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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL79147_cuf2 >transcript:BL79147_cuf2-protein ID=transcript:BL79147_cuf2-protein|Name=transcript:BL79147_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=109bp
MVQTGDTEEYAVGAADAAAGFLGYVDAAAVGAIGTTGDAVFTGTGAEGAK
DSVHSVRAWRLRQVTVWPPKAEPSRQRTQSAVDAADAASSCLGYTDAVAA
GLTRTRDRG Run BLAST on NCBI mRNA from alignment at Sc0000049:1781960..1784105- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL79147_cuf2 ID=transcript:BL79147_cuf2|Name=transcript:BL79147_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2146bp|location=Sequence derived from alignment at Sc0000049:1781960..1784105- (Branchiostoma lanceolatum)
CACGTTTGAAGGTCGGAATTCGAGCACCGACGGACACTAGAACCCTGTGT
CTTGCTGTCGGGGTGAAGCCTCTAAGTACAGCGTTTGGGTGGAGAGTGCG
GTAAAGTGAATGTTGTTATTTGTTGGCGTTTTCTTGAAGTTTTGTTGTAT
TCTTTTTCGGACGCCGTCTGCACACGTGTTGATTTACATTTGTGTAGGTG
TGTGTCTGGCGTCAGCTTTTCTGTCTTTTGCACTGTGTGATTTGTATTTG
ATAGTGTGCGTGGGAAGGGCACTTTGTGAGGAATGGGTTTGGTACGTGGT
TGAAGTACTTATCTTAGAAGGGAGGGAAACTCGTGACAAGAATCCCATAG
TGACCATGTTCGGTGTGTGCCGGCATGGCGGAGGACTGCTCGAGTGGGGC
TTAGGTGTTTTGGATGTCTCATCCGTGTTTCTGACGTTGATGTTCTTTTG
GTATTGAAGTTACAGTATGGCCACCGAGACCCGAGCCGTCCAGACATAAT
GGTCCAGACAGGAGATACCGAAGAGTATGCAGTGGGTGCAGCGGACGCCG
CCGCCGGCTTCCTCGGCTACGTTGACGCTGCTGCGGTGGGCGCCATCGGC
ACCACAGGGGATGCGGTTTTCACTGGCACTGGTGCCGAGGGAGCGAAGGA
TTCCGTCCACTCCGTTAGAGCGTGGAGATTACGGCAAGGTGGCAGTTGTT
ATTTGTTGGAATTCTTGAATTTTTGGTTTATTCCTTTTTTGGACGCCGTC
TGCACACGTGTTGATTTGCTTTGGTGTTCGGGCGTTAGTTTTTTTTAGCT
GCGTGATTTGCATTTGATATTGTGCTTTGGGAGGGCACTTTGTAAGGAAC
TGGTTTGGAACGGGGTTTGAAGTGAATTTGTGTTTAGAAAGGGAGGGAAA
CTCGTGACAAGAATCCCATAGTGACCATGTTCGGTGTGTGCCGGCATGGC
GGAGGACTGCTCGAGTGGGTCTTAGGTGTTTTGGATGTCTCACCCGTGTT
TCTGACGTTGCTGTTCCTTTGGTAATGAAGTTACAGTATGGCCACCGAAA
GCCGAGCCGTCCAGACAAAGGACACAGAGTGCAGTGGATGCCGCGGACGC
CGCCTCCAGCTGCCTTGGCTACACTGACGCTGTTGCAGCGGGCCTCACCA
GGACCAGGGACAGGGGTTGAGGGCTCCACTGGCGCCGGGGGAACGACGGA
CTCCGTTTGCTCCGTTTGGGCGACAGAATCAGCAAGCCTTGCTGGCTCAG
AACACTTTGCAATCGCCCGCAATGTCGTTGAGCGTTTCTGCATCCGTGGG
