transcript:BL82455_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL82455_cuf0
Unique Nametranscript:BL82455_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL82455_cuf0

>transcript:BL82455_cuf0-protein ID=transcript:BL82455_cuf0-protein|Name=transcript:BL82455_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=134bp
SMNSPSRAFVDDLNLVESRRTSEPSKLQNDLDNLSSWTEKNKMKLNPSKC
KAVHICFARNPPPPPPLSINGHVLEVVPIAKCLGVIFQANLGWESQVTEM
TKKGNQRLYLLCRLRQFNLPVEDLLTVYKCFVRP
Run BLAST on NCBI

mRNA from alignment at Sc0000489:14407..14810+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL82455_cuf0 ID=transcript:BL82455_cuf0|Name=transcript:BL82455_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=404bp|location=Sequence derived from alignment at Sc0000489:14407..14810+ (Branchiostoma lanceolatum)
ACAGCATGAACTCACCGTCGAGGGCCTTTGTTGACGATTTGAACCTCGTC
GAATCAAGGCGCACATCCGAACCATCTAAGCTGCAAAACGACCTGGATAA
CCTGTCAAGCTGGACCGAGAAAAACAAGATGAAACTTAACCCCTCTAAGT
GCAAGGCTGTGCACATCTGCTTTGCCCGCAACCCTCCACCACCACCCCCT
CTTTCCATCAATGGACATGTGCTGGAGGTAGTGCCCATTGCAAAATGCTT
GGGAGTCATATTTCAAGCAAACCTGGGTTGGGAAAGTCAAGTTACAGAAA
TGACCAAGAAGGGAAACCAACGATTATACTTGCTGTGCAGACTTCGACAA
TTCAACTTACCAGTGGAGGATTTGCTGACGGTCTACAAGTGCTTTGTTCG
CCCA

Coding sequence (CDS) from alignment at Sc0000489:14407..14810+

>transcript:BL82455_cuf0 ID=transcript:BL82455_cuf0|Name=transcript:BL82455_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=402bp|location=Sequence derived from alignment at Sc0000489:14407..14810+ (Branchiostoma lanceolatum)
AGCATGAACTCACCGTCGAGGGCCTTTGTTGACGATTTGAACCTCGTCGA
ATCAAGGCGCACATCCGAACCATCTAAGCTGCAAAACGACCTGGATAACC
TGTCAAGCTGGACCGAGAAAAACAAGATGAAACTTAACCCCTCTAAGTGC
AAGGCTGTGCACATCTGCTTTGCCCGCAACCCTCCACCACCACCCCCTCT
TTCCATCAATGGACATGTGCTGGAGGTAGTGCCCATTGCAAAATGCTTGG
GAGTCATATTTCAAGCAAACCTGGGTTGGGAAAGTCAAGTTACAGAAATG
ACCAAGAAGGGAAACCAACGATTATACTTGCTGTGCAGACTTCGACAATT
CAACTTACCAGTGGAGGATTTGCTGACGGTCTACAAGTGCTTTGTTCGCC
CA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL82455gene:BL82455Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL82455_cuf0-E1BL82455_cuf0-E1-1564476830-473427Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL82455_cuf0transcript:BL82455_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000489genomeSc0000489:14407..14810 +
Properties
Property NameValue
Transcript idBL82455_cuf0
Biotypeprotein_coding