|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045625 ID=TCONS_00045625|Name=TCONS_00045625|organism=Clytia hemisphaerica|type=transcript|length=673bpRun BLAST on NCBI transcript from alignment at scaffold_10:287429..288101- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045625 ID=TCONS_00045625|Name=TCONS_00045625|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at scaffold_10:287429..288101- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00045625 vs. Swiss-Prot (Human)
Match: ZN253 (Zinc finger protein 253 OS=Homo sapiens GN=ZNF253 PE=1 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 2.260e-27 Identity = 53/99 (53.54%), Postives = 64/99 (64.65%), Query Frame = -2
Query: 10 NYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHFTQ 306
N FKCI C F + L H +K+H ++CEECGK F Q++NL H R H G KP++CEECGK F Q NLT H K HTGEKP+KCEECG F +
Sbjct: 170 NLFKCIICGKAFKRSSTLTTH-KKIHTGEKPYRCEECGKAFNQSANLTTHKRIHTGEKPYRCEECGKAFKQSSNLTTHKKIHTGEKPYKCEECGKAFNR 267 HSP 2 Score: 98.5969 bits (244), Expect = 1.648e-23 Identity = 48/114 (42.11%), Postives = 70/114 (61.40%), Query Frame = -2
Query: 16 MEMASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHF 357
+ +S++ ++ E ++C +C F++ L H +++H ++CEECGK F Q+SNL H + H G KP+KCEECGK F + +LT H HTGEKP+KCEECG F
Sbjct: 181 FKRSSTLTTHKKIHTGEKPYRCEECGKAFNQSANLTTH-KRIHTGEKPYRCEECGKAFKQSSNLTTHKKIHTGEKPYKCEECGKAFNRSTDLTTHKIVHTGEKPYKCEECGKAF 293 HSP 3 Score: 97.0561 bits (240), Expect = 5.552e-23 Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = -2
Query: 16 MASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHF 351
++S + + E ++C +C F+ L H +K+H ++C+ECGK FT S L H RTH G KP+KCEECGK FT LT H + HTGEKP+KCEECG F
Sbjct: 351 LSSHLTTHKILHTGEKPYRCRECGKAFNHSTTLFSH-EKIHTGEKPYKCDECGKTFTWPSILSKHKRTHTGEKPYKCEECGKSFTASSTLTTHKRIHTGEKPYKCEECGKAF 461 HSP 4 Score: 92.0485 bits (227), Expect = 3.158e-21 Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = -2
Query: 13 SSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHFT 345
S++ I + E +KC +C F L H + +H ++C ECGK F ++ L +H + H G KP+KC+ECGK FT L++H +THTGEKP+KCEECG FT
Sbjct: 325 SNLTIHKRIHTGEKPYKCEECGKAFHLSSHLTTH-KILHTGEKPYRCRECGKAFNHSTTLFSHEKIHTGEKPYKCDECGKTFTWPSILSKHKRTHTGEKPYKCEECGKSFT 434 HSP 5 Score: 90.8929 bits (224), Expect = 6.484e-21 Identity = 47/114 (41.23%), Postives = 66/114 (57.89%), Query Frame = -2
Query: 16 MEMASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHF 357
+ +S++ ++ E +KC +C F++ L H + VH ++CEECGK F S++ H + H GKP+ CEECGK F NLT H + HTGEKP+KCEECG F
Sbjct: 237 FKQSSNLTTHKKIHTGEKPYKCEECGKAFNRSTDLTTH-KIVHTGEKPYKCEECGKAFKHPSHVTTHKKIHTRGKPYNCEECGKSFKHCSNLTIHKRIHTGEKPYKCEECGKAF 349 HSP 6 Score: 90.8929 bits (224), Expect = 7.068e-21 Identity = 46/99 (46.46%), Postives = 56/99 (56.57%), Query Frame = -2
Query: 16 NENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHF 312
E +KC +C F + H +K+H + CEECGK F SNL H R H G KP+KCEECGK F +LT H HTGEKP++C ECG F
Sbjct: 280 GEKPYKCEECGKAFKHPSHVTTH-KKIHTRGKPYNCEECGKSFKHCSNLTIHKRIHTGEKPYKCEECGKAFHLSSHLTTHKILHTGEKPYRCRECGKAF 377 HSP 7 Score: 87.0409 bits (214), Expect = 1.694e-19 Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = -2
Query: 10 FKCIKCSFCFDKKEFLNEHIQKV-HGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPFKCEECGIHFTQ 300
F+C K F K F N + K H + F+C CGK F ++S L H + H G KP++CEECGK F Q NLT H + HTGEKP++CEECG F Q
Sbjct: 144 FQCDKYGKVFHK--FSNSNTYKTRHTGINLFKCIICGKAFKRSSTLTTHKKIHTGEKPYRCEECGKAFNQSANLTTHKRIHTGEKPYRCEECGKAFKQ 239 HSP 8 Score: 76.2554 bits (186), Expect = 6.796e-16 Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = -2
Query: 43 ASSIVIDEEERKNENYFKCIKCSFCFDKKEFLNEHIQKVHGEVMGFQCEECGKQFTQNSNLKAHLRTHLGGKPFKCEECGKLFTQKKNLTEHFKTHTGEKPF 348
++++ E+ E +KC +C F L++H ++ H ++CEECGK FT +S L H R H G KP+KCEECGK F +L +H K H KP+
Sbjct: 380 STTLFSHEKIHTGEKPYKCDECGKTFTWPSILSKH-KRTHTGEKPYKCEECGKSFTASSTLTTHKRIHTGEKPYKCEECGKAFNWSSDLNKHKKIHIERKPY 480 The following BLAST results are available for this feature:
BLAST of TCONS_00045625 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.