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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053734 ID=TCONS_00053734|Name=TCONS_00053734|organism=Clytia hemisphaerica|type=transcript|length=1014bp
CCTGAAACGAAGAAAAGAAataagaaacttttgaaaaaaggaTTCTAAAA
TTGAATTCTCTCAGGTAATGGTTTTAATAGTTCTGcggatatttgagaaa
aaaaatattcgcaaataaaaatttgatgagTTTGATACAGGATAGCATCC
TGATCGAAGTATTTTTGTCAACTTGtaacagaaaaataaacttgGAATAT
AAAAAATCCTTTAAAGAACACGAAAAAAATCCCACCATTGGTATTTGCAA
CAGAATTCAATGCTTCATTACCATTCAATTTCGATTAGGGGTGACAATAC
TTTAATGCTTCGAATCTTTTTGGGATTCCAGCTCAAAAATCCGTTGCTCT
AATGTTAGATTGTCTTCTGCGAGAATTGCAATTTCCTTTCTCATTTCAGC
ATTATTTTCTTCCATAGCTCGAATGTAATCACAGGCTTTGTTAAGGGTAA
AACAACGAGATGACTTTTCTTGGATCGACTCTAAAGAGGCTTCAggaaga
gcatttttcagttcgTTTAAAGATGAGGTAATTAATTGACGACGTTGTCT
CTCTAAAGCATTGTGGTAGGCTCTTTGTTTACTGTTTGGAATGTTCTTAA
GAGACCTATGCGGTGGCTTGACTATCTTTTTGACCAGTTTGGAGGGTTTC
GTAACAGTTTTAGATGACGTGCTTTTCATAGGTCTCGCCATAACAGGTTT
CTGCAGGACTGTTGATGGAACGACTTCGATAGGAGTAGAAGGTAGCAAAA
ATTTCAGTTTGTTTACCCGGTTGTTTATCTGGTGGTGGTCTCGGAGAATG
GCTGTGGAACCGTGGGTAGTTTGTGCACAATTGACGAATACTTGGACGAA
ATCTGACGGAGAAAGCTTCATCACATCTTGTTGCTCATTCGAACTTTTTG
CTTCCATCTCTCTCAGAAGAAGCTGGTGCAGTAAGTGAATCAATACACTA
TCACACAACCATTCAATATGTCACATCAATcggaaaatttttaacaaacg
GAATTGCTAAAACA Run BLAST on NCBI protein sequence of TCONS_00053734-protein >TCONS_00053734-protein ID=TCONS_00053734-protein|Name=TCONS_00053734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MEAKSSNEQQDVMKLSPSDFVQVFVNCAQTTHGSTAILRDHHQINNRVNK
LKFLLPSTPIEVVPSTVLQKPVMARPMKSTSSKTVTKPSKLVKKIVKPPH
RSLKNIPNSKQRAYHNALERQRRQLITSSLNELKNALPEASLESIQEKSS
RCFTLNKACDYIRAMEENNAEMRKEIAILAEDNLTLEQRIFELESQKDSK
H Run BLAST on NCBI transcript from alignment at scaffold_233:609961..610974 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053734 ID=TCONS_00053734|Name=TCONS_00053734|organism=Clytia hemisphaerica|type=transcript|length=1014bp|location=Sequence derived from alignment at scaffold_233:609961..610974 (Clytia hemisphaerica)
TGTTTTAGCAATTCcgtttgttaaaaattttccgATTGATGTGACATATT
GAATGGTTGTGTGATAGTGTATTGATTCACTTACTGCACCAGCTTCTTCT
GAGAGAGATGGAAGCAAAAAGTTCGAATGAGCAACAAGATGTGATGAAGC
TTTCTCCGTCAGATTTCGTCCAAGTATTCGTCAATTGTGCACAAACTACC
CACGGTTCCACAGCCATTCTCCGAGACCACCACCAGATAAACAACCGGGT
AAACAAACTGAAATTTTTGCTACCTTCTACTCCTATCGAAGTCGTTCCAT
