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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82515_cuf0 >transcript:BL82515_cuf0-protein ID=transcript:BL82515_cuf0-protein|Name=transcript:BL82515_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=220bp
MPLGEFPIPKRGVFSGCQVTLELTGVTLPYKEKKRLRELITQNDGIISYI
INKKTSFLVLGSKERTDSYKCRTAVKLGLPVVPLDYIEACVQSEELLDTD
NFLLVGKSVAAEFSTGKIAAPRNLKQEEVKKVTVDIKKIKVWKEGENGPD
GAFKHVNSGDHLLVDGSFEVAKYVFLQKDNAKVSKKGPAAPVVQVLELQV
ASDEPDNSKGEFKYRVMTQV Run BLAST on NCBI mRNA from alignment at Sc0000025:1572620..1576927+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82515_cuf0 ID=transcript:BL82515_cuf0|Name=transcript:BL82515_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=4308bp|location=Sequence derived from alignment at Sc0000025:1572620..1576927+ (Branchiostoma lanceolatum)
GTTGACGATGAGGTCACAGCTGAAAGGGGAAGTTTGGAACAAGTGACGTT
CTGCATTCTTCTAGCTGCGTTGTCATTTTTATCTACGTGCATGTACGGAC
CTGCAGATGCCCTTAGGAGAGTTCCCGATCCCAAAGGTACGTAGCATGTT
TTTTACCGGTAGGTTTTCATTCTGCAACCTCTTTAATTAATACCAGATGC
ATACTCAGATGTGCTTCTCAGACTACATATTTTATGTTTGAGAATTATGC
AAAATTAAGAGTTGTTGGACTACACTTTAACATGCTATGATACAGAGGAG
GGGAGGGCTGAAGGCTGACCACATGTTACCTACAGGNGAGGGGAGGGCTG
AAGGCTGACTACATGTTACCTACAGGTAAGCCAGGATCATAGCGTTAAAT
GTTACAGAAGATCGTTCTTAAATTCCAAATTTTCACTTTACTTCCGGGTT
GGGTGTTTACAACATTGTAACGTTATAACCTATACATGTACATGTATTTA
GACAGGTCTAAGGGAAAATGATTCCGAGACTTGATTCATTTTCATGTTAT
TATAAGTCTTATAAATAATTCAAAGGTTTCTGTATTCTATTGAAGGTATT
GCAGGCACTAACAATCTTTAATGTTTTATACACACATGTAGATAAAAAAT
ACAGTGACTGTATCCCTGTAACGTTAAACATAATGTGTGTTACTGTGTGT
GTCGTCGAAATGCATTTTGGTACCTGCAATATCATAAAATTGTCCGAAAT
TCTAGCTTCACTTAAGAAAAACTGCAAAAAAAAACAAGATGTTTGCTTTT
ACAACCTTAGCCAGTGTGACAGTGTCAGTGATGAAGTTTCTATATGTATG
TGCATATTGTCAGTCTAAGATTCTTAAAAACAACAAAGATGATATACAGA
CATTTACATATAATACAAACAATGCGTATCAAGTAGTGTGAAAACGTGTG
GGCGGAAGGACCAGTCGACAATAGTAAGGCCGAATGCCGGATCTGAAAAG
AGACCTCGGAATGGCATAGGACATATGTAGCAGGTGANCTCGGAATGGCA
TAGGACATAAGTAGCAGGTGAATTATGCTGTTTTCAGACACAAAGAGGCG
