|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL89785_cuf0 >transcript:BL89785_cuf0-protein ID=transcript:BL89785_cuf0-protein|Name=transcript:BL89785_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=101bp
MASVEFLNNGCSLGGVISAARALSTPRKVRINALSHLGDERPMKTKMAAG
WPKIVSDSRKISMRKSEKMHLLAALGKTISIILPLIIKRVNCTFVEGNIQ
P Run BLAST on NCBI mRNA from alignment at Sc0000318:5390..9356+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL89785_cuf0 ID=transcript:BL89785_cuf0|Name=transcript:BL89785_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3967bp|location=Sequence derived from alignment at Sc0000318:5390..9356+ (Branchiostoma lanceolatum)
AACAGTCATTGGTTCAAGGAGTACCCCAAATATGGATAACCCGACTGCAA
GTTGTTCTGGCATTAGTTCTATTCCTTGAGTGATATATAATTGAAGGGAA
GACACATTCTTTTCAATGACATGATTATTGGGCAACGACAAAATCAACTT
ACACTACTTAAAGCGGAAAGAAATTCGACAGGGACCGAGAAAATAATGGC
TTGGTGGAAGGTGATTACTTCGGCAGGTGAAATAGTTCTTTCCACCCACA
TGGGCAGAGCGTCTAGAATTTTCAATTCCAACAGATTCCTTAAACCCGGT
ATCAGGAAAACTTGCCATGTATACCAAGGAGGTTATAACCTCCTTGTGTA
TACCAGGTACACACCGTGACATTGTTTACCTGTACGCTAAACAAACGCCA
GGCGTCCCCACAATTTTGACGAAAAGCATAAACAGTTGTTTTCAATTTTT
TCACGCGTTAGCACACGAACCGTTGAGTTTATCTTTCTTGGCGATCGTGT
CGCAGGTGTGCAGTTCCCGTCTAAAGACCCCGGCGGGGGAGCGTCGTCCC
AAAACTTCGGGGCTCTCACGCTATGCCAGTAAATCTCAACTATACGCACT
GACAGATAAGCCTGTTCCTGTACTTAAATGTATACAAGATCCTCCACCCC
AACCTAACCTGCTACCGGAACACCTGTTGGCCAGAGTATTAAAAGGCCAG
ATGAACCGCTGCTGTTAGTTAAGCAGGGGGTGCTCGACTGGTTCTTCGAG
TGGTTTCGGACCCCAAACAGAACTCGACGAGAGACTTACTTGTCCACTTC
TTGCGTCATGGTAGCCATAGCCCGCCGCGGAATGCCGCTCCAACCCGTCA
GACCTGAGCAGCTGGTTCAAGCACTAGCGCCGAGGATGCTGGCAGACCTA
CGGGCAGTGGATCAGTGAGGGATTTCAGTCGGCGTGGAGTGGATGACAGT
CAGGAGAAGCAGCAGGAGACCGGCGGTGAGCTGCCGAAGACGAGCAGGGC
GTCCCTGAGTGGTGCGTCGGTATGCGCTGAGGTGGTGCCAACAGCCGAGA
TTCACCGCGAGGGAAGCAACAAGTTGTCGCTCCGTGACTCCGACCAATTA
TCCGGGGCGTTCACCCGTTTGTGAATGGCCCCTCTGGCGCTGTCAGGGCT
TATGGGTTTCCAAGATGGCTTCACTGATTGACATGTCAATGAGGTATCAT
GAATTAGCATATGAAAACACATGTCTATTCATTTTCTTCGGGCACGGCGC
ACTGATTTTGTTGTCTGAACCAAGTACATTAAATATCAAAAACTCCCGAA
AGTCCCGCGCTTTTTTCCTCACGCACTTGTCCTTTCAAGTACATACTTCT
TTCTAGTTGGGGGGGGGGGGCGGAGGTGCACTGTAAATATTATCTTAGGG
AAGGACGAGTTTGACTTGTAAAACTTGTTTACCTGAAAAGTATATCTCCA
AGATGGCTTCTGTTGAATTCTTGAATAATGGTTGTAGCCTGGGGGGTGTT
ATCAGTGCAGCCAGGGCATTGTCCACCCCAAGAAAGGTGCGAATTAACGC
ATTATCTCACCTGGGAGATGAAAGGCCCATGAAAACAAAGATGGCGGCGG
GGTGGCCCAAAATTGTGTCTGACTCGAGGAAAATTTCCATGAGAAAAAGT
GAAAAGATGCACCTGTTAGCAGCTCTGGGCAAGACAATTTCAATTATTTT
GCCATTGATCATAAAACGTGTGAATTGTACATTTGTAGAAGGAAACATTC
AACCTTAACTGGTCTTTAAGTATAAACCGAAGTGCCTCCATCATACATTT
TGTGAAAATCATTATCGCGAAATCATTATGTCAAAATGCTCTTATCAAAG
TTAATCGGCTCCATAATAAAAATCGATATTCTGTAAACTGTTGTATCTGT
ACATGATTTTAGATTTGATACCTAATGAATGTAACTATTTTCCATTGTAG
CACCCACTAGGCGTCATGGCTAAAACACGTGGTAAAGAAATCTTCAGTTA
AGCTGCCATATAGCCCCTGACATACACACACTGTTTTTTCTGCCACAGAG
