TCONS_00044093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044093
Unique NameTCONS_00044093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044093 ID=TCONS_00044093|Name=TCONS_00044093|organism=Clytia hemisphaerica|type=transcript|length=425bp
GCATCATTTAGGCATTTGATTACTTTGAATAAGTAGGAATCGTCAGCAAA
CAAAGCAATATTTGAATCAACATGCAAGGGCATATCGTTTATATAAACAA
GAAACAAGAGGGGACCAAGAACTGAGCCTTGAGGGACACCTGAAGTGACC
GCTATCCGCTTTGACAGAGTTCCTCTTACAGCTACACATTGACTACGATT
GTTCAGAAAATCCGCTATCCATTTAAGCAAGGTTCCATGGATGCCATAAT
GTTCAAGTTTCAGTAAAAGTTTTCTGTGACAAACCTTGTCGAAGGCTTTA
CTAAAATCCAACAAAATGGAGTCTGTTTGTTCGCAATTGTTCAAAGATTG
CGCCAGCGTATTTATGGTTTGAATTAGCTGCGTCTCGCATGATCGAAATT
TTCTAAAGCCATGTTGTGTATCAGA
Run BLAST on NCBI

protein sequence of TCONS_00044093-protein

>TCONS_00044093-protein ID=TCONS_00044093-protein|Name=TCONS_00044093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
SDTQHGFRKFRSCETQLIQTINTLAQSLNNCEQTDSILLDFSKAFDKVCH
RKLLLKLEHYGIHGTLLKWIADFLNNRSQCVAVRGTLSKRIAVTSGVPQG
SVLGPLLFLVYINDMPLHVDSNIALFADDSYLFKVIKCLND
Run BLAST on NCBI

transcript from alignment at sc0004957:2..426

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044093 ID=TCONS_00044093|Name=TCONS_00044093|organism=Clytia hemisphaerica|type=transcript|length=425bp|location=Sequence derived from alignment at sc0004957:2..426 (Clytia hemisphaerica)
TCTGATACACAACATGGCTTTAGAAAATTTCGATCATGCGAGACGCAGCT
AATTCAAACCATAAATACGCTGGCGCAATCTTTGAACAATTGCGAACAAA
CAGACTCCATTTTGTTGGATTTTAGTAAAGCCTTCGACAAGGTTTGTCAC
AGAAAACTTTTACTGAAACTTGAACATTATGGCATCCATGGAACCTTGCT
TAAATGGATAGCGGATTTTCTGAACAATCGTAGTCAATGTGTAGCTGTAA
GAGGAACTCTGTCAAAGCGGATAGCGGTCACTTCAGGTGTCCCTCAAGGC
TCAGTTCTTGGTCCCCTCTTGTTTCTTGTTTATATAAACGATATGCCCTT
GCATGTTGATTCAAATATTGCTTTGTTTGCTGACGATTCCTACTTATTCA
AAGTAATCAAATGCCTAAATGATGC

Coding sequence (CDS) from alignment at sc0004957:2..426

>TCONS_00044093 ID=TCONS_00044093|Name=TCONS_00044093|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0004957:2..426 (Clytia hemisphaerica)
TCTGATACACAACATGGCTTTAGAAAATTTCGATCATGCGAGACGCAGCT
AATTCAAACCATAAATACGCTGGCGCAATCTTTGAACAATTGCGAACAAA
CAGACTCCATTTTGTTGGATTTTAGTAAAGCCTTCGACAAGGTTTGTCAC
AGAAAACTTTTACTGAAACTTGAACATTATGGCATCCATGGAACCTTGCT
TAAATGGATAGCGGATTTTCTGAACAATCGTAGTCAATGTGTAGCTGTAA
GAGGAACTCTGTCAAAGCGGATAGCGGTCACTTCAGGTGTCCCTCAAGGC
TCAGTTCTTGGTCCCCTCTTGTTTCTTGTTTATATAAACGATATGCCCTT
GCATGTTGATTCAAATATTGCTTTGTTTGCTGACGATTCCTACTTATTCA
AAGTAATCAAATGCCTAAATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027742XLOC_027742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044093-exon-sc0004957-1491911889:2..426TCONS_00044093-exon-sc0004957-1491911889:2..426Clytia hemisphaericaexon
TCONS_00044093-exon-sc0004957-1510915933:2..426TCONS_00044093-exon-sc0004957-1510915933:2..426Clytia hemisphaericaexon
TCONS_00044093-exon-sc0004957-1575043694:2..426TCONS_00044093-exon-sc0004957-1575043694:2..426Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044093-proteinTCONS_00044093-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004957supercontigsc0004957:2..426 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.76109	1.54265	2.62678	2.25302	5.15166	2.96235	0	2.49266	0.0145468	2.03493	0	0.843384	0.327224	0	0.404993	2.56945	0.481374	1.73656	0	0	0.722334	1.48132	0.607809	0	2.1861	0	1.69581	0.553428	1.53636	0.613874
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top