GGTCACAAAGGAGTGTGCCAGCTTACGCCGCCTGGCGTAGAAGGTATCAA
CCCGTCCTTTGCTGGGACATAAACATTTCAAAAGCACTTGAATGAAGGTT
AAACACTGCTGTCTTTTCCACAGAGGGGCGTGTTCAGTGGTTGCCAGGTA
ACCCTGGAGCTGACAGGTGTGACACTTCCATATAAGGAGAAGAAGAGGCT
GAGGGAACTCATCACTCAGAACGACGGCATCATCTCTTACATCATCAACA
AAAAGGTCAGAGTTCAAATTTTTAACTGTTAGGCCATGTTGATTTGATGA
TATGAATGACATCCACGCGTGCATCAAGTTCTTTTGCCCGTTTCCAAAAT
GTTTTTGGCCATACGTGTAAATCATACAAAGCAGAGCTCTGCAAAATGAG
AAAATATGTGCTGTATATTTAAAAGAAAAATTTCGGATAACAGATACTTA
TGTCGTAGAATGCCAGGGTCACCTCCAAAGTCAAAGAAGAAGAAGGAGCA
GGAAGTAGGTTTGGAGGTTTTGGAATCAGTTGTTTATCAGATATGACAGA
CATTCCAGGTCATAGGGTCAATGGAAGAGGCTACTACTTCTCGGGGAGGT
ATTGGAGCTTAAGTTTAAAATTGTTCTTGTATTGTAATCCTCAAAGAAGT
TGTGAGACAAAAAAAAATAACTGTCTATTTTAGAAATAGATCATGCTGTC
TTTTATATCTTAAGCTATCAAACAGTATAAAAATTACAAATTATATTCAC
ATTTCCAGACTTCTTTTCTCGTACTTGGGAGTAAAGAAAGGACGGACAGC
TACAAATGCAGGACCGCGGTGAAACTCGGCCTGCCCGTGGTCCCGCTGGA
CTACATCGAGGCCTGCGTACAGTCAGAGGAGCTGCTCGACACAGACAACT
TCCTATTAGTCGGGAAGAGCGTCGCTGCCGAGTTTTCTACGGGCAAAATT
GCAGGTATAGCATTTATCTATAACCTCAAACTGCCATTGGCTGATAAACT
TAGGAAGAGGAAAGAAGTTGAAAAGTTTGACTGTTTTAAATTGCTTATGA
CACCAAAATACAACACAACTATATCAAATAATTGATACAGTTAATAGCAT
TATTCAATGAACATAGACTTTTGCACCAAATGCACACCCTTCTAGTGTTA
CTGAACATCACTTCTTACAAATCACACTTCCAGTTCTTGATTCCTGCAGC
CAGGTAATCAAGGTAATTTCCGCTCATGTAAACAGTCGGCAGTTGGTTTG
GAACCTAGTACTGCGACTCACAAAAAAAAATTCCTTTGAGAAGGAAACAG
TGCATGATCATCATAAATCACATACCATCCCAAGTTTCCATTTTTGTTTG
CTTTTCTGCTTCTCTCAAGAACGTCTTTCGCGAGTCACAGTAACAAGTTC
CCAACCGACTGCTATATATGTTTACCATGACATCATGAGCAAAAATCAAC
TTGATTTTACTGAAAAATGTAATAACTCGAATCAGGATCTCAAATGGTAG
GATCCCTTGTACTGGGTGAGATCCTGATCACGATTAGCCCTAGTGCCAGC
CTTTTTAGCTTCCGTCTGCTACGCTAGCTCCGCTGCGCTACCCAAGCTCC
GAGGAGCGGAGCTTGGGTAGCGTACGGAAGCTAAAAATGCTGGCACTCAG
GCTAGATCACGATCTCTGTCAACAGTGAATCAAAGAGGCGAGTAGAACAG
ACTCCTGGCTGCCGAGGATCAGACCCAGGCCTGCCAGTCCACAGGCCGCA
CGCCTCAACCACTAGGCTAAAAGGTCTAGACCAGTTAGACTCTGATGTTA
TTGGTCAGTTGGAGGCACTTGAACCCCACTGTTACAACAGAGATTGATGG
CAATCTCTATTGGCAGAGTCTGCAATTTTGCCAGATTGGAATCAGCCCCT
CGGCAGAGTCTGCAATTTTGCCAGATTGGAATCAGCACCTCGACATATTT
