TCONS_00046233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046233
Unique NameTCONS_00046233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046233 ID=TCONS_00046233|Name=TCONS_00046233|organism=Clytia hemisphaerica|type=transcript|length=493bp
GGAGAGGTCTGACATTTTTTTGTGGAATTACAAATTTTCTCTGCGTGAAC
GTGAAATGCGATTTTTTTGcccgtgaatacgtgaattagGAAAAAATTgc
gcgtgaatgcgtgaattcaAGGTAGACTGGGGGAGCCTCAGAAACAACAT
ACTATAGTCAAGTAAtgtcttttctcatttattTTTACATGTGCTACCAT
GAGCCACATGACAATCTCTTCATAAAAAAGTAGCactcagaaagagaaaa
aatattggcaaataatcaaaacaaagataaaaatgtttcccagaaaaaaa
caaaaacataactttcatacgcttttttgaaaaggaaaatgaccgaaaat
CGAAATAATCTTTATATGGAAAGTACATAATGCCCATATACTCTTAAAAA
TAACTATTCATTCCCTTCGTTCCTTCCAATTACATCATAATATAATTACC
CCTTCCTCGAAACAAAGAGAAATCGACCAATCAGATCTTTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_107:22657..23149

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046233 ID=TCONS_00046233|Name=TCONS_00046233|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at scaffold_107:22657..23149 (Clytia hemisphaerica)
ATAAAAGATCTGATTGGTCGATTTCTCTTTGTTTCGAGGAAGGGGTAATT
ATATTATGATGTAATTGGAAGGAACGAAGGGAATGAATAGTTATTTTTAA
GAGTATATGGGCATTATGTACTTTCCATATAAAGATTATTTCGattttcg
gtcattttccttttcaaaaaagcgtatgaaagttatgtttttgttttttt
ctgggaaacatttttatctttgttttgattatttgccaatattttttctc
tttctgagtGCTACTTTTTTATGAAGAGATTGTCATGTGGCTCATGGTAG
CACATGTAAAaataaatgagaaaagacaTTACTTGACTATAGTATGTTGT
TTCTGAGGCTCCCCCAGTCTACCTtgaattcacgcattcacgcgcAATTT
TTTCctaattcacgtattcacgggCAAAAAAATCGCATTTCACGTTCACG
CAGAGAAAATTTGTAATTCCACAAAAAAATGTCAGACCTCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029529XLOC_029529Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046233-exon-scaffold_107-1491911889:22657..23149TCONS_00046233-exon-scaffold_107-1491911889:22657..23149Clytia hemisphaericaexon
TCONS_00046233-exon-scaffold_107-1510915933:22657..23149TCONS_00046233-exon-scaffold_107-1510915933:22657..23149Clytia hemisphaericaexon
TCONS_00046233-exon-scaffold_107-1575043694:22657..23149TCONS_00046233-exon-scaffold_107-1575043694:22657..23149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_107supercontigscaffold_107:22657..23149 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.365455	0	0	0.336928	0.266245	0.321213	0.451073	0.105269	0	0	0.0831971	0	0	0.0709346	0	0	0	0	0	0.241563	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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