TCONS_00044187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044187
Unique NameTCONS_00044187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044187 ID=TCONS_00044187|Name=TCONS_00044187|organism=Clytia hemisphaerica|type=transcript|length=657bp
GATGATGTAACATCATAAGTATATACTACcttttaaaattatatcataCT
TGGCTTTAAACGTAGCTTCTGCAGATGGGTTCAACCTAAGTATAGTCCGG
GATCCGTAAATCACAATAGGTATACTTACGCAATATAGCATGCAGCAGAA
CAGAATTGGTGGAGTGATTGTGCAAGACAACTGCCACGCTGGAGTAATCG
TCTATTTGAAGGTCCTGAAGATGCTGTAACAGGGCTGGGTGGTTCAGAAA
GTTTACAAAGATTTCACCAAGTCACGGTGGAAAATAATTGCGATAGCTAC
AATTTGCTGTAAATCTTTAGAACTACTAAACCTAAAAAAACCTACAAAAA
CCTTCCGTAGAATGACCATAAACACCTCCTTTCCATAATCCCCACACCGA
TCCGATCCGGCTGGAGATTCAAAGTAACTAATTTGCCAAAAGCTTCGGTC
TTGCATATCATTCCATTTTGTCAATAAGATCTTATATCATAAGATCATTA
GATGTTACATTATTATGTTTTTTCTGATCGTgtaatatgtgaataatgtg
aTAAAGATGTTATAGCACAATATGTATAACATCTTCAGCAGTCTGCGACA
AATCTATCAGCCTAGCTTCACTCTTGCCATGTTCatgttcaatttttaat
ttaaaaa
Run BLAST on NCBI

transcript from alignment at sc0005129:3448..4104

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044187 ID=TCONS_00044187|Name=TCONS_00044187|organism=Clytia hemisphaerica|type=transcript|length=657bp|location=Sequence derived from alignment at sc0005129:3448..4104 (Clytia hemisphaerica)
tttttaaattaaaaattgaacatGAACATGGCAAGAGTGAAGCTAGGCTG
ATAGATTTGTCGCAGACTGCTGAAGATGTTATACATATTGTGCTATAACA
TCTTTAtcacattattcacatattacACGATCAGAAAAAACATAATAATG
TAACATCTAATGATCTTATGATATAAGATCTTATTGACAAAATGGAATGA
TATGCAAGACCGAAGCTTTTGGCAAATTAGTTACTTTGAATCTCCAGCCG
GATCGGATCGGTGTGGGGATTATGGAAAGGAGGTGTTTATGGTCATTCTA
CGGAAGGTTTTTGTAGGTTTTTTTAGGTTTAGTAGTTCTAAAGATTTACA
GCAAATTGTAGCTATCGCAATTATTTTCCACCGTGACTTGGTGAAATCTT
TGTAAACTTTCTGAACCACCCAGCCCTGTTACAGCATCTTCAGGACCTTC
AAATAGACGATTACTCCAGCGTGGCAGTTGTCTTGCACAATCACTCCACC
AATTCTGTTCTGCTGCATGCTATATTGCGTAAGTATACCTATTGTGATTT
ACGGATCCCGGACTATACTTAGGTTGAACCCATCTGCAGAAGCTACGTTT
AAAGCCAAGtatgatataattttaaaagGTAGTATATACTTATGATGTTA
CATCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027833XLOC_027833Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044187-exon-sc0005129-1491911889:3448..4104TCONS_00044187-exon-sc0005129-1491911889:3448..4104Clytia hemisphaericaexon
TCONS_00044187-exon-sc0005129-1510915933:3448..4104TCONS_00044187-exon-sc0005129-1510915933:3448..4104Clytia hemisphaericaexon
TCONS_00044187-exon-sc0005129-1575043694:3448..4104TCONS_00044187-exon-sc0005129-1575043694:3448..4104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005129supercontigsc0005129:3448..4104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.316766	0.231672	0.717316	0.614059	0.427176	0	0.712691	0.571897	0.266932	0.743937	0.641852	0.52741	0.421342	0.711047	0.134902	0.337799	0.951179	0.853062	0	0	0.306267	0	0.181599	0.165099	0.680194	1.13823	0	0	0	0.0895524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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