TCONS_00045484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045484
Unique NameTCONS_00045484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045484 ID=TCONS_00045484|Name=TCONS_00045484|organism=Clytia hemisphaerica|type=transcript|length=492bp
ACCAGACCCATTTAGAATTCTATTAAGTGGTGGTGCAGGTGTTGGAAAAA
GTTTCTTAGTAAAAGCTTTGACGGAACAGTTGAGAAAAATCTTGAAAGAG
CCTGGTCAAAATTGTGACACACACCCATCTGTTCTTGTAACTGCATCAAC
TGGTAAAGCGGCAGCAAACATTGACGGAACCACCTTGCACTCAGTGTTGA
AACTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCAGTGTTGAAACTACCGATATATGGAAAGGGGACATACATTATTA
ATAAATCACTCAGCAATTCAAATATGCAAAATCTGAGAGTAAAATTTAAA
TACTTAAAGATTCTTATAATTGACGAAATCTCTATGATTGGTGACAAAAG
TTTTGATGATTTGAATTTAAGAttgcaaaatatcaaagaaaataaagatt
cgTTTGGTGGCATTTCCTTGTTATTGATTGGAGACTTTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00045484-protein

>TCONS_00045484-protein ID=TCONS_00045484-protein|Name=TCONS_00045484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
PDPFRILLSGGAGVGKSFLVKALTEQLRKILKEPGQNCDTHPSVLVTAST
GKAAANIDGTTLHSVLKLXXXXXXXXXXXXXXXXXSVETTDIWKGDIHY
Run BLAST on NCBI

transcript from alignment at sc0008011:145..636

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045484 ID=TCONS_00045484|Name=TCONS_00045484|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at sc0008011:145..636 (Clytia hemisphaerica)
GAAAAAAGTCTCCAATCAATAACAAGGAAATGCCACCAAAcgaatcttta
ttttctttgatattttgcaaTCTTAAATTCAAATCATCAAAACTTTTGTC
ACCAATCATAGAGATTTCGTCAATTATAAGAATCTTTAAGTATTTAAATT
TTACTCTCAGATTTTGCATATTTGAATTGCTGAGTGATTTATTAATAATG
TATGTCCCCTTTCCATATATCGGTAGTTTCAACACTGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAGTTTCAACACT
GAGTGCAAGGTGGTTCCGTCAATGTTTGCTGCCGCTTTACCAGTTGATGC
AGTTACAAGAACAGATGGGTGTGTGTCACAATTTTGACCAGGCTCTTTCA
AGATTTTTCTCAACTGTTCCGTCAAAGCTTTTACTAAGAAACTTTTTCCA
ACACCTGCACCACCACTTAATAGAATTCTAAATGGGTCTGGT

Coding sequence (CDS) from alignment at sc0008011:145..636

>TCONS_00045484 ID=TCONS_00045484|Name=TCONS_00045484|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0008011:145..636 (Clytia hemisphaerica)
TTAATAATGTATGTCCCCTTTCCATATATCGGTAGTTTCAACACTGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAGT
TTCAACACTGAGTGCAAGGTGGTTCCGTCAATGTTTGCTGCCGCTTTACC
AGTTGATGCAGTTACAAGAACAGATGGGTGTGTGTCACAATTTTGACCAG
GCTCTTTCAAGATTTTTCTCAACTGTTCCGTCAAAGCTTTTACTAAGAAA
CTTTTTCCAACACCTGCACCACCACTTAATAGAATTCTAAATGGGTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029061XLOC_029061Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045484-proteinTCONS_00045484-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045484-exon-sc0008011-1491911889:145..636TCONS_00045484-exon-sc0008011-1491911889:145..636Clytia hemisphaericaexon
TCONS_00045484-exon-sc0008011-1510915933:145..636TCONS_00045484-exon-sc0008011-1510915933:145..636Clytia hemisphaericaexon
TCONS_00045484-exon-sc0008011-1575043694:145..636TCONS_00045484-exon-sc0008011-1575043694:145..636Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008011supercontigsc0008011:145..636 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.294993	0.347293	0.295392	0.138869	0	0	0	0	0.123338	0	0	0.322334	0.284569	0	0.076764	0.495471	0.100624	0	0	0.433292	0.858551	0.775143	0.401659	0.383117	0.430482	0.254051	0.186127	0.511121	0.566568	0.308507
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010285DNA_helicase_pif1-like
IPR027417P-loop_NTPase
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO:0000723telomere maintenance
Vocabulary: Molecular Function
TermDefinition
GO:0003678DNA helicase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
biological_process GO:0000723 telomere maintenance
molecular_function GO:0003678 DNA helicase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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