transcript:BL70131_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL70131_cuf0
Unique Nametranscript:BL70131_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL70131_cuf0

>transcript:BL70131_cuf0-protein ID=transcript:BL70131_cuf0-protein|Name=transcript:BL70131_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=208bp
MSSNNVDVMTVSETHLDSTILDSELHIEGYHLYRNDANRHGGGVAIYVSE
AYSHTEVPELKQPGLEAVFCTVNIPFTKPITIASVYRPPSSPVEFFSLLR
DALEKWSLTMSDSELFLLGDFNVDINSHSSPGAKSLKYLSREFQLQQVIN
TPTRVNEHSSSLIDHIYCSDIHRVNDYGVVHCTLSDHYAVYCIRKGKRPN
SAPKYVTS
Run BLAST on NCBI

mRNA from alignment at Sc0000269:306560..307280-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL70131_cuf0 ID=transcript:BL70131_cuf0|Name=transcript:BL70131_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=721bp|location=Sequence derived from alignment at Sc0000269:306560..307280- (Branchiostoma lanceolatum)
TAAAGTACTACTAAGATACCACCATCAAAGGGCCTAACCATTGTACACCT
CAATATCTGTAGTTTGTATAGCAAGTTGGACCAATTGCATGTATTTATGT
CTTCCAACAATGTTGATGTTATGACGGTTAGTGAAACCCACCTGGACAGT
ACGATCCTGGACTCAGAGCTACACATAGAGGGCTATCACCTGTACAGAAA
TGACGCAAACAGACACGGGGGTGGGGTAGCCATATATGTGTCAGAGGCGT
ACAGCCATACAGAAGTACCTGAGCTAAAACAGCCTGGCCTGGAGGCAGTT
TTCTGCACAGTAAACATACCTTTCACTAAACCCATCACCATTGCTTCTGT
GTACAGACCACCATCAAGCCCTGTAGAGTTTTTCTCCCTGTTGAGGGATG
CTCTTGAGAAATGGAGTCTGACCATGTCAGACTCCGAACTGTTTCTACTG
GGCGACTTCAATGTTGACATTAACTCACACAGTAGTCCAGGTGCTAAGTC
TCTAAAATACCTAAGCCGTGAGTTCCAACTACAGCAGGTGATAAATACAC
CAACTCGAGTAAACGAACATTCGAGTAGTCTGATTGACCATATCTACTGT
AGTGACATACACCGAGTTAATGACTATGGTGTAGTTCATTGTACGCTTTC
TGATCACTACGCAGTGTATTGTATTAGAAAGGGTAAACGTCCAAACTCAG
CCCCTAAGTATGTAACCTCAC

Coding sequence (CDS) from alignment at Sc0000269:306560..307280-

>transcript:BL70131_cuf0 ID=transcript:BL70131_cuf0|Name=transcript:BL70131_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=624bp|location=Sequence derived from alignment at Sc0000269:306560..307280- (Branchiostoma lanceolatum)
ATGTCTTCCAACAATGTTGATGTTATGACGGTTAGTGAAACCCACCTGGA
CAGTACGATCCTGGACTCAGAGCTACACATAGAGGGCTATCACCTGTACA
GAAATGACGCAAACAGACACGGGGGTGGGGTAGCCATATATGTGTCAGAG
GCGTACAGCCATACAGAAGTACCTGAGCTAAAACAGCCTGGCCTGGAGGC
AGTTTTCTGCACAGTAAACATACCTTTCACTAAACCCATCACCATTGCTT
CTGTGTACAGACCACCATCAAGCCCTGTAGAGTTTTTCTCCCTGTTGAGG
GATGCTCTTGAGAAATGGAGTCTGACCATGTCAGACTCCGAACTGTTTCT
ACTGGGCGACTTCAATGTTGACATTAACTCACACAGTAGTCCAGGTGCTA
AGTCTCTAAAATACCTAAGCCGTGAGTTCCAACTACAGCAGGTGATAAAT
ACACCAACTCGAGTAAACGAACATTCGAGTAGTCTGATTGACCATATCTA
CTGTAGTGACATACACCGAGTTAATGACTATGGTGTAGTTCATTGTACGC
TTTCTGATCACTACGCAGTGTATTGTATTAGAAAGGGTAAACGTCCAAAC
TCAGCCCCTAAGTATGTAACCTCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL70131gene:BL70131Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL70131_cuf0-E1BL70131_cuf0-E1-1564476830-416447Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL70131_cuf0transcript:BL70131_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000269genomeSc0000269:306560..307280 -
Properties
Property NameValue
Transcript idBL70131_cuf0
Biotypeprotein_coding