CAACAGTCCTGCAGAAACCTGTTATGGCGAGACCTATGAAAAGCACGTCA
TCTAAAACTGTTACGAAACCCTCCAAACTGGTCAAAAAGATAGTCAAGCC
ACCGCATAGGTCTCTTAAGAACATTCCAAACAGTAAACAAAGAGCCTACC
ACAATGCTTTAGAGAGACAACGTCGTCAATTAATTACCTCATCTTTAAAc
gaactgaaaaatgctcttccTGAAGCCTCTTTAGAGTCGATCCAAGAAAA
GTCATCTCGTTGTTTTACCCTTAACAAAGCCTGTGATTACATTCGAGCTA
TGGAAGAAAATAATGCTGAAATGAGAAAGGAAATTGCAATTCTCGCAGAA
GACAATCTAACATTAGAGCAACGGATTTTTGAGCTGGAATCCCAAAAAGA
TTCGAAGCATTAAAGTATTGTCACCCCTAATCGAAATTGAATGGTAATGA
AGCATTGAATTCTGTTGCAAATACCAATGGTGGGATTTTTTTCGTGTTCT
TTAAAGGATTTTTTATATTCcaagtttatttttctgttaCAAGTTGACAA
AAATACTTCGATCAGGATGCTATCCTGTATCAAActcatcaaatttttat
ttgcgaatattttttttctcaaatatccgCAGAACTATTAAAACCATTAC
CTGAGAGAATTCAATTTTAGAAtccttttttcaaaagtttcttatTTCTT
TTCTTCGTTTCAGG Coding sequence (CDS) from alignment at scaffold_233:609961..610974 >TCONS_00053734 ID=TCONS_00053734|Name=TCONS_00053734|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_233:609961..610974 (Clytia hemisphaerica)
ATGGAAGCAAAAAGTTCGAATGAGCAACAAGATGTGATGAAGCTTTCTCC
GTCAGATTTCGTCCAAGTATTCGTCAATTGTGCACAAACTACCCACGGTT
CCACAGCCATTCTCCGAGACCACCACCAGATAAACAACCGGGTAAACAAA
CTGAAATTTTTGCTACCTTCTACTCCTATCGAAGTCGTTCCATCAACAGT
CCTGCAGAAACCTGTTATGGCGAGACCTATGAAAAGCACGTCATCTAAAA
CTGTTACGAAACCCTCCAAACTGGTCAAAAAGATAGTCAAGCCACCGCAT
AGGTCTCTTAAGAACATTCCAAACAGTAAACAAAGAGCCTACCACAATGC
TTTAGAGAGACAACGTCGTCAATTAATTACCTCATCTTTAAAcgaactga
aaaatgctcttccTGAAGCCTCTTTAGAGTCGATCCAAGAAAAGTCATCT
CGTTGTTTTACCCTTAACAAAGCCTGTGATTACATTCGAGCTATGGAAGA
AAATAATGCTGAAATGAGAAAGGAAATTGCAATTCTCGCAGAAGACAATC
TAACATTAGAGCAACGGATTTTTGAGCTGGAATCCCAAAAAGATTCGAAG
CATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053734-exon-scaffold_233-1491911889:609961..610974 | TCONS_00053734-exon-scaffold_233-1491911889:609961..610974 | Clytia hemisphaerica | exon |
| TCONS_00053734-exon-scaffold_233-1510915933:609961..610974 | TCONS_00053734-exon-scaffold_233-1510915933:609961..610974 | Clytia hemisphaerica | exon |
| TCONS_00053734-exon-scaffold_233-1575043694:609961..610974 | TCONS_00053734-exon-scaffold_233-1575043694:609961..610974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_233 | supercontig | scaffold_233:609961..610974 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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