TCONS_00044875 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044875
Unique NameTCONS_00044875
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length922

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044875 ID=TCONS_00044875|Name=TCONS_00044875|organism=Clytia hemisphaerica|type=transcript|length=922bp
CTGATCTTCGAGTGGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCGA
GTGGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCGAGTAGTCTTCCA
CCATGGGTAGTCAGTGCCTGATCTTCGAGTAGTTTTCCACCATGGATAGT
CAGTGCCTGATCTTCGAGTGGTTTTCCACCATGGGTAGTCAGTGCCTGAT
CTTCGAGTGGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCGAGTGGT
TTTCCACCATGGGTAGTCAGTGCCTGATCTTCGAGTAGTCTTCCACCATG
GGTAGTCAGTGCCTGATCTTCGAGTAGTTTTCCACCATGGATAGTCAGTG
CCTGATCTTCGAGTGGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCG
AGTGGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCGAGTGGTTTTCC
ACCATGGGTAGTCAGTGCCTGATCTTCGAGTGGTTTTCCACCATGGGTAG
TCAGTACCTGATTTTCGAGTAGTTTTCCACCATGGATAGTCAGTGCCTGA
TCTTCGAGTAGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCGAGTAG
TTTTCCACCATGGATAGTCAGTACCGGATCGATGAGTAGTCTTCCACCAT
GGGTAGTCAGTACCTGATCTTCGAGTGGTACGCCACCATGGGTAGTCAGT
ACCTGATCGATGAGTAGTTTTCCACCATGGGTAGTCAGTGCCATTTCTGT
AAGGTCTGTGTGTTGTGCGCCACCTTGGGTAGTCAGTGCCTGATCTTCGA
GTGGTTTTCCACCATGGGTAGTCAGTGCCATTTCTATAAGGTCTGTGTGT
TGTGCGCCATTCCGGGTATTCTGTTCCAGGTCTTTGGGTGTTTTTCCACA
AATTCTTCAACCAATCAAACTA
Run BLAST on NCBI

transcript from alignment at sc0006374:1..1093+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044875 ID=TCONS_00044875|Name=TCONS_00044875|organism=Clytia hemisphaerica|type=transcript|length=1093bp|location=Sequence derived from alignment at sc0006374:1..1093+ (Clytia hemisphaerica)
CTGATCTTCGAGTGGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCGA
GTGGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCGAGTAGTCTTCCA
CCATGGGTAGTCAGTGCCTGATCTTCGAGTAGTTTTCCACCATGGATAGT
CAGTGCCTGATCTTCGAGTGGTTTTCCACCATGGGTAGTCAGTGCCTGAT
CTTCGAGTGGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCGAGTGGT
TTTCCACCATGGGTAGTCAGTGCCTGATCTTCGAGTAGTCTTCCACCATG
GGTAGTCAGTGCCTGATCTTCGAGTAGTTTTCCACCATGGATAGTCAGTG
CCTGATCTTCGAGTGGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCG
AGTGGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCGAGTGGTTTTCC
ACCATGGGTAGTCAGTGCCTGATCTTCGAGTGGTTTTCCACCATGGGTAG
TCAGTACCTGATTTTCGAGTAGTTTTCCACCATGGATAGTCAGTGCCTGA
TCTTCGAGTAGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTCGAGTAG
TTTTCCACCATGGATAGTCAGTACCGGATCGATGAGTAGTCTTCCACCAT
GGGTAGTCAGTACCTGATCTTCGAGTGGTACGCCACCATGGGTAGTCAGT
ACCTGATCGATGAGTAGTTTTCCACCATGGGTAGTCAGTGCCTGATCTTC
GAGTGGTACGCCACCATGGGTAGTCAGTACCATTTCTGTAAGGTCTGTTT
GTTGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTCTGTAAGGTCTGTGTGTTGTGCGCCACCTTGGG
TAGTCAGTGCCTGATCTTCGAGTGGTTTTCCACCATGGGTAGTCAGTGCC
ATTTCTATAAGGTCTGTGTGTTGTGCGCCATTCCGGGTATTCTGTTCCAG
GTCTTTGGGTGTTTTTCCACAAATTCTTCAACCAATCAAACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028478XLOC_028478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044875-exon-sc0006374-1491911889:1..741TCONS_00044875-exon-sc0006374-1491911889:1..741Clytia hemisphaericaexon
TCONS_00044875-exon-sc0006374-1510915933:1..741TCONS_00044875-exon-sc0006374-1510915933:1..741Clytia hemisphaericaexon
TCONS_00044875-exon-sc0006374-1575043694:1..741TCONS_00044875-exon-sc0006374-1575043694:1..741Clytia hemisphaericaexon
TCONS_00044875-exon-sc0006374-1491911889:781..792TCONS_00044875-exon-sc0006374-1491911889:781..792Clytia hemisphaericaexon
TCONS_00044875-exon-sc0006374-1510915933:781..792TCONS_00044875-exon-sc0006374-1510915933:781..792Clytia hemisphaericaexon
TCONS_00044875-exon-sc0006374-1575043694:781..792TCONS_00044875-exon-sc0006374-1575043694:781..792Clytia hemisphaericaexon
TCONS_00044875-exon-sc0006374-1491911889:925..1093TCONS_00044875-exon-sc0006374-1491911889:925..1093Clytia hemisphaericaexon
TCONS_00044875-exon-sc0006374-1510915933:925..1093TCONS_00044875-exon-sc0006374-1510915933:925..1093Clytia hemisphaericaexon
TCONS_00044875-exon-sc0006374-1575043694:925..1093TCONS_00044875-exon-sc0006374-1575043694:925..1093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006374supercontigsc0006374:1..1093 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.57795	0.780651	11.0249	4.77689	8.87684	5.40613	511.937	501.256	0.304468	1.03431	176.277	200.854	1961.19	2189.48	676.561	830.87	242.624	325.785	760.102	807.428	0	0.0728155	2.31517	4.51357
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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