ATTGGTTTATTGGTTTGTAAGTTTTAGATAACAGTTAATAAATAATTTAT
TAACATGTGCTTCCAGCCCCGAGAAACTTGAAGCAGGAAGAAGTTAAGAA
GGTGACAGTAGACATCAAAAAGATCAAGTAAGGCTTCATATTTCCACCAA
TCAGATTCTTTTAATTGATGAATGTAATCAATGAAGCAGGAAACCTGAAT
AAAAGTTTTAAAAAGCAGTGCCACGGATGCAAATTGGGATGTTTTGGCTA
ATTTCTGCTTTTGATTGAAAGAAAATGAGAAAATCTGACACCAAGCTTAA
TTTTTCAACTAATCAATCCGAGGAATAGAAAGTTTAGCCAATTTTTTTCA
TAATGATACTATTCATTATACTTATATACTATATTCTTTTAGCCACATAA
ACTCTGAATGATGATAGGCTTGCAATAAAATTAGTTTTCTTGTAAGAAAT
GCAAATGAACTTTGAAATTTATTCATCATGTTTTACTTTTCTAAAGGGTG
TGGAAAGAAGGAGAAAATGGTCCAGATGGAGCTTTTAAACATGTTAACTC
CGGAGATCATCTACTTGTAGACGGAAGCTTTGAGGTGGCTAAGTATGTCT
TCTTACAGGTGAGTCAAGACTTTAAATATAAGTTCCAGGTAAGGTTATAC
TTTCTTACTTTGTATTTGACTGTTTTGAAACTTTTAGCTTTATGCTTCTA
TATGTATTGTACAGTACTTCTAGGTGTATTGTACGGTTTTATATGTAGTG
TTAAAGAAGTCTAACCTATCATGTTCATGTCTAACCAATTTATATTTCAA
GTTGGGTAAAGTCTTGTTGCACATACTATAAATTCTTCTAATTTTGCGAT
GTTTTCATTTCGTGGTAGGGAAAAAAGGAGGTTTTCAACAATTTTGTAGT
GTAGTGGAAAATGATACATTGAAATATTCCTGGTGTTATGAATTTGCAGT
GGAAAGGTGACTGTAAAAACTGCAAAAAAAAAAAAAAAAAATCGCAAAAG
TTTAAAGATTTACAGTATCATTGTCAACTTTGTCTAAAGTTTGTTACTTG
TTATTAGTCTTCAGGCAAGGGTTTCAAAGATTGCATTTTTAAACTCAGTC
TAAAAAAAATCTCTGTTATTCCCAAGCAGAAAGATAACGCTAAGGTCTCT
AAGAAGGGCCCAGCTGCACCTGTTGTGCAGGTGTTGGAGCTCCAGGTGGC
CTCAGATGAACCTGATAACTCAAAAGGGGAGTTTAAATACAGAGTCATGA
CACAGGTG Coding sequence (CDS) from alignment at Sc0000025:1572620..1576927+ >transcript:BL82515_cuf0 ID=transcript:BL82515_cuf0|Name=transcript:BL82515_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=3960bp|location=Sequence derived from alignment at Sc0000025:1572620..1576927+ (Branchiostoma lanceolatum)
ATGCCCTTAGGAGAGTTCCCGATCCCAAAGAGGGGCGTGTTCAGTGGTTG
CCAGGTAACCCTGGAGCTGACAGGTGTGACACTTCCATATAAGGAGAAGA
AGAGGCTGAGGGAACTCATCACTCAGAACGACGGCATCATCTCTTACATC
ATCAACAAAAAGACTTCTTTTCTCGTACTTGGGAGTAAAGAAAGGACGGA
CAGCTACAAATGCAGGACCGCGGTGAAACTCGGCCTGCCCGTGGTCCCGC
TGGACTACATCGAGGCCTGCGTACAGTCAGAGGAGCTGCTCGACACAGAC
AACTTCCTATTAGTCGGGAAGAGCGTCGCTGCCGAGTTTTCTACGGGCAA
