TCONS_00053592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053592
Unique NameTCONS_00053592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053592 ID=TCONS_00053592|Name=TCONS_00053592|organism=Clytia hemisphaerica|type=transcript|length=811bp
AGGAGTTTCATCACATAGAACAATGATCAgatttcaaactttaatttgaT
AAAACGTACTAATAGGATTTATATCAAGTTTCTATCTTTAATCTCAGACA
GTAAGAAATTCGAAACTGTAGAAAAAACAAATGGACGATGACTGATGTGG
AAAAAACTGCCGATTTAAATTTCAAGCGaataataaatcaaaatgaAGAT
TTCCAGCAATTGAACATAGAAGTGAACAAAGGATTATGGATCTTTGGTTA
TGGTTCGTTGTTGTGGAAAgtgaactttgaatatgaaaAAGACTTGTTTG
GTACCATCAAAGGATTTGCGAGAAGGTTTTGGCAAGAAAGCACTGATCAT
CGAGGAACTACTCAATTTCCTGGAAGGGTTGTAACATTGGTTCCAAGAGA
AGATAATGTTTTATGGGGAAGAGCATTTTACATACCGCCAGCATCAGTGA
AAGAAACAATGGATACCCTAAACTTTCGTGAAAAAGGTGGCTATTCATTG
ACAAAAGTTCTATTTCAACCTGACAACGCTGGTTTAAAAGAAATGGATGT
TTTCCTGTACATGGGCAGCAAGGGTAACCCAAATTATGCCGGTGAAGAGA
CGTTAGACAATATAGCAGCTCGTATAGCGAAAGCGGTAGGCCCTAGTGGC
CCCAATGTTAATTATTTGTACAATTTGGCGTCTGTTCTTGAGCAATACCG
TGATATGATTGGTGAAGACGATAGGGAACATACTTTAGCCTTGAAGAAAA
AGGTTGATGTCATTTTATTGAATAATAAAGTTTAATAGTTTTTAGTGTTG
TCTTTTTACTC
Run BLAST on NCBI

protein sequence of TCONS_00053592-protein

>TCONS_00053592-protein ID=TCONS_00053592-protein|Name=TCONS_00053592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MTDVEKTADLNFKRIINQNEDFQQLNIEVNKGLWIFGYGSLLWKVNFEYE
KDLFGTIKGFARRFWQESTDHRGTTQFPGRVVTLVPREDNVLWGRAFYIP
PASVKETMDTLNFREKGGYSLTKVLFQPDNAGLKEMDVFLYMGSKGNPNY
AGEETLDNIAARIAKAVGPSGPNVNYLYNLASVLEQYRDMIGEDDREHTL
ALKKKVDVILLNNKV
Run BLAST on NCBI

transcript from alignment at scaffold_233:907359..910494+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053592 ID=TCONS_00053592|Name=TCONS_00053592|organism=Clytia hemisphaerica|type=transcript|length=3136bp|location=Sequence derived from alignment at scaffold_233:907359..910494+ (Clytia hemisphaerica)
AGGAGTTTCATCACATAGAACAATGATCAgatttcaaactttaatttgaT
AAAACGTACTAATAGGATTTATATCAAGTTTCTATCTTTAATCTCAGACA
GTAAGAAATTCGAAACTGTAGAAAAAACAAATGGACGATGACTGATGTGG
AAAAAACTGCCGATTTAAATTTCAAGCGaataataaatcaaaatgaAGAT
TTCCAGCAATTGAACATAGAAGTGAACAAAGGATTATGGATCTTTGGTTA
TGGTTCGTTGTTGTGGAAAgtgaactttgaatatgaaaAAGACTTGTTTG
GTACCATCAAAGGATTTGCGAGAAGGTTTTGGCAAGAAAGCACTGATCAT
CGAGGAACTACTCAATTTGTAAGTTCTTGATTTAAACTTTAATCTCTAAC
TTTTCAGGActacgcttttttataagcacctCCGATTTCGGGTTAGCCTT
GGGGTTGGTTAGCattttagctcattttctgTTAAAAATTGCTCTGACAA
TACCCCTGATATTAAACCATATTCATACTTAGTGGGTCAGGGCTATCGTT
TCTATAGCCCCTATAATTCTGATTCATTTAAACGAGGGCAATCACCCCCA
CAAACCTAGTAATATATTAAGGGTAATTGTAGCACATTTCTGAGAAACTG
AGCTAAAATGCTAAAACAACTTCAGCCCTTAGCCCGAAATCGGGGtgtat
tacacgcttttttttataagaatggtgtaaatccatttcatcatagatat
