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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045116 ID=TCONS_00045116|Name=TCONS_00045116|organism=Clytia hemisphaerica|type=transcript|length=1230bp
GTAAATATATAaagtgaagatcagagatctgcctcaaggagagaaagtgt
tgaaaatactaaataaaataaagatgaaacataaaaagggactagtattt
ttataattttttcggGTACGGTCATTTTACACCACTAtgcaaaacatcag
aaaaatCTGATATGCCGATCCCGataaaagctggtaacagacgaacgatc
gaacagaggttaattcaaAAGACCTTCGAGGAAGGTTAAGAAAAAGACGG
TGTAATAGCAAAATTTCAGTTTAAAAAATGTCTTTCGCAGAAAAGCAGAT
ATTTACAAAACAAAAGatcaaataaaaacatacaaaatttCCCTGAAATA
AGTTCTACCATTGGATTAACGCCTTCCTCCTGGACCACCGCGTCCTCTAC
CACGTCCTGGGCCGCCACCACGAGCACGGCCTCTTGAAGGTCCACCTCGG
CCACGTCCACGCCCGCGCGTACCACGGTCTCCGCCACGTCTTTTTGGTTC
ATCATCCACGAGCAAAGTATCGAGTGGTAAACTTTCCGGTAAGATAAAAT
AACGGATGTTGTTTCCACGGATACTGAGTGTTTCTAACTGGACAGGGTCT
TTACCTTTCAATGTCATCTTGACCGCTTTTAAATGTGTGTTCATGCTCAT
ATCGACTCCTGGGCATAAGAGAAGAAAATAAAATGCAAATCAAAAGATTC
ATATAGAAAACACACTCAACCAGCAAAAAGGTGATCCTAAAATTTGGATA
AAGAACTTATGTAAACTCGATCTGAAACCAATAGAATATTGAACCTTACA
GCTCTTTATTCAAACAGGAGCTCCGCAATGGACTTTTCCTACTATTGAAA
CGCCTCGTTGAAGCAATAACTTAACTCTTCCCAGGCCCAAAACAAATAAT
TTGTTGATAAAAGAGACAAGGTTTCTCAAAAAATCTGCAAGCTTCGAATC
AAATCCAACACTTTCTTATTAATACAGGCTGCCAAAAAGTTTAGGAAATG
CAGGGAAATGAACACAGACAGACCATTGAGTTGAAACCCTGAAGGGGCTA
GAGAGGAAGCTCTTGGGTGAGAATCGAGGCCACTTATCTCCCATCTAAAA
CGCATGACGAGTGATTTtcgagaaaacaaagaaagctctatattcaaaaa
aaaatttaacactGTGAAAGTTTCTGACTtgtaatataatcctattagca
gcatgtataccaaattttgcAATTATACAC Run BLAST on NCBI transcript from alignment at sc0006964:29..1258 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045116 ID=TCONS_00045116|Name=TCONS_00045116|organism=Clytia hemisphaerica|type=transcript|length=1230bp|location=Sequence derived from alignment at sc0006964:29..1258 (Clytia hemisphaerica)
GTGTATAATTgcaaaatttggtatacatgctgctaataggattatattac
aAGTCAGAAACTTTCACagtgttaaatttttttttgaatatagagctttc
tttgttttctcgaAAATCACTCGTCATGCGTTTTAGATGGGAGATAAGTG
GCCTCGATTCTCACCCAAGAGCTTCCTCTCTAGCCCCTTCAGGGTTTCAA
CTCAATGGTCTGTCTGTGTTCATTTCCCTGCATTTCCTAAACTTTTTGGC
AGCCTGTATTAATAAGAAAGTGTTGGATTTGATTCGAAGCTTGCAGATTT
TTTGAGAAACCTTGTCTCTTTTATCAACAAATTATTTGTTTTGGGCCTGG
GAAGAGTTAAGTTATTGCTTCAACGAGGCGTTTCAATAGTAGGAAAAGTC
CATTGCGGAGCTCCTGTTTGAATAAAGAGCTGTAAGGTTCAATATTCTAT
TGGTTTCAGATCGAGTTTACATAAGTTCTTTATCCAAATTTTAGGATCAC
CTTTTTGCTGGTTGAGTGTGTTTTCTATATGAATCTTTTGATTTGCATTT
TATTTTCTTCTCTTATGCCCAGGAGTCGATATGAGCATGAACACACATTT
AAAAGCGGTCAAGATGACATTGAAAGGTAAAGACCCTGTCCAGTTAGAAA
CACTCAGTATCCGTGGAAACAACATCCGTTATTTTATCTTACCGGAAAGT
TTACCACTCGATACTTTGCTCGTGGATGATGAACCAAAAAGACGTGGCGG
AGACCGTGGTACGCGCGGGCGTGGACGTGGCCGAGGTGGACCTTCAAGAG
GCCGTGCTCGTGGTGGCGGCCCAGGACGTGGTAGAGGACGCGGTGGTCCA
GGAGGAAGGCGTTAATCCAATGGTAGAACTTATTTCAGGGaaattttgta
tgtttttatttgatCTTTTGTTTTGTAAATATCTGCTTTTCTGCGAAAGA
CATTTTTTAAACTGAAATTTTGCTATTACACCGTCTTTTTCTTAACCTTC
CTCGAAGGTCTTttgaattaacctctgttcgatcgttcgtctgttaccag
cttttatCGGGATCGGCATATCAGatttttctgatgttttgcaTAGTGGT
GTAAAATGACCGTACccgaaaaaattataaaaatactagtccctttttat
gtttcatctttattttatttagtattttcaacactttctctccttgaggc
agatctctgatcttcacttTATATATTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045116-exon-sc0006964-1491911889:29..1258 | TCONS_00045116-exon-sc0006964-1491911889:29..1258 | Clytia hemisphaerica | exon |
| TCONS_00045116-exon-sc0006964-1510915933:29..1258 | TCONS_00045116-exon-sc0006964-1510915933:29..1258 | Clytia hemisphaerica | exon |
| TCONS_00045116-exon-sc0006964-1575043694:29..1258 | TCONS_00045116-exon-sc0006964-1575043694:29..1258 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006964 | supercontig | sc0006964:29..1258 . |
Blast
BLAST of TCONS_00045116 vs. Swiss-Prot (Human)
Match: SMD1 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.820e-27 Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = -2
Query: 492 GVDMSMNTHLKAVKMTLKGKDPVQLETLSIRGNNIRYFILPESLPLDTLLVDDEPK 659
GVD+SMNTHLKAVKMTLK ++PVQLETLSIRGNNIRYFILP+SLPLDTLLVD EPK
Sbjct: 31 GVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPK 86
The following BLAST results are available for this feature:
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