TCONS_00042708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042708
Unique NameTCONS_00042708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length907

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042708 ID=TCONS_00042708|Name=TCONS_00042708|organism=Clytia hemisphaerica|type=transcript|length=907bp
AGTACATATACGCCTTCTGATTGTCGCACTTTTAGCATGTCATCTTATGA
GAAGGATGTTGTATGTGGAGAGGGAAAGTCAAATTGAAAAGGTtatgatt
ttctaattttacaAATTTGGAATTTAGTCAAATGAACTTTAAGTTTATTC
CAATCACATTTTATATTCGTGACATGGCACATTTTACAGCACATATTCTT
AGGCCAGCTGaatTACCAAAGGAATTACCAAAACCATACGACAATGATTA
ACCTTGAACAACAGTCCACCACTTCCCTGATGAGGATTTAGAATATCAAC
ATCGAACTAGTTAATGAAGAAGATGAGCACAAAATTCAtTTGACTTCCAA
GAAAGATGACAAGTTAGGAGCATTTGCTGATATCTGTTTATGACGTTTAT
TAATCACTGGGTATAAAAGTTGTGTTCAAGCTGTTGTTTATATTACCAAA
TATATGGCAACTTATTAGCTGGAAGTCCAAGAAAACAGCAACTACCAATT
GGTCAACTGTGCTTAATCATCAACCGCTAGAATTAAATTATGTTAAAGGC
TATTCCTAGCTACCATTAACTACAAATTGTGAAGTTTGCCAGCGATGAAA
TGCTGAGGAGAGGTTTTCTTTGGAATTCAAGTAGCGCAAGTACGACATCA
TATTCTAGGATCCAGAAATTACTTATAATTAAAGACAATTAAAGACATGA
AACAAGAAGGATATCACAAAAATAGACCAACCCGgtacataatttttttc
atattttgatgttttgataaGCTCAGGAAATATTTTCCATAAAGATTATT
TCACACTCCAAAAAGACATTAGCTTAATTTTCTTCATCAAACTGACCCTT
CACCCGTTTTCGTCGGTAGACATAttagtacacccctgtctcacagcacC
AGTGGAA
Run BLAST on NCBI

transcript from alignment at sc0003617:2127..6632+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042708 ID=TCONS_00042708|Name=TCONS_00042708|organism=Clytia hemisphaerica|type=transcript|length=4506bp|location=Sequence derived from alignment at sc0003617:2127..6632+ (Clytia hemisphaerica)
AGTACATATACGCCTTCTGATTGTCGCACTTTTAGCATGTCATCTTATGA
GAAGGATGTTGTATGTGGAGAGGGAAAGTCAAATTGAAAAGGTtatgatt
ttctaattttacaAATTTGGAATTTAGTCAAATGAACTTTAAGTTTATTC
CAATCACATTTTATATTCGTGACATGGCACATTTTACAGCACATATTCTT
AGGCCAGCTGGTGagttttggctttttttgtttttctgtgttttgtttTA
GGTTTTTGGCTCTTAGTGTCTCTTTCTAAGTCAAGACAGGTGTAGCCTCT
TCTCAAAGACCATATAGAaattttttagccagtgggggtaaaaataattc
GATAGGGAATTGTTACTTTTTTACGGTTTGGGATTTGCACTGTTTTCAAG
TCAGTGGGGTTGAGAAAGTAGCACATATAGCCTGGAAATCCAAGCGTTGA
ACTTTTTCATTgtctagtgttttatattttACGTAATTTCAGAACTTTAC
AAATTGaggtaagaaaattttatttttctaaaatttaaagcttggatatc
caggatAGCAcatatttttgaagatttacTTGTTCTCAACTTcggttgag
ctagaatctgataATGTCTGTTTGTGCTGTGGGGCAGGCTGAAGTCTTCA
AAAAAAGTCcgattttggctgaaattttgcacatttgTGTCGACttgatt
gaaattttgcacATTTGTTTCTTGGTGAATATCTGGGtgtgttttgtttc
atttttagaaaacattgTTTTAGGGGCGTGGTCatgactttttttaaact
ttgaggcAGGCAGGAGACCTcaaaaaacaaagtttgaaagaaaagttatc
ttatatcaaaaattgtattttaatgtTTACAATTCGGTCTACAAGTAATT
TAaaaaatactgaagttgagtCAGTATGCGGTTAGCACTATTAGCATTAT
TACattttgtctgtacacagacccagtatatacggctgattttaaaatac
attTTACTTCGAAgtgataaacgtgagatacacactctggtacagagtat
atTACATTCAGcgggtcaaaatttgaagtataattttttaaCTGGGGATG
ACAGTTTGGCCAACTTTTCCAGTGGGAGGGGATCCCACCGGGTctttgtg
agaaggggtgttaggattttcattcaatttgtaaTTAGTATTTACCTAAA
ACTGGAATCAGGCTTTCTGTTGTGATAACACATTTGTAGGGTTTCATAGT