tcttaacttttttgggaaaatcatcctaaaatattcttacagcattctta
ggttaggatcctaattcaaactagatttaacatttaatacatacgtctca
aaattacatgatggtgatattctttgtatattcttaatttttttaccatt
ttcatcatggacattcttataaagtgtattcttataaaaaaaagcgtgta
gtgtaTATACAATATCAATATCGAAGACTTCACGAGTACAACCTTAATTC
CATATAAATgttttttccaaatcccccTTCTCAATTTTGCGATTAACGTT
CAATTAttgtttcaatcttttttaGCCTGGAAGGGTTGTAACATTGGTTC
CAAGAGAAGATGTAAGAGTTCAGTATTTCACCATAAGTCCCACCATAAAT
TTGTAGTCCATTGTTTTTGAGTGTGCTTTAAGAAAAATTCTCTCGAGGAA
ATTGGTCTAACTATACTGATGTGGTTTGACGCATTGCATGAGTACACTTA
AACCAATTGGAGGGTTTGCATTGATGGGCTTAATAGAATGAATGCCTCCA
AATAAGTTTAGGTTCGATACTCTTTAAAGAGCTACAATTCACCTGGCAAA
TGAGTTTATTTTCAcctgggtcaacccataccatttGACAGAGTAATAAT
TTGCCATCACTTTGATACAAGAGTGTTATTGGTTAATGTTCCAGTTATTA
ATAAAGATATAAAAGTTATACTCGCTTCAGTTTTGACATTGCAATAAACC
AGTATCTtttaaaggggaactcaacaaatttgtcatttttatttttttcc
tgatttttggtaatattaagtataaaaatgagaaagaaagtatATAGGTT
CGATctctcaaataaaaatcatgaaaaatctctcttaacttcagttaaaa
atatgttcaaaaaatcaccccctttctttttaaaaaagatcgACTTTTCT
TTGGATTATGACGTCACTGTAATCAGAAAACAGAACAAATTCAGTTATGA
CTATAGTATGTTTCTGTTCTGTTCTGTTTTAAATTAGAAATAAACCAGCT
TTAACTTTAACTTCAGACAAAAGAAAGTTTAACAGAAAGTTGAATTTGTC
CAAAGCAGACAGAGATGTGCTGGATTATTTCATCCTTGGAATTTCACATA
TATCTTTTCGCTAGAATGTCTTAAACCTGTTCTTTATTCTCTGAGAAAGT
ATCCGAGGCGGCCGCTTTATAATATGTCCACTGCGGctttcgtcactttt
tttcatttttgccatttttatgttgatttatttattttttctccagTCAA
GGCCGCCCTTCGTTTAAAGTTGATTGTGCACGGTTCCAGGGGGGGGCatt
gaccttgacggccgacgggaaagtgccgctggagtttgaaaagtggaccc
tgtcagatattaatttttgtcaaaaatcctATTCCCGTGTGAATGGACTG
AATTTTGAGATATCAGAGGCAATATCTTACCTTTTTTTAGCCATTTCAGT
TAAGGCTTGATTCTAAATCTTTCAGAATCCCCTCTGACAGGTAAAAAATA
TAGTTAAAAGCTCTATTCATTAAAATCAAGACAAATAAATCTACAtcagt
tttgaaaaagtcttaaaaatattaatacgcccccttctcacagacccact
gggaacccttctcACCGGAAAAATTCTCCAATTTTCGTcttcactgaaaa
taatcaaataaaccaatcctcactgcaaagtaTTATGTTATTTTTACCAT
CCTCactaaattttctgacttgaaaacaaaagaatttaaatcccggTCAT
AAAAAATAAGGGAATATTGATCCCCGTaaagtttcagtccgttattttta
cccgcactggttgaaaaaattctaccaggtcagtgagaagggggtgtatt
aatAAATCGAGACGTAGTAAGAATTATTTACAAACCAATGTCTTTTTTAA
GGTGTTTTCgattcatttttatttgatagAATGTTTTATGGGGAAGAGCA
TTTTACATACCGCCAGCATCAGTGAAAGAAACAATGGATACCCTAAACTT
TCGTGAAAAAGGTGGCTATTCATTGACAAAAGTTCTATTTCAACCTGACA
ACGCTGGTTTAAAAGAAATGGATGTTTTCCTGTACATGGGCAGCAAGGGT
AACCCAAATTATGCCGGTGAAGAGACGTTAGACAATATAGCAGCTCGTAT
AGCGAAAGCGGTAGGCCCTAGTGGCCCCAATGTTAATTATTTGTACAATT
TGGCGTCTGTTCTTGAGCAATACCGTGATATGATTGGTGAAGACGATAGG
GAACATACTTTAGCCTTGAAGAAAAAGGTTGATGTCATTTTATTGAATAA
TAAAGTTTAATAGTTTTTAGTGTTGTCTTTTTACTC

Coding sequence (CDS) from alignment at scaffold_233:907359..910494+

>TCONS_00053592 ID=TCONS_00053592|Name=TCONS_00053592|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_233:907359..910494+ (Clytia hemisphaerica)
