTAAAGT ATATAATTTTCCTTTTTTTCTTTCTTTTTTTTCTTCTTTCGTTTCTTTCC CTTTCTTATTTTTTATCGTATTTTTGTTATTCAAGACTTATCTCCCTTTG CGACAGCTGGAACAAAAAGAATGTAAAGAGGCATGAATACATCACAACCA AATTTTTCCCAACACAACTAACACAACACGCTTCTTTTCTTCAGAAAATT TCTTTTCAAAAAGCTAGATTTTCTCATTGTTTTCCCAAAAGTTCATTCGT TTTTTTAAGACTTCTCAACTCAACATCTTCCCATCATTCTCCAAGGAATT CAATCTTATCTTTCTAATATCACTGAACACTTTCCTTTCATCTTTCATCT TGATCTACACCCTTAAAGGCCCAGACCTAAATTATTCTATCCTTTGAACT GAACGAAACCATTTTTTTATTATGGCCGGTTCTTTTATGACATGTCTGTC TGGCGCTCTATTTAATATACTCCCCGATAAGAATCGTATAATAAAAATCT TTTTTCCTAAATGTCTTTAAACGTTTTCCTTCACTGATTAACTTAATCAA AACATTGGAGATTAATTTTATTTTTTTTCTTCTACAGCGGAACCTTTACC TCTGATGGATTTATGCCGATTGACCATTCGTCAACAAGTTGGTAAAGAAA ATCTCACTCAAGACACTTTAGATTCTTTTAATATCCCAAGGCAGATGAAA CAATACTTAGTCTACAAATGGTAAAGCATAATGACGAGTTGCAGAGGATA GAGTAAGCTCCAAGGGGAAAAGACTGAATTCTCATCTCACAATTCTCTGG TGTTCTCTTGGCAAAGAAGGAGATTTAGGAATGTCGAAGGAATGATTGGT CAAAGGATTGAGGATGGAGAACAAAAACAAAAGAATGATCCAATCATTTC CTTGTATCATCGTTCATCATCAGAGTCCTTCTCTTATTCAAAAGGCAGGA AAGTTTAATTGGAAATCATCAAAAAACCGACGGATTGCGGTATACGTCCA TCAACTTAATTGGCATGTTCCACTTACCCTTATTATTACGAAGAAGGCGA TAAAAAATTATATATTGTTATAATGACAATCTGGTTGAATGGAGAAGACA ATACAAGCTTTTGTTTTGTGAACAGATGTTGGTTGTTATTATTGTGTTAA AAAGCACATAGATGAAAAGATTAAAGCAATGGAAATTGTATTGCTATTGG ATATTCGCCGGTCGTTGGTTATACCATTAAACGAGGCGATTTCGGAAATA GTTAACCGATTCTCGTTTCGTCTAATTTGAGGTTCCTGTAGTTAAGATGC CCACAGAATGAAAAAAAAATTACCTCTTACTAAAGCTTAAATGACTCAAT TTGTGTTGATGTTGTTTTTTAAATTTGATTCTTTTTTTAATACAATTATT TTAACGGCTTTTGTTTCTCTTACTGCTCAAAGTATACATGATTAAAGTTA AGCTGCTCTGTTTTTATCTTTCTTGTGATTGAAGGGAAAAAATATTTTAC TGAATCAATTTTAACAGATTTTTCAGTCTAAAAATGGAAATTTCAAGCCG TTTAGATTAAAAATTTTAGGTTAAAGAATTTTTTTAAATCATTTTAGAAA CATAACTGGTCATTAGAGAGGGCCAGTTTTCTTGTACACATTCTTTATAT TGACAAAACACCACGACCCTATCCATTTTCAAATTGGAAAAAACTTTTTC TTATAATTTAGAGGAAAAATTTGAAATAATTTATACTTTGTATTATAGAT TTATGATAATTTATGCGGAGAACTGTATCAAAAAAGTTCATCTATATTTA TTACATACCTATTTTGTTGTTTTTAGTTTAGCATTATTATTATAATTAAG TGTTTATTATTATTTTTTAAAAGAAAGAATTTTATCAGTTTTAGAGAGAT TTTTTGAAAACAAATCAACAGTTTTTACAAATTATTATGAAAAGTAAATT TTACTTTCTCTTCATAACTACCATATACGTTTCCCCTATTAAACACCTTT GTTTTCTCCTTAATTTTCCCTTTTCCCTTGTTATGGAGATTATTAAAATA GCTCCTTTTTCACATTCCGCCTTAAAATAATCTATATTTTGACATGTTTT GCTTTACCCTTTACCTTTATCCATCCCTCAACTCCCCTGACGAAAACATT TAATTTATTTTTTTATTTTTTGACATTTTATTTTTCAATTTGATTTTTTT GCAATGCAAAATTTATCCGCCTTATGTAAAATTCTTTTCTCAGAGATATA TTTTATCGCCATTTGCGATTACATTAAACTCGTTGATTTTTGTGATTGGA TATTGTTGGTCTCACCTTTGATTTGATATTTTAATTGAGTCTTTTTATCC TAGAGATCAGGATGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016294XLOC_016294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028728-exon-sc0000700-1575043694:126417..126465TCONS_00028728-exon-sc0000700-1575043694:126417..126465Clytia hemisphaericaexon