AATTGCAGCCCCGAGAAACTTGAAGCAGGAAGAAGTTAAGAAGGTGACAG
TAGACATCAAAAAGATCAAGGTGTGGAAAGAAGGAGAAAATGGTCCAGAT
GGAGCTTTTAAACATGTTAACTCCGGAGATCATCTACTTGTAGACGGAAG
CTTTGAGGTGGCTAAGTATGTCTTCTTACAGAAAGATAACGCTAAGGTCT
CTAAGAAGGGCCCAGCTGCACCTGTTGTGCAGGTGTTGGAGCTCCAGGTG
GCCTCAGATGAACCTGATAACTCAAAAGGGGAGTTTAAATACAGAGTCAT
GACACAGGTGATGCCCTTAGGAGAGTTCCCGATCCCAAAGAGGGGCGTGT
TCAGTGGTTGCCAGGTAACCCTGGAGCTGACAGGTGTGACACTTCCATAT
AAGGAGAAGAAGAGGCTGAGGGAACTCATCACTCAGAACGACGGCATCAT
CTCTTACATCATCAACAAAAAGACTTCTTTTCTCGTACTTGGGAGTAAAG
AAAGGACGGACAGCTACAAATGCAGGACCGCGGTGAAACTCGGCCTGCCC
GTGGTCCCGCTGGACTACATCGAGGCCTGCGTACAGTCAGAGGAGCTGCT
CGACACAGACAACTTCCTATTAGTCGGGAAGAGCGTCGCTGCCGAGTTTT
CTACGGGCAAAATTGCAGCCCCGAGAAACTTGAAGCAGGAAGAAGTTAAG
AAGGTGACAGTAGACATCAAAAAGATCAAGGTGTGGAAAGAAGGAGAAAA
TGGTCCAGATGGAGCTTTTAAACATGTTAACTCCGGAGATCATCTACTTG
TAGACGGAAGCTTTGAGGTGGCTAAGTATGTCTTCTTACAGAAAGATAAC
GCTAAGGTCTCTAAGAAGGGCCCAGCTGCACCTGTTGTGCAGGTGTTGGA
GCTCCAGGTGGCCTCAGATGAACCTGATAACTCAAAAGGGGAGTTTAAAT
ACAGAGTCATGACACAGGTGATGCCCTTAGGAGAGTTCCCGATCCCAAAG
AGGGGCGTGTTCAGTGGTTGCCAGGTAACCCTGGAGCTGACAGGTGTGAC
ACTTCCATATAAGGAGAAGAAGAGGCTGAGGGAACTCATCACTCAGAACG
ACGGCATCATCTCTTACATCATCAACAAAAAGACTTCTTTTCTCGTACTT
GGGAGTAAAGAAAGGACGGACAGCTACAAATGCAGGACCGCGGTGAAACT
CGGCCTGCCCGTGGTCCCGCTGGACTACATCGAGGCCTGCGTACAGTCAG
AGGAGCTGCTCGACACAGACAACTTCCTATTAGTCGGGAAGAGCGTCGCT
GCCGAGTTTTCTACGGGCAAAATTGCAGCCCCGAGAAACTTGAAGCAGGA
AGAAGTTAAGAAGGTGACAGTAGACATCAAAAAGATCAAGGTGTGGAAAG
AAGGAGAAAATGGTCCAGATGGAGCTTTTAAACATGTTAACTCCGGAGAT
CATCTACTTGTAGACGGAAGCTTTGAGGTGGCTAAGTATGTCTTCTTACA
GAAAGATAACGCTAAGGTCTCTAAGAAGGGCCCAGCTGCACCTGTTGTGC
AGGTGTTGGAGCTCCAGGTGGCCTCAGATGAACCTGATAACTCAAAAGGG
GAGTTTAAATACAGAGTCATGACACAGGTGATGCCCTTAGGAGAGTTCCC
GATCCCAAAGAGGGGCGTGTTCAGTGGTTGCCAGGTAACCCTGGAGCTGA
CAGGTGTGACACTTCCATATAAGGAGAAGAAGAGGCTGAGGGAACTCATC
ACTCAGAACGACGGCATCATCTCTTACATCATCAACAAAAAGACTTCTTT
TCTCGTACTTGGGAGTAAAGAAAGGACGGACAGCTACAAATGCAGGACCG
CGGTGAAACTCGGCCTGCCCGTGGTCCCGCTGGACTACATCGAGGCCTGC