ATGACTGATGTGGAAAAAACTGCCGATTTAAATTTCAAGCGaataataaa
tcaaaatgaAGATTTCCAGCAATTGAACATAGAAGTGAACAAAGGATTAT
GGATCTTTGGTTATGGTTCGTTGTTGTGGAAAgtgaactttgaatatgaa
aAAGACTTGTTTGGTACCATCAAAGGATTTGCGAGAAGGTTTTGGCAAGA
AAGCACTGATCATCGAGGAACTACTCAATTTCCTGGAAGGGTTGTAACAT
TGGTTCCAAGAGAAGATAATGTTTTATGGGGAAGAGCATTTTACATACCG
CCAGCATCAGTGAAAGAAACAATGGATACCCTAAACTTTCGTGAAAAAGG
TGGCTATTCATTGACAAAAGTTCTATTTCAACCTGACAACGCTGGTTTAA
AAGAAATGGATGTTTTCCTGTACATGGGCAGCAAGGGTAACCCAAATTAT
GCCGGTGAAGAGACGTTAGACAATATAGCAGCTCGTATAGCGAAAGCGGT
AGGCCCTAGTGGCCCCAATGTTAATTATTTGTACAATTTGGCGTCTGTTC
TTGAGCAATACCGTGATATGATTGGTGAAGACGATAGGGAACATACTTTA
GCCTTGAAGAAAAAGGTTGATGTCATTTTATTGAATAATAAAGTTTAAAT
GACTGATGTGGAAAAAACTGCCGATTTAAATTTCAAGCGaataataaatc
aaaatgaAGATTTCCAGCAATTGAACATAGAAGTGAACAAAGGATTATGG
ATCTTTGGTTATGGTTCGTTGTTGTGGAAAgtgaactttgaatatgaaaA
AGACTTGTTTGGTACCATCAAAGGATTTGCGAGAAGGTTTTGGCAAGAAA
GCACTGATCATCGAGGAACTACTCAATTTCCTGGAAGGGTTGTAACATTG
GTTCCAAGAGAAGATAATGTTTTATGGGGAAGAGCATTTTACATACCGCC
AGCATCAGTGAAAGAAACAATGGATACCCTAAACTTTCGTGAAAAAGGTG
GCTATTCATTGACAAAAGTTCTATTTCAACCTGACAACGCTGGTTTAAAA
GAAATGGATGTTTTCCTGTACATGGGCAGCAAGGGTAACCCAAATTATGC
CGGTGAAGAGACGTTAGACAATATAGCAGCTCGTATAGCGAAAGCGGTAG
GCCCTAGTGGCCCCAATGTTAATTATTTGTACAATTTGGCGTCTGTTCTT
GAGCAATACCGTGATATGATTGGTGAAGACGATAGGGAACATACTTTAGC
CTTGAAGAAAAAGGTTGATGTCATTTTATTGAATAATAAAGTTTAAATGA
CTGATGTGGAAAAAACTGCCGATTTAAATTTCAAGCGaataataaatcaa
aatgaAGATTTCCAGCAATTGAACATAGAAGTGAACAAAGGATTATGGAT
CTTTGGTTATGGTTCGTTGTTGTGGAAAgtgaactttgaatatgaaaAAG
ACTTGTTTGGTACCATCAAAGGATTTGCGAGAAGGTTTTGGCAAGAAAGC
ACTGATCATCGAGGAACTACTCAATTTCCTGGAAGGGTTGTAACATTGGT
TCCAAGAGAAGATAATGTTTTATGGGGAAGAGCATTTTACATACCGCCAG
CATCAGTGAAAGAAACAATGGATACCCTAAACTTTCGTGAAAAAGGTGGC
TATTCATTGACAAAAGTTCTATTTCAACCTGACAACGCTGGTTTAAAAGA
AATGGATGTTTTCCTGTACATGGGCAGCAAGGGTAACCCAAATTATGCCG
GTGAAGAGACGTTAGACAATATAGCAGCTCGTATAGCGAAAGCGGTAGGC
CCTAGTGGCCCCAATGTTAATTATTTGTACAATTTGGCGTCTGTTCTTGA
GCAATACCGTGATATGATTGGTGAAGACGATAGGGAACATACTTTAGCCT
TGAAGAAAAAGGTTGATGTCATTTTATTGAATAATAAAGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033817XLOC_033817Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053592-proteinTCONS_00053592-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053592-exon-scaffold_233-1491911889:907359..907726TCONS_00053592-exon-scaffold_233-1491911889:907359..907726Clytia hemisphaericaexon
TCONS_00053592-exon-scaffold_233-1510915933:907359..907726TCONS_00053592-exon-scaffold_233-1510915933:907359..907726Clytia hemisphaericaexon
TCONS_00053592-exon-scaffold_233-1575043694:907359..907726TCONS_00053592-exon-scaffold_233-1575043694:907359..907726Clytia hemisphaericaexon