TCONS_00028728-exon-sc0000700-1575043694:123601..124417TCONS_00028728-exon-sc0000700-1575043694:123601..124417Clytia hemisphaericaexon
TCONS_00028728-exon-sc0000700-1575043694:118748..120528TCONS_00028728-exon-sc0000700-1575043694:118748..120528Clytia hemisphaericaexon
TCONS_00028728-exon-sc0000700-1510915933:126417..126465TCONS_00028728-exon-sc0000700-1510915933:126417..126465Clytia hemisphaericaexon
TCONS_00028728-exon-sc0000700-1510915933:123601..124417TCONS_00028728-exon-sc0000700-1510915933:123601..124417Clytia hemisphaericaexon
TCONS_00028728-exon-sc0000700-1510915933:118748..120528TCONS_00028728-exon-sc0000700-1510915933:118748..120528Clytia hemisphaericaexon
TCONS_00028728-exon-sc0000700-1491911889:126417..126465TCONS_00028728-exon-sc0000700-1491911889:126417..126465Clytia hemisphaericaexon
TCONS_00028728-exon-sc0000700-1491911889:123601..124417TCONS_00028728-exon-sc0000700-1491911889:123601..124417Clytia hemisphaericaexon
TCONS_00028728-exon-sc0000700-1491911889:118748..120528TCONS_00028728-exon-sc0000700-1491911889:118748..120528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000700supercontigsc0000700:118748..126465 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.4907 0.000295536 1.13164 0.766811 138.958 110.282 62.8401 46.4404 15.3657 20.5591 16.2586 54.2776 44.9934 30.8726 45.1568 41.9549 38.4687 44.9522 30.2463 30.8403 10.9919 11.9512 14.6669 12.6016 14.7841 12.8204 80.0921 61.4757 66.063 56.6234
Blast
BLAST of TCONS_00028728 vs. Swiss-Prot (Human)
Match: SPSB1 (SPRY domain-containing SOCS box protein 1 OS=Homo sapiens GN=SPSB1 PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.107e-103
Identity = 147/243 (60.49%), Postives = 185/243 (76.13%), Query Frame = 2
Query:  269 RPRKLEILLDRPPASRKVQEYHGWNTDDRSMNIYVKEDDCRISHRHPVAQSTDAIRGKVGFSKGLHVWDYTWSTRQRGTHAVVGIATKKANLHCAGYHCLVGANQESWGWDLGRNKLFHNEKVVSSQTYPKNLGSDANFIVPDTIRCILDMDRGELSFEVDGQYLGVAFTGLQGQTVYPIVSAVWGHCEVKMNYIGGLEPEPLPLMDLCRLTIRQQVGKENLTQDTLDSFNIPRQMKQYLVYK 997
            +P +L++LLD PP S  VQ  H WN +DRS+N++VKEDD  I HRHPVAQSTDAIRGKVG+++GLHVW  TW+ RQRGTHAVVG+AT  A LH  GY  LVG N ESWGWDLGRN+L+H+ K   S+TYP  L  D  FIVPD+    LDMD G LSF VDGQY+GVAF GL+G+ +YP+VSAVWGHCE++M Y+ GL+PEPLPLMDLCR ++R  +G+E L +  + +  +P  +K YL+Y+
Sbjct:   33 KPTRLDLLLDMPPVSYDVQLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYTTLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLKGKKLYPVVSAVWGHCEIRMRYLNGLDPEPLPLMDLCRRSVRLALGRERLGE--IHTLPLPASLKAYLLYQ 273          
The following BLAST results are available for this feature:
BLAST of TCONS_00028728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPSB14.107e-10360.49SPRY domain-containing SOCS box protein 1 OS=Homo ... [more]
back to top