GTTGCTTGCAACATAACGGACACACATTTGACCCTCTAATATACAGCttt
cagttaaaaaaatttaaagttagTTGGTGATTTTGTGAAAACTAAGTCTT
TTTCGAGAAATTCGGtcaatctggtctgtaaaatacacattagtCATGTA
ATTAACTCAAAAATTTTCCTGAATAATATATTTGATATATTTACTTCACT
CCTGCAAATTTTCATGACACCTTATATATTTGTTGAAATATGACCGTTTT
TTCAGGCCATAACCccttttaaaaaattaattttgaatatcCAACTGTTT
TTACTTGGGGCTTCATAGATCTTGGTACTGACACTTACCATCATTTTTCT
GACTCTTCTATACCCAACCTTTCGagtggtacacgtttttttatataaga
acaaactatataagaacataaggcttcaatggccaaaatattaagaacaa
gttaaacaCATTTTATGGCTTTGAGGACCCTataacacccaatttcttaa
taAATTAGACAAGAACACcctcaaaatggtgaaaataagaacattttaag
aacatttttatggcttgaaactcaaaaagttaagaacatccgaaggcttc
caaAAAttggaatgttcttataaaaaaagtgtataaatCACTATTACTCC
ATTTTTTATATACCCATTTGGCCCTTATCTCATAGACTAATTAATCAATT
CATAAAGATGAATTTCACAGGGATGATTTActttaatacacccctgtctc
acagacccggtggaactttttcccacagtggggataaagatttctatcga
aatcacaacaggggatagaaattatattgttttaaGTTTAAATTATCCAG
TTATTGAGATGGTTTGGGAGCGTACTTTTAACATTGAATATCTaatggga
atgaaatcaaagtcaacaTCCCACCAGGAACGAAAATTGTAGGGTCTTTA
TCCAACCGGGGACGAATTTTTGGCTTATTCCTTTGGCTCGTCGCCAAGGG
TCGGTGATAGACGggtgttttaatttttttaatttcttttgttttagaat
TACCAAAGGAATTACCAAAACCATACGACAATGATTAACCTTGAACAACA
GTCCACCACTTCCCTGATGAGGATTTAGAATATCAACATCGAACTAGTTA
ATGAAGAAGATGAGCACAAAATTCAGTAAATTATTACTTTCATCATTGAA
ATTGCACTATGATATCCCTTTTTTCTTCGAGATAACCAAGGCAAGGCAAA
AGGTTTTTGAGCAGTGTTCACGCAAAACTTTAGTTATTTACTATGAAACA
CTAAAGAAAAGTTGTGGGTTCCAAGGTACATAAAGACCAGTTAAAAATGT
TGacacttttcctttttctttcttcagtTTGACTTCCAAGAAAGATGACA
AGTTAGGAGCATTTGCTGATATCTGTTTATGACGTTTATTAATCACTGGG
TATAAAAGTTGTGTTCAAGCTGTTGTTTATATTACCAAATATATGGCAAC
TTATTAGGTGAGTTTAAATCATTACACATGGATAAGCGACTCATTGCATT
ATCCTAAATCTTAAGACATCTTCAGAACTTTTCAATGCACTGTTGATATT
GAAATGCTAAGACAAAAGGTTAGTCAATAAAGCAAATGAACACCTTACCA
TGTCACAGAACCacaatcagcgccgaaatatatCGGCCATTCTGGGTATT
ATAACGTTTTGCTGAAGTTAAAGGTTGcgcgagaattgcagtttcagtac
ttccactttgcttcattggatttttcgatttgggaggggttaagtggctt
ccaggctatattctcagcctaaaatttaaattttttgttattaGCTGGAA
GTCCAAGAAAACAGCAACTACCAATTGGTCAACTGTGCTTAATCATCAAC
CGCTAGAATTAAATTATGTTAAAGGCTATTCCTAGCTACCATTAACTACA
AATTGTGAAGTAAGTTTTCAGGTAACAGTCATTATCATTCTGCTCAAAGG
CAACTCTAGACTAGAGtttacttctgactgaactttgctttctgatgatt
ttgatggcacAGAGTcggtgaagtagactagaggatttcgccttcttgaa
ttttttccctctcgttttcaaaaattatatgaaaacatcaaaacaataaa
atgtttctaaaattccataaaagtttataaaattataataaaaacaagaa
aatatctccaaaatttgaaagaaattggtTCATTAGTCAtggttttgtgt
ttgtttttctacaaaaagggactggatctagtggtacggatttgctacca
cctcaagcaaagccaaaaaatggaGCCCGTCAAATTACAcagggccactt
atcagcgccatccagtctatcagaAAGCTATAAGTGGTCCCTGGACTGTA
AGACAACTCTCTCTGGGGGAGatgtactaggtttgcgaggggacgggttt
atttgaaaatcgaccctttgagagactaaaATTTTTGTTCGATCCTTTAA
GAGACTATTTCTCCAATACTTAGCTCAATATCAAGATTTGATGAACCTTT
GAGGAAgtcgatttttgatattttctaattttggaAAACTCAATTGCAAA
TTTATCGTTTTTTGTGCCCCTTTAAGAGACTTTCGAGGGGTTAAAAAAGG
GATCCTCATGGCCCCACATACCCGACGCCCATTTCACCCATAGTATCACC
TCTCTCCCGGGCTCTGGCTTCACACATCAGAAGTGGAGTCGTTTAGGAAT
TTAAGTCTGATCATTCAAGTTTAATTTCATAGAATTTTTCACCCGTTAAA
