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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL77564_cuf2 >transcript:BL77564_cuf2-protein ID=transcript:BL77564_cuf2-protein|Name=transcript:BL77564_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=588bp
MSKPSVSTTGKPYKCDQCDYSTLKKYSLDKHVKTHTAEKPYICDQCGYRA
AKKYYLLKHLRTHTSERPYKCDQCDYAAAHTKALKDHVLRHSVEKPYVCD
ECGYKTAVRSDLSSHMKRHSGEKPYKCDQCDYSAVLNSDIHKHFRLRHSS
EKPYVCDECGHRTATKSQQTQHMKTHTGEKPHKCDQCDYSAATKAHLDKH
VARKHTDEKPFLCEECGYRTAVKSDLAVHRRKHTGEKLHKCDQCDYSTAR
KSDMDRHIIQKHKGEKTYVCVLCDYSTGIKPYLSRHMKIHSSDKPYKCDQ
CDYSAALKDSLKKHVLTKHTDGACIANMCNLSVISQAVRQYKCDQCDYST
SKKYSLVEHAKRHTGEKPYMCECCGYRTVQRCQLLRHQRTHTGERPYKCD
QCDYAAAQSNALNAHKLRHAIEKPYVCEECGYKTAVKRDLAIHMRRHIGM
KPYKCHQCDYSAVQKHDVQKHIMSQHTGEKPYVCGECGHRTATKSQQNCH
MKTHTGEKPHKCDQCDYSAAQKAHLDKHILRRHTSEKSFLCEECGFRTAV
KSDLALHRKTHTGEKVHKCDQCDYSTSRKCDLDRHLIV Run BLAST on NCBI mRNA from alignment at Sc0000050:1628738..1631052+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL77564_cuf2 ID=transcript:BL77564_cuf2|Name=transcript:BL77564_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2315bp|location=Sequence derived from alignment at Sc0000050:1628738..1631052+ (Branchiostoma lanceolatum)
CACATTTTGGAAGATTCTGTTGAATTTAAACATGATAAGCCGATAGGTAA
GAATGTAATTCACTGTTCACGCCTTCTAGATCATGCTAATACAGTGCAAG
GAGGTTATATAACCTTGTAACGTTACAGTGCAGTGCTAACACAATTTCAA
AACCATGGTGTTTTGAAAAATGTTGCTTGTTGTTGTATGAAGACAGTGAC
GTTACTGATACTAGTATTGGGATCATCATGTTTTTCTCTTTTTATCTTGT
AAGGAAGAAGAAGAAAACTATTCCCCACTAGAGCCAGCACCTATTGGATG
TCCTGGGAACAAGACAACAAGATAAACAGCTCAGAGTCAGAGCTTCCAAC
AACAGATTCGGGAAGACAGCAGGACAGAAGAAAGGACGGTTTCAATTTTT
TAAGTCATGCCCAGAAAGCCTAAACATATCTGCTTGTTCATCATCATGCC
CATACAAGATATGTGGATGTGGCATAACAAACTATAAACGCAGGCATGTG
AGAACTGTACTATCAAGAATTAGGAGAAAACACACACAGTACAGCCAATA
TGTCCAAGCCATCTGTAAGTACAACTGGAAAACCATACAAATGTGACCAG
TGTGATTATTCCACACTAAAGAAGTATAGCTTAGACAAACATGTGAAGAC
GCACACCGCAGAGAAACCCTACATATGTGATCAATGTGGATACAGAGCAG
CCAAGAAGTATTACCTTTTGAAACATCTGAGAACGCACACCAGTGAGAGA
CCCTACAAATGTGACCAGTGTGACTATGCTGCTGCACACACAAAAGCCTT
AAAGGACCACGTGTTGAGACATTCTGTTGAGAAGCCATATGTGTGTGATG
AGTGTGGATACAAGACAGCCGTTAGGAGTGACCTGTCATCACACATGAAG
AGGCACAGTGGTGAGAAGCCCTACAAATGTGACCAGTGTGACTATTCTGC
TGTACTCAACTCAGATATACACAAACACTTCAGACTTAGACACTCGAGTG
AGAAACCCTACGTTTGTGACGAATGCGGACATAGGACAGCTACAAAATCT
CAACAAACCCAACACATGAAAACACATACTGGTGAAAAACCACACAAATG
TGACCAGTGTGACTATTCTGCTGCAACGAAAGCCCACCTGGACAAACATG
TTGCAAGGAAACACACTGATGAGAAACCCTTCCTATGTGAGGAGTGTGGA
TACAGGACGGCTGTTAAGTCCGACTTGGCCGTACATAGAAGAAAACACAC
AGGAGAGAAACTCCACAAATGTGACCAATGTGACTATTCTACTGCACGGA
AAAGTGATATGGATCGACACATCATACAAAAACACAAGGGCGAGAAAACC
TATGTGTGTGTGTTGTGTGACTACAGTACAGGTATAAAACCTTACCTATC
CCGACACATGAAAATACACAGCAGTGACAAACCTTACAAATGTGACCAGT
GTGACTATTCTGCTGCACTGAAAGACAGTCTGAAGAAGCATGTCTTGACC
AAACACACTGATGGTGCATGTATAGCCAATATGTGTAACCTATCTGTAAT
AAGTCAAGCTGTAAGACAGTACAAGTGTGACCAGTGTGATTATTCTACAT
CAAAGAAGTACAGCTTAGTCGAACATGCAAAAAGACACACTGGAGAAAAA
CCCTACATGTGTGAGTGCTGTGGATACAGAACCGTCCAGAGGTGTCAGTT