AAATGTCCGCAATAGAAAGTTATTTTTTCTCTCGATAACTTTATGTACGT
CTTATGGAAATCTCAGAGTTAGCCATAAACATCTGTTTAGATACGTCCAC
AAGAACAAGACTAACTTTGTTTTTGCAACATAAATTCACAGTTAAAATAG
CCAACAGAACACTTCACTACCCAATCAAGAAATAACAGCAATCTTGTACA
TACATAGCAGCTCCTAGAAGCAACAAAATTTAGCAATTCTTTGTTGCTTC
ATCGTTCCTTCTTATTTGACGACAAACACCCAGCACCCGTTCGATCTTTG
AAAAGTTGTACCCAAGTGTTCAGAGCGGAACCACCAAGTATAGATTCAGC
AGCGATTCACAGTAAGATCTGTGCCGCCAGCAAGCGATTAAAATTCTTCC
CGGGTGTTGCTGCAGTCGTGGGCGAGTTGCAAGCCAACACAAACAAGCAA
CGGTAACACCTGTTATCCCATGGAAATGGCCATGTAAACATGCAAAAGTA
TGCTCTACTTTGCGGCCTCCGTGTCTTTTGAACAGCCTGTGAGGATACAG
GACAGGTGCGGAGATACATCAGGGGTTTACCACTGTATACACAAAGGACG
TCAAACAAAGGTTGTCCAGAAGATCTCTCAACGTTTGAAACTCGGGTTCT
TAAAGTATGTACAGCAAAGGACACCGTGGTCTGTATATGCAGAGATATAT
TACACGAATAAACAGATACATGTATAGAGATACATTGATAGATAGACTTA
TCCGGAGCACCGGAGATAACACACGGGAACAAACAGTATTGTTCTATGAC
AACATAGAACAGTATTGTTCTATGACAACATATACAATGAGGCTGCTGTG
TATAGTTGTTTCTGTGTGTAGGGGCATGGGGCATAAAGAGTTTAAAACTA
GTCACCTCACAGGAAGGACACTTCAGTAATCTTGATATGATCGTAAATGT
GACCTTACTTTGTAATTGTGACCTTGTAAATGTGACCTTAGGAATACATG
TGCGTCGACAATGTACTAGAAAATGTACTAGAACAAAGGACAGAGAGTTA
CTCTGACTTAAATTCGCAGGGACCTTCGGGAGTTTTTGATATTCAATGTA
CTTGGTTCAGACAACAAATCTTAGTTCACTTTAGTCCAACCATTTCAAAA
AAGGAACCTTTCCATAAAAACCTACAAATAAAAGGTACGCAAACAAGCGA
CGCTGTAGACCACGGTTTGTTTCTAGTAGAAATTTAGAATAGCACAGACA
GACAGCCAGCCAAAGCTCAACTACGTGACAGGATCCCCTTTATTATGACC
GGATAAAAAAAGTAATCTTGATCTAAGTCGTCTTTATTTCAGGATTACAA
AGAATTGCTACCTAGTCTATCCATAAGACATACACATAATCTCGACGTCA
CCATGACTGAAACATTTTCCAAACGTGTTGAGAAAAAAAACTTATCAGTC
TTTTCTCGGGCTAGCTACTCATTTAACAAGCAAAAGTAATCTGGTAAGGA
CTGGTGAGCCAGTATTGCTGGTCAGATAAAGTGCGGACGTGTCTCCCTGT
CAACTGTTCGCCACTGATACCGATAACGGTAGTCTAGAAAATATGAGTCA
CTGATGAATCTATGCTTAAGACTCTAACCAGGCTCTTGATACAACAGGGG
GAGGCCATCCTACTCATAGAGTGCTTTTACTATGGGAGGGGGAACTAGCA
TTGTAAGCTCGGATAAGCCCCCTTACACACAGCGTCCGGAATCATAGAAA
CCTCCTCCCACACATATCTGCTTCCTGTTCTGTACAAAACGTAAAAGTTG
AATGGCTGTCTCTACAAACTTGAGGGGGCATAATGGTATTTGGAGAATCT
TAAAATATATATTTCTGCTATCATCAAACTACAGATTATAGTAGAATTTT
GACAATCTTACTTAAGA Coding sequence (CDS) from alignment at Sc0000318:5390..9356+ >transcript:BL89785_cuf0 ID=transcript:BL89785_cuf0|Name=transcript:BL89785_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=306bp|location=Sequence derived from alignment at Sc0000318:5390..9356+ (Branchiostoma lanceolatum)
ATGGCTTCTGTTGAATTCTTGAATAATGGTTGTAGCCTGGGGGGTGTTAT
CAGTGCAGCCAGGGCATTGTCCACCCCAAGAAAGGTGCGAATTAACGCAT
TATCTCACCTGGGAGATGAAAGGCCCATGAAAACAAAGATGGCGGCGGGG
TGGCCCAAAATTGTGTCTGACTCGAGGAAAATTTCCATGAGAAAAAGTGA
AAAGATGCACCTGTTAGCAGCTCTGGGCAAGACAATTTCAATTATTTTGC
CATTGATCATAAAACGTGTGAATTGTACATTTGTAGAAGGAAACATTCAA
CCTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000318 | genome | Sc0000318:5390..9356 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL89785_cuf0 |
| Biotype | protein_coding |
|
