TCONS_00044969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044969
Unique NameTCONS_00044969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044969 ID=TCONS_00044969|Name=TCONS_00044969|organism=Clytia hemisphaerica|type=transcript|length=514bp
CCACACGCAAAGCTATCACAATGGCTGACAGTAACGGAGTGATGCAAGAA
CTTCAACCAAGAGCTACCACAAGAACTATCCCATTCTTAGGAAAGTTTCG
CTTGGTTGGTGATTTGGAGATTAAAGaaatgatgtttttattgtttgcAT
TCGTCAGCATGTTAGGTGCCGGCATCATTTCCGTTGTCCGTATCCAAATG
ACCTCGGACGCTGACCCGGAAATGACATTCTCTATCCTATTACTCGTCAA
TCTAgTATTTATCTTATATTATGTCGTGCATGGTGTGTTTTGCGAGCGTC
CATTGGAACTGTTAGTATCGGTCATCGCAACGTTAATCGTCATGTTGTAT
TGTATAGTGGAATATGCTGTCCATGGATATCAAAGTGTTGGCGAAAACAA
GAACCTTAAGCTAGTAAGAATCACAGTTAATTTTCAGCCGATCTATTATC
TGTTTCTGCGCAATCGGGATGTCATTATACCCTACCCGATACCCTTTAAG
CTTGTATTTTTGTA
Run BLAST on NCBI

protein sequence of TCONS_00044969-protein

>TCONS_00044969-protein ID=TCONS_00044969-protein|Name=TCONS_00044969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
TRKAITMADSNGVMQELQPRATTRTIPFLGKFRLVGDLEIKEMMFLLFAF
VSMLGAGIISVVRIQMTSDADPEMTFSILLLVNLVFILYYVVHGVFCERP
LELLVSVIATLIVMLYCIVEYAVHGYQSVGENKNLKLVRITVNFQPIYYL
FLRNRDVIIPYPIPFKLVFL
Run BLAST on NCBI

transcript from alignment at sc0006573:1..1249+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044969 ID=TCONS_00044969|Name=TCONS_00044969|organism=Clytia hemisphaerica|type=transcript|length=1249bp|location=Sequence derived from alignment at sc0006573:1..1249+ (Clytia hemisphaerica)
CCACACGCAAAGCTATCACAATGGCTGACAGTAACGGAGTGATGCAAGAA
CTTCAACCAAGAGCTACCACAAGAACTATCCCATTCTTAGGAAAGGTAAA
GAAATTATCTAGACTATTTCTCGCAACCACTTTATTGTCTTTCTTTCTTA
ATCTCAATTTATTGAGGTCGAAGGAACGAACCAGGAGTCGAAGGTGAACG
GAAATTTTCACTGGTCTAAATCACGAACAAAATTACCATTCACCGGTCTA
AAAATACGGTTCGCCACCTTAAAGTTCATATTCACGCTAATCGATACGTT
GGGCGTTAAGAATTCGCCGACCTAGAGTCTAGAATACGCTGGCTttgatt
tttcatttgagtgtatcaaaaataaagcaaaaccCCCGGAAGACAATGGT
GTCTTAAAATTTTTCTGTGGGATTTAGTTGTTCCAGATTTAATTCATGTG
TAAGAAGATTCCATGAtgatttttattgtattttatttttacttttcttc
agTTTCGCTTGGTTGGTGATTTGGAGATTAAAGaaatgatgtttttattg
tttgcATTCGTCAGCATGTTAGGTGCCGGCATCATTTCCGTTGTCCGTAT
CCAAATGACCTCGGACGCTGACCCGGAAATGACATTCTCTATCCTATTAC
TCGTCAATCTAggtaattttttataaataaatagtTTCAGTGTTTAAAGT
TCTTCCGTCTAAATGAATTACAGAGGCTTTTGCGTCTCAAAATTctacaa
aattcaccaaaatttcaaaaataatctcTTGAACAATATACCATATCGTT
ATCTTTTTCCATAGTATTCAGGTATTCATGCTATACGTTCATCTATCTTA
TATTACATTCTTCCATAGTATTTATGTTATAATACGTTCTTTCATAGTAT
TCATCTTACTTATCACGTTCTTTCATATCAGTAATCTTATATTACGTTCT
TCACCTGGTATTATCTTATGTATTACATTTTCTTCCATAGTATTTATCTT
ATATTATGTCGTGCATGGTGTGTTTTGCGAGCGTCCATTGGAACTGTTAG
TATCGGTCATCGCAACGTTAATCGTCATGTTGTATTGTATAGTGGAATAT
GCTGTCCATGGATATCAAAGTGTTGGCGAAAACAAGAACCTTAAGCTAGT
AAGAATCACAGTTAATTTTCAGCCGATCTATTATCTGTTTCTGCGCAATC
GGGATGTCATTATACCCTACCCGATACCCTTTAAGCTTGTATTTTTGTA