ACTGAGACATCAGAGAACTCACACCGGTGAGAGACCCTACAAATGTGACC
AGTGTGACTATGCTGCTGCACAGTCAAATGCCTTAAATGCACACAAGTTG
AGACATGCCATAGAGAAGCCCTATGTGTGTGAGGAGTGCGGTTACAAGAC
AGCTGTTAAGAGAGACCTGGCTATACATATGAGAAGGCACATTGGTATGA
AACCCTACAAATGCCATCAATGCGACTATTCTGCTGTACAGAAACATGAT
GTGCAAAAACACATCATGTCCCAACACACGGGTGAGAAACCCTACGTCTG
TGGGGAATGTGGACATAGAACAGCTACAAAATCTCAACAAAACTGTCACA
TGAAAACACATACGGGTGAAAAACCACACAAATGTGACCAGTGTGACTAT
TCTGCTGCACAAAAAGCCCACCTGGACAAACATATCTTGAGGAGACACAC
CAGTGAGAAATCCTTCCTATGTGAGGAGTGCGGCTTCAGGACAGCTGTTA
AGTCCGACTTAGCCCTACATAGGAAAACACACACTGGAGAGAAAGTCCAC
AAATGTGACCAATGTGACTATTCTACTTCACGTAAATGCGATTTAGACAG
ACACTTAATAGTNNN Coding sequence (CDS) from alignment at Sc0000050:1628738..1631052+ >transcript:BL77564_cuf2 ID=transcript:BL77564_cuf2|Name=transcript:BL77564_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1764bp|location=Sequence derived from alignment at Sc0000050:1628738..1631052+ (Branchiostoma lanceolatum)
ATGTCCAAGCCATCTGTAAGTACAACTGGAAAACCATACAAATGTGACCA
GTGTGATTATTCCACACTAAAGAAGTATAGCTTAGACAAACATGTGAAGA
CGCACACCGCAGAGAAACCCTACATATGTGATCAATGTGGATACAGAGCA
GCCAAGAAGTATTACCTTTTGAAACATCTGAGAACGCACACCAGTGAGAG
ACCCTACAAATGTGACCAGTGTGACTATGCTGCTGCACACACAAAAGCCT
TAAAGGACCACGTGTTGAGACATTCTGTTGAGAAGCCATATGTGTGTGAT
GAGTGTGGATACAAGACAGCCGTTAGGAGTGACCTGTCATCACACATGAA
GAGGCACAGTGGTGAGAAGCCCTACAAATGTGACCAGTGTGACTATTCTG
CTGTACTCAACTCAGATATACACAAACACTTCAGACTTAGACACTCGAGT
GAGAAACCCTACGTTTGTGACGAATGCGGACATAGGACAGCTACAAAATC
TCAACAAACCCAACACATGAAAACACATACTGGTGAAAAACCACACAAAT
GTGACCAGTGTGACTATTCTGCTGCAACGAAAGCCCACCTGGACAAACAT
GTTGCAAGGAAACACACTGATGAGAAACCCTTCCTATGTGAGGAGTGTGG
ATACAGGACGGCTGTTAAGTCCGACTTGGCCGTACATAGAAGAAAACACA
CAGGAGAGAAACTCCACAAATGTGACCAATGTGACTATTCTACTGCACGG
AAAAGTGATATGGATCGACACATCATACAAAAACACAAGGGCGAGAAAAC
CTATGTGTGTGTGTTGTGTGACTACAGTACAGGTATAAAACCTTACCTAT
CCCGACACATGAAAATACACAGCAGTGACAAACCTTACAAATGTGACCAG
TGTGACTATTCTGCTGCACTGAAAGACAGTCTGAAGAAGCATGTCTTGAC
CAAACACACTGATGGTGCATGTATAGCCAATATGTGTAACCTATCTGTAA
TAAGTCAAGCTGTAAGACAGTACAAGTGTGACCAGTGTGATTATTCTACA
TCAAAGAAGTACAGCTTAGTCGAACATGCAAAAAGACACACTGGAGAAAA
ACCCTACATGTGTGAGTGCTGTGGATACAGAACCGTCCAGAGGTGTCAGT
TACTGAGACATCAGAGAACTCACACCGGTGAGAGACCCTACAAATGTGAC
CAGTGTGACTATGCTGCTGCACAGTCAAATGCCTTAAATGCACACAAGTT
GAGACATGCCATAGAGAAGCCCTATGTGTGTGAGGAGTGCGGTTACAAGA
CAGCTGTTAAGAGAGACCTGGCTATACATATGAGAAGGCACATTGGTATG
AAACCCTACAAATGCCATCAATGCGACTATTCTGCTGTACAGAAACATGA
TGTGCAAAAACACATCATGTCCCAACACACGGGTGAGAAACCCTACGTCT
GTGGGGAATGTGGACATAGAACAGCTACAAAATCTCAACAAAACTGTCAC
ATGAAAACACATACGGGTGAAAAACCACACAAATGTGACCAGTGTGACTA
TTCTGCTGCACAAAAAGCCCACCTGGACAAACATATCTTGAGGAGACACA
CCAGTGAGAAATCCTTCCTATGTGAGGAGTGCGGCTTCAGGACAGCTGTT
AAGTCCGACTTAGCCCTACATAGGAAAACACACACTGGAGAGAAAGTCCA
CAAATGTGACCAATGTGACTATTCTACTTCACGTAAATGCGATTTAGACA
GACACTTAATAGTN
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000050 | genome | Sc0000050:1628738..1631052 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL77564_cuf2 |
| Biotype | protein_coding |
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