TCONS_00028960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028960
Unique NameTCONS_00028960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028960 ID=TCONS_00028960|Name=TCONS_00028960|organism=Clytia hemisphaerica|type=transcript|length=562bp
caaaaatctggtatttttactaaaaaattaaGCTCCCACAAACACTACCA
TCATCTTCCgccaccaaaatcaccaacaaTGGATGAGGATCCACCCAGTG
ATATATCATCCATTGACATAACATCAACAGAGACTCCACCAAAGTGTACA
ACTGCAAATTGCTTCGTTCCAGACGAAGCAAACACCCTTAAATGTTCCAT
GTTAAAATGTTCTCGTTTAGTTCATTTCAAATGCTCTAAACTACCAGCAT
ACCAAGTCCAAATACACTTAAACAATCAAACCCTGAAACGCAACAAAGCA
ACCTTCATCTGCTCAAACTGTGTAGACATCTCAAAAAATATAGAATCGTT
ATGTATGGAGagcgaccaagaaaatttgaaaaatatcatacaCGAGCGTG
ATCAATCGATCAAAGAATaccaaaagaaagtgaaaactcttaaaacaaag
aataagaGCCTAGAAAACGATTCGTACACTGTAGAtgacttcgaaaaaaa
aattaaagaacaaaTCGACACCCTAGGAGAAAGTATCAAAACTTCGATCC
TTCAAGAAATCC
Run BLAST on NCBI

protein sequence of TCONS_00028960-protein

>TCONS_00028960-protein ID=TCONS_00028960-protein|Name=TCONS_00028960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
QKSGIFTKKLSSHKHYHHLPPPKSPTMDEDPPSDISSIDITSTETPPKCT
TANCFVPDEANTLKCSMLKCSRLVHFKCSKLPAYQVQIHLNNQTLKRNKA
TFICSNCVDISKNIESLCMESDQENLKNIIHERDQSIKEYQKKVKTLKTK
NKSLENDSYTVDDFEKKIKEQIDTLGESIKTSILQEI
Run BLAST on NCBI

transcript from alignment at sc0000716:74068..74629

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028960 ID=TCONS_00028960|Name=TCONS_00028960|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at sc0000716:74068..74629 (Clytia hemisphaerica)
GGATTTCTTGAAGGATCGAAGTTTTGATACTTTCTCCTAGGGTGTCGAtt
tgttctttaatttttttttcgaagtcaTCTACAGTGTACGAATCGTTTTC
TAGGCtcttattctttgttttaagagttttcactttcttttggtATTCTT
TGATCGATTGATCACGCTCGtgtatgatatttttcaaattttcttggtcg
ctCTCCATACATAACGATTCTATATTTTTTGAGATGTCTACACAGTTTGA
GCAGATGAAGGTTGCTTTGTTGCGTTTCAGGGTTTGATTGTTTAAGTGTA
TTTGGACTTGGTATGCTGGTAGTTTAGAGCATTTGAAATGAACTAAACGA
GAACATTTTAACATGGAACATTTAAGGGTGTTTGCTTCGTCTGGAACGAA
GCAATTTGCAGTTGTACACTTTGGTGGAGTCTCTGTTGATGTTATGTCAA
TGGATGATATATCACTGGGTGGATCCTCATCCAttgttggtgattttggt
ggcGGAAGATGATGGTAGTGTTTGTGGGAGCttaattttttagtaaaaat
accagatttttg

Coding sequence (CDS) from alignment at sc0000716:74068..74629

>TCONS_00028960 ID=TCONS_00028960|Name=TCONS_00028960|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at sc0000716:74068..74629 (Clytia hemisphaerica)
GATTTCTTGAAGGATCGAAGTTTTGATACTTTCTCCTAGGGTGTCGAttt
gttctttaatttttttttcgaagtcaTCTACAGTGTACGAATCGTTTTCT
AGGCtcttattctttgttttaagagttttcactttcttttggtATTCTTT
GATCGATTGATCACGCTCGtgtatgatatttttcaaattttcttggtcgc
tCTCCATACATAACGATTCTATATTTTTTGAGATGTCTACACAGTTTGAG
CAGATGAAGGTTGCTTTGTTGCGTTTCAGGGTTTGATTGTTTAAGTGTAT
TTGGACTTGGTATGCTGGTAGTTTAGAGCATTTGAAATGAACTAAACGAG
AACATTTTAACATGGAACATTTAAGGGTGTTTGCTTCGTCTGGAACGAAG
CAATTTGCAGTTGTACACTTTGGTGGAGTCTCTGTTGATGTTATGTCAAT
GGATGATATATCACTGGGTGGATCCTCATCCAttgttggtgattttggtg
gcGGAAGATGATGGTAGTGTTTGTGGGAGCttaattttttagtaaaaata
ccagatttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016449XLOC_016449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028960-exon-sc0000716-1491911889:74068..74629TCONS_00028960-exon-sc0000716-1491911889:74068..74629Clytia hemisphaericaexon
TCONS_00028960-exon-sc0000716-1510915933:74068..74629TCONS_00028960-exon-sc0000716-1510915933:74068..74629Clytia hemisphaericaexon
TCONS_00028960-exon-sc0000716-1575043694:74068..74629TCONS_00028960-exon-sc0000716-1575043694:74068..74629Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028960-proteinTCONS_00028960-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000716supercontigsc0000716:74068..74629 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.06667	1.80248	3.12922	1.81674	1.27936	0.391645	0.967295	0.757974	0.312606	0.702528	2.30057	0.816265	0.338133	0.514476	0.809922	0.327446	0.0754476	0.0773314	0.271244	0.335393	0.501469	0.655123	0.230471	0.513154	0.428111	0.982322	3.55823	4.24637	0.618284	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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