AGAGGAGAAATCGTCGAAAGAAATTCCATTTCATTTTATCATTAACTATT
TCTTTTCCTTCCTAGTGTAGGTTAAGTCACTGTGATTTCTGTTCAGAGTC
TGGTTATTCTATATTGCCTTATGTCTTTTCAGGTTTGCCAGCGATGAAAT
GCTGAGGAGAGGTTTTCTTTGGAATTCAAGTAGCGCAAGTACGACATCAT
ATTCTAGGATCCAGAAATTACTTATAATTAAAGACAATTAAAGACATGAA
ACAAGAAGGATATCACAAAAATAGACCAACCCGgtacataatttttttca
tattttgatgttttgataaGCTCAGGAAATATTTTCCATAAAGATTATTT
CACACTCCAAAAAGACATTAGCTTAATTTTCTTCATCAAACTGACCCTTC
ACCCGTTTTCGTCGGTAGACATAttagtacacccctgtctcacagcacCA
GTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026517XLOC_026517Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042708-exon-sc0003617-1491911889:2127..2336TCONS_00042708-exon-sc0003617-1491911889:2127..2336Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1510915933:2127..2336TCONS_00042708-exon-sc0003617-1510915933:2127..2336Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1575043694:2127..2336TCONS_00042708-exon-sc0003617-1575043694:2127..2336Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1491911889:4424..4551TCONS_00042708-exon-sc0003617-1491911889:4424..4551Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1510915933:4424..4551TCONS_00042708-exon-sc0003617-1510915933:4424..4551Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1575043694:4424..4551TCONS_00042708-exon-sc0003617-1575043694:4424..4551Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1491911889:4754..4883TCONS_00042708-exon-sc0003617-1491911889:4754..4883Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1510915933:4754..4883TCONS_00042708-exon-sc0003617-1510915933:4754..4883Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1575043694:4754..4883TCONS_00042708-exon-sc0003617-1575043694:4754..4883Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1491911889:5221..5335TCONS_00042708-exon-sc0003617-1491911889:5221..5335Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1510915933:5221..5335TCONS_00042708-exon-sc0003617-1510915933:5221..5335Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1575043694:5221..5335TCONS_00042708-exon-sc0003617-1575043694:5221..5335Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1491911889:6309..6632TCONS_00042708-exon-sc0003617-1491911889:6309..6632Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1510915933:6309..6632TCONS_00042708-exon-sc0003617-1510915933:6309..6632Clytia hemisphaericaexon
TCONS_00042708-exon-sc0003617-1575043694:6309..6632TCONS_00042708-exon-sc0003617-1575043694:6309..6632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003617supercontigsc0003617:2127..6632 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.6029	28.3117	10.3776	9.53072	0.560366	1.24471	0.582403	0	0.177713	0.258962	0	0.176532	0.165001	0.263549	0	0	0	0	0	0	0	0.160041	28.1364	27.8764	0.0715416	0.42138	0.942864	2.04113	7.45386	15.3138
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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