TCONS_00053592-exon-scaffold_233-1491911889:908434..908469TCONS_00053592-exon-scaffold_233-1491911889:908434..908469Clytia hemisphaericaexon
TCONS_00053592-exon-scaffold_233-1510915933:908434..908469TCONS_00053592-exon-scaffold_233-1510915933:908434..908469Clytia hemisphaericaexon
TCONS_00053592-exon-scaffold_233-1575043694:908434..908469TCONS_00053592-exon-scaffold_233-1575043694:908434..908469Clytia hemisphaericaexon
TCONS_00053592-exon-scaffold_233-1491911889:910088..910494TCONS_00053592-exon-scaffold_233-1491911889:910088..910494Clytia hemisphaericaexon
TCONS_00053592-exon-scaffold_233-1510915933:910088..910494TCONS_00053592-exon-scaffold_233-1510915933:910088..910494Clytia hemisphaericaexon
TCONS_00053592-exon-scaffold_233-1575043694:910088..910494TCONS_00053592-exon-scaffold_233-1575043694:910088..910494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_233supercontigscaffold_233:907359..910494 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.7463	21.436	21.9532	19.911	34.492	25.2464	9.92559	13.6191	3.87362	3.07571	3.04506	2.3942	3.05718	2.36083	7.62983	10.7377	11.7681	11.7445	3.3203	5.0478	13.1624	12.8403	34.7318	36.9823	21.8295	26.5411	124.365	119.186	12.6898	8.99689
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006840ChaC
IPR013024GGCT-like
Vocabulary: Molecular Function
TermDefinition
GO:0003839gamma-glutamylcyclotransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006751glutathione catabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006751 glutathione catabolic process
molecular_function GO:0003839 gamma-glutamylcyclotransferase activity
Blast
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BLAST of TCONS_00053592 vs. Swiss-Prot (Human)
Match: CHAC2 (Putative glutathione-specific gamma-glutamylcyclotransferase 2 OS=Homo sapiens GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.372e-50
Identity = 82/174 (47.13%), Postives = 110/174 (63.22%), Query Frame = 3 
Query:  234 LWIFGYGSLLWKVNFEYEKDLFGTIKGFARRFWQESTDHRGTTQFPGRVVTLVPREDNVLWGRAFYIPPASVKETMDTLNFREKGGYSLTKVLFQPDNAGLKEMDVFLYMGSKGNPNYAGEETLDNIAARIAKAVGPSGPNVNYLYNLASVLEQYRDMIGEDDREHTLALKKKV 755
            +W+FGYGSL+WKV+F Y+  L G I  ++RRFWQ STDHRG    PGRVVTLV      +WG A+ +P    +E    L+FREKGGY  T V+F P +   K   V LY+G+  NP+Y G   L++IA +I  A GPSG N  YL+ LA+ +   R+++ E+  EH  AL+K V
Sbjct:    1 MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCVWGVAYRLPVGKEEEVKAYLDFREKGGYRTTTVIFYPKDPTTKPFSVLLYIGTCDNPDYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELANSI---RNLVPEEADEHLFALEKLV