GTACAGTCAGAGGAGCTGCTCGACACAGACAACTTCCTATTAGTCGGGAA
GAGCGTCGCTGCCGAGTTTTCTACGGGCAAAATTGCAGCCCCGAGAAACT
TGAAGCAGGAAGAAGTTAAGAAGGTGACAGTAGACATCAAAAAGATCAAG
GTGTGGAAAGAAGGAGAAAATGGTCCAGATGGAGCTTTTAAACATGTTAA
CTCCGGAGATCATCTACTTGTAGACGGAAGCTTTGAGGTGGCTAAGTATG
TCTTCTTACAGAAAGATAACGCTAAGGTCTCTAAGAAGGGCCCAGCTGCA
CCTGTTGTGCAGGTGTTGGAGCTCCAGGTGGCCTCAGATGAACCTGATAA
CTCAAAAGGGGAGTTTAAATACAGAGTCATGACACAGGTGATGCCCTTAG
GAGAGTTCCCGATCCCAAAGAGGGGCGTGTTCAGTGGTTGCCAGGTAACC
CTGGAGCTGACAGGTGTGACACTTCCATATAAGGAGAAGAAGAGGCTGAG
GGAACTCATCACTCAGAACGACGGCATCATCTCTTACATCATCAACAAAA
AGACTTCTTTTCTCGTACTTGGGAGTAAAGAAAGGACGGACAGCTACAAA
TGCAGGACCGCGGTGAAACTCGGCCTGCCCGTGGTCCCGCTGGACTACAT
CGAGGCCTGCGTACAGTCAGAGGAGCTGCTCGACACAGACAACTTCCTAT
TAGTCGGGAAGAGCGTCGCTGCCGAGTTTTCTACGGGCAAAATTGCAGCC
CCGAGAAACTTGAAGCAGGAAGAAGTTAAGAAGGTGACAGTAGACATCAA
AAAGATCAAGGTGTGGAAAGAAGGAGAAAATGGTCCAGATGGAGCTTTTA
AACATGTTAACTCCGGAGATCATCTACTTGTAGACGGAAGCTTTGAGGTG
GCTAAGTATGTCTTCTTACAGAAAGATAACGCTAAGGTCTCTAAGAAGGG
CCCAGCTGCACCTGTTGTGCAGGTGTTGGAGCTCCAGGTGGCCTCAGATG
AACCTGATAACTCAAAAGGGGAGTTTAAATACAGAGTCATGACACAGGTG
ATGCCCTTAGGAGAGTTCCCGATCCCAAAGAGGGGCGTGTTCAGTGGTTG
CCAGGTAACCCTGGAGCTGACAGGTGTGACACTTCCATATAAGGAGAAGA
AGAGGCTGAGGGAACTCATCACTCAGAACGACGGCATCATCTCTTACATC
ATCAACAAAAAGACTTCTTTTCTCGTACTTGGGAGTAAAGAAAGGACGGA
CAGCTACAAATGCAGGACCGCGGTGAAACTCGGCCTGCCCGTGGTCCCGC
TGGACTACATCGAGGCCTGCGTACAGTCAGAGGAGCTGCTCGACACAGAC
AACTTCCTATTAGTCGGGAAGAGCGTCGCTGCCGAGTTTTCTACGGGCAA
AATTGCAGCCCCGAGAAACTTGAAGCAGGAAGAAGTTAAGAAGGTGACAG
TAGACATCAAAAAGATCAAGGTGTGGAAAGAAGGAGAAAATGGTCCAGAT
GGAGCTTTTAAACATGTTAACTCCGGAGATCATCTACTTGTAGACGGAAG
CTTTGAGGTGGCTAAGTATGTCTTCTTACAGAAAGATAACGCTAAGGTCT
CTAAGAAGGGCCCAGCTGCACCTGTTGTGCAGGTGTTGGAGCTCCAGGTG
GCCTCAGATGAACCTGATAACTCAAAAGGGGAGTTTAAATACAGAGTCAT
GACACAGGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000025 | genome | Sc0000025:1572620..1576927 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82515_cuf0 |
| Biotype | protein_coding |
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