TCONS_00045183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045183
Unique NameTCONS_00045183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045183 ID=TCONS_00045183|Name=TCONS_00045183|organism=Clytia hemisphaerica|type=transcript|length=299bp
TTTAGAATGTTTGATGCATTCCAAACATATTCTGAAAATCATGGTAGTGA
CGGTTGTGAATCTGTTCTAACAATTGTTTTCGAGCATGTTGATCAGGATT
TGTCGATGTTCCTTCAAAAATATCCAGCACCAGCCCTCCCAGAACAACTC
ATTAAGGACTTAATGTACCAAATGTTGTCTGGCCTCGATTACCTACACAT
CAACAGATTGATTCACAGAGATATCAAGCCTCAAAATATCCTTATCACTA
AAAATAAGCAAGTCAAAATAGCAGATTTTGGGCTTGCTAGGGTTTACGG
Run BLAST on NCBI

protein sequence of TCONS_00045183-protein

>TCONS_00045183-protein ID=TCONS_00045183-protein|Name=TCONS_00045183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
FRMFDAFQTYSENHGSDGCESVLTIVFEHVDQDLSMFLQKYPAPALPEQL
IKDLMYQMLSGLDYLHINRLIHRDIKPQNILITKNKQVKIADFGLARVY
Run BLAST on NCBI

transcript from alignment at sc0007151:376..1129+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045183 ID=TCONS_00045183|Name=TCONS_00045183|organism=Clytia hemisphaerica|type=transcript|length=754bp|location=Sequence derived from alignment at sc0007151:376..1129+ (Clytia hemisphaerica)
TTTAGAATGTTTGATGCATTCCAAACATATTCTGAAAATCATGGTAGTGA
CGGTTGTGAATCTGTTCTAACAATTGTTTTCGAGCATGTTGATCAGGATT
TGTCGATGTTCCTTCAAAAATATCCAGCACCAGCCCTCCCAGAACAACTC
ATTAAGGTTTGTTGATACTTTCCTTGTTTACAGGAACCAATCAAGATGGA
TTGTTCACCAGAGTTTTACATTATTTCCTTTCCTTATACTTACGCTCTTC
GTTCTTTAAAGCAGAGACAGGTGCAATGCAGATTTGTTCTTTCAATTGCA
TCAGTAACAGTAATTcaccttttttttataaaaacgcaAGTCCGAAAATT
GGCTAAAACCTAAGAACAGATTAAGAACAATCCGAGCCTCAGAAACTACT
ACGGAAGTACCAGCTGGAAAGTACTGAGTTTAAACATTTTAAGAGTTTTT
AAACCCATTCTAAGTTTCAAAGCCTAAACTCAAAATGGAGAGACATACTG
ggagaagaaaaaaagtttaaaaaagtgggaaaaaaggaaattgaaaTACT
GTAAGCTCTTGTacgaaatagaaataaaaaccGTCTGATAACTATATTTT
GATGTTTGCAGGACTTAATGTACCAAATGTTGTCTGGCCTCGATTACCTA
CACATCAACAGATTGATTCACAGAGATATCAAGCCTCAAAATATCCTTAT
CACTAAAAATAAGCAAGTCAAAATAGCAGATTTTGGGCTTGCTAGGGTTT
ACGG

Coding sequence (CDS) from alignment at sc0007151:376..1129+

>TCONS_00045183 ID=TCONS_00045183|Name=TCONS_00045183|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0007151:376..1129+ (Clytia hemisphaerica)
TTTAGAATGTTTGATGCATTCCAAACATATTCTGAAAATCATGGTAGTGA
CGGTTGTGAATCTGTTCTAACAATTGTTTTCGAGCATGTTGATCAGGATT
TGTCGATGTTCCTTCAAAAATATCCAGCACCAGCCCTCCCAGAACAACTC
ATTAAGGACTTAATGTACCAAATGTTGTCTGGCCTCGATTACCTACACAT
CAACAGATTGATTCACAGAGATATCAAGCCTCAAAATATCCTTATCACTA
AAAATAAGCAAGTCAAAATAGCAGATTTTGGGCTTGCTAGGGTTTACTTT
AGAATGTTTGATGCATTCCAAACATATTCTGAAAATCATGGTAGTGACGG
TTGTGAATCTGTTCTAACAATTGTTTTCGAGCATGTTGATCAGGATTTGT
CGATGTTCCTTCAAAAATATCCAGCACCAGCCCTCCCAGAACAACTCATT
AAGGACTTAATGTACCAAATGTTGTCTGGCCTCGATTACCTACACATCAA
CAGATTGATTCACAGAGATATCAAGCCTCAAAATATCCTTATCACTAAAA
ATAAGCAAGTCAAAATAGCAGATTTTGGGCTTGCTAGGGTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028766XLOC_028766Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045183-proteinTCONS_00045183-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045183-exon-sc0007151-1491911889:376..531TCONS_00045183-exon-sc0007151-1491911889:376..531Clytia hemisphaericaexon
TCONS_00045183-exon-sc0007151-1510915933:376..531TCONS_00045183-exon-sc0007151-1510915933:376..531Clytia hemisphaericaexon
TCONS_00045183-exon-sc0007151-1575043694:376..531TCONS_00045183-exon-sc0007151-1575043694:376..531Clytia hemisphaericaexon
TCONS_00045183-exon-sc0007151-1491911889:987..1129TCONS_00045183-exon-sc0007151-1491911889:987..1129Clytia hemisphaericaexon
TCONS_00045183-exon-sc0007151-1510915933:987..1129TCONS_00045183-exon-sc0007151-1510915933:987..1129Clytia hemisphaericaexon
TCONS_00045183-exon-sc0007151-1575043694:987..1129TCONS_00045183-exon-sc0007151-1575043694:987..1129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007151supercontigsc0007151:376..1129 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.6258	29.0612	12.101	5.11225	85.7867	75.2839	84.3694	84.5751	76.6473	85.3411	98.1612	66.4224	75.2208	70.6549	69.951	77.0645	74.3329	62.7002	22.0424	29.1788	52.514	52.0133	41.0998	32.2607	57.4324	65.8665	25.601	15.6765	28.2715	23.1677
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00045183 vs. Swiss-Prot (Human)
Match: CDK6 (Cyclin-dependent kinase 6 OS=Homo sapiens GN=CDK6 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.664e-33
Identity = 49/80 (61.25%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:   58 ESVLTIVFEHVDQDLSMFLQKYPAPALPEQLIKDLMYQMLSGLDYLHINRLIHRDIKPQNILITKNKQVKIADFGLARVY 297
            E+ LT+VFEHVDQDL+ +L K P P +P + IKD+M+Q+L GLD+LH +R++HRD+KPQNIL+T + Q+K+ADFGLAR+Y
Sbjct:   91 ETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIY 170
The following BLAST results are available for this feature:
BLAST of TCONS_00045183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDK63.664e-3361.25Cyclin-dependent kinase 6 OS=Homo sapiens GN=CDK6 ... [more]
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