Coding sequence (CDS) from alignment at sc0006573:1..1249+

>TCONS_00044969 ID=TCONS_00044969|Name=TCONS_00044969|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at sc0006573:1..1249+ (Clytia hemisphaerica)
ACACGCAAAGCTATCACAATGGCTGACAGTAACGGAGTGATGCAAGAACT
TCAACCAAGAGCTACCACAAGAACTATCCCATTCTTAGGAAAGTTTCGCT
TGGTTGGTGATTTGGAGATTAAAGaaatgatgtttttattgtttgcATTC
GTCAGCATGTTAGGTGCCGGCATCATTTCCGTTGTCCGTATCCAAATGAC
CTCGGACGCTGACCCGGAAATGACATTCTCTATCCTATTACTCGTCAATC
TAgTATTTATCTTATATTATGTCGTGCATGGTGTGTTTTGCGAGCGTCCA
TTGGAACTGTTAGTATCGGTCATCGCAACGTTAATCGTCATGTTGTATTG
TATAGTGGAATATGCTGTCCATGGATATCAAAGTGTTGGCGAAAACAAGA
ACCTTAAGCTAGTAAGAATCACAGTTAATTTTCAGCCGATCTATTATCTG
TTTCTGCGCAATCGGGATGTCATTATACCCTACCCGATACCCTTTAAGCT
TGTATTTTTGACACGCAAAGCTATCACAATGGCTGACAGTAACGGAGTGA
TGCAAGAACTTCAACCAAGAGCTACCACAAGAACTATCCCATTCTTAGGA
AAGTTTCGCTTGGTTGGTGATTTGGAGATTAAAGaaatgatgtttttatt
gtttgcATTCGTCAGCATGTTAGGTGCCGGCATCATTTCCGTTGTCCGTA
TCCAAATGACCTCGGACGCTGACCCGGAAATGACATTCTCTATCCTATTA
CTCGTCAATCTAgTATTTATCTTATATTATGTCGTGCATGGTGTGTTTTG
CGAGCGTCCATTGGAACTGTTAGTATCGGTCATCGCAACGTTAATCGTCA
TGTTGTATTGTATAGTGGAATATGCTGTCCATGGATATCAAAGTGTTGGC
GAAAACAAGAACCTTAAGCTAGTAAGAATCACAGTTAATTTTCAGCCGAT
CTATTATCTGTTTCTGCGCAATCGGGATGTCATTATACCCTACCCGATAC
CCTTTAAGCTTGTATTTTTGACACGCAAAGCTATCACAATGGCTGACAGT
AACGGAGTGATGCAAGAACTTCAACCAAGAGCTACCACAAGAACTATCCC
ATTCTTAGGAAAGTTTCGCTTGGTTGGTGATTTGGAGATTAAAGaaatga
tgtttttattgtttgcATTCGTCAGCATGTTAGGTGCCGGCATCATTTCC
GTTGTCCGTATCCAAATGACCTCGGACGCTGACCCGGAAATGACATTCTC
TATCCTATTACTCGTCAATCTAgTATTTATCTTATATTATGTCGTGCATG
GTGTGTTTTGCGAGCGTCCATTGGAACTGTTAGTATCGGTCATCGCAACG
TTAATCGTCATGTTGTATTGTATAGTGGAATATGCTGTCCATGGATATCA
AAGTGTTGGCGAAAACAAGAACCTTAAGCTAGTAAGAATCACAGTTAATT
TTCAGCCGATCTATTATCTGTTTCTGCGCAATCGGGATGTCATTATACCC
TACCCGATACCCTTTAAGCTTGTATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028560XLOC_028560Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044969-proteinTCONS_00044969-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044969-exon-sc0006573-1491911889:1..95TCONS_00044969-exon-sc0006573-1491911889:1..95Clytia hemisphaericaexon
TCONS_00044969-exon-sc0006573-1510915933:1..95TCONS_00044969-exon-sc0006573-1510915933:1..95Clytia hemisphaericaexon
TCONS_00044969-exon-sc0006573-1575043694:1..95TCONS_00044969-exon-sc0006573-1575043694:1..95Clytia hemisphaericaexon
TCONS_00044969-exon-sc0006573-1491911889:503..662TCONS_00044969-exon-sc0006573-1491911889:503..662Clytia hemisphaericaexon
TCONS_00044969-exon-sc0006573-1510915933:503..662TCONS_00044969-exon-sc0006573-1510915933:503..662Clytia hemisphaericaexon
TCONS_00044969-exon-sc0006573-1575043694:503..662TCONS_00044969-exon-sc0006573-1575043694:503..662Clytia hemisphaericaexon
TCONS_00044969-exon-sc0006573-1491911889:991..1249TCONS_00044969-exon-sc0006573-1491911889:991..1249Clytia hemisphaericaexon
TCONS_00044969-exon-sc0006573-1510915933:991..1249TCONS_00044969-exon-sc0006573-1510915933:991..1249Clytia hemisphaericaexon
TCONS_00044969-exon-sc0006573-1575043694:991..1249TCONS_00044969-exon-sc0006573-1575043694:991..1249Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006573supercontigsc0006573:1..1249 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
71.4208	74.4106	87.8466	82.9806	8.31383	7.06552	5.83238	5.46021	11.2724	11.5344	19.9163	12.7049	14.1571	12.5331	19.6831	24.4544	13.2728	13.9622	16.6929	15.5271	10.4593	10.5325	24.6736	31.7684	9.61639	9.69699	11.0054	7.31951	14.7182	15.3901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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