GTTTCTCGTCAGGCTGTTTATAAATGTTTTGTTTGTATTTGCATACAGAG
TCGGCGACACCGTGACACACGTCTAAGGGATGCAGGAGAAGTTCCCCAGG
ACGATGGTGGCATCCTCTTCACCATTAACAGTGAAAGATGGGCCAGGAGA
GGAGCAGGGCAGCTGTAGCAGCAGTCACTCCGCAATAACAGCAGAAGCGG
CACGCAGTGAGTATCACTGCCGAGAGTCTTTTCCGACTCGGAGAAAGGAG
ATGTGCAGTTGGGTGTCTTAGGATTACATCAGTCCCGGGTACGGATTGCG
CAAGTGAGCCAGCTGTAAGGAGTGGTTCAGTTTGTTTTAGCGTTTTTTTT
CCATTTTAAGTTTTTATTATGATTATGTTCGNAGTGAGCCAGCTGTAAGG
AGTGGTTCAGTTTGTTTTAGCGTTTTTTCCATTTTAAGTTTTTATTATGC
TTATGTTGGTGACAATTGTTTAATTTGGTGCTGTTTTTTAATGTTTTGCA
TCATGGTTTCATTGTGTGTACTATGTGTTATTGTATTTTGGAAAACAGTG
CTTGTACGGACTCCCGGTCGTTCGCGCTTTGTGTCACTGTTAGTGTGTGA
ATTTCAAGTTGCGTGGACCGGAGAGTTTCTGGTTATGGCGTGTTTTCATT
TGTGATGAAACGGCGCGCATGTGCGAACTTCTGATCGTTCGGGCTTGGTG
TTTGCTAGCACTCTTAGTGTGCGAGCACCGGGTAGCGTTGGTCAGTCGTT
CGCGTATGGCTGGTGTTTCATATTGTGGGAAACGGCGCGCATGTGCGGAC
TTCTGATCGTTCGGGCTTGGTGTTTGCTAGCACTCTTAGTGTGCGA Coding sequence (CDS) from alignment at Sc0000049:1781960..1784105- >transcript:BL79147_cuf2 ID=transcript:BL79147_cuf2|Name=transcript:BL79147_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=660bp|location=Sequence derived from alignment at Sc0000049:1781960..1784105- (Branchiostoma lanceolatum)
ATGGTCCAGACAGGAGATACCGAAGAGTATGCAGTGGGTGCAGCGGACGC
CGCCGCCGGCTTCCTCGGCTACGTTGACGCTGCTGCGGTGGGCGCCATCG
GCACCACAGGGGATGCGGTTTTCACTGGCACTGGTGCCGAGGGAGCGAAG
GATTCCGTCCACTCCGTTAGAGCGTGGAGATTACGGCAAGTTACAGTATG
GCCACCGAAAGCCGAGCCGTCCAGACAAAGGACACAGAGTGCAGTGGATG
CCGCGGACGCCGCCTCCAGCTGCCTTGGCTACACTGACGCTGTTGCAGCG
GGCCTCACCAGGACCAGGGACAGGGGTTGAATGGTCCAGACAGGAGATAC
CGAAGAGTATGCAGTGGGTGCAGCGGACGCCGCCGCCGGCTTCCTCGGCT
ACGTTGACGCTGCTGCGGTGGGCGCCATCGGCACCACAGGGGATGCGGTT
TTCACTGGCACTGGTGCCGAGGGAGCGAAGGATTCCGTCCACTCCGTTAG
AGCGTGGAGATTACGGCAAGTTACAGTATGGCCACCGAAAGCCGAGCCGT
CCAGACAAAGGACACAGAGTGCAGTGGATGCCGCGGACGCCGCCTCCAGC
TGCCTTGGCTACACTGACGCTGTTGCAGCGGGCCTCACCAGGACCAGGGA
CAGGGGTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000049 | genome | Sc0000049:1781960..1784105 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL79147_cuf2 |
| Biotype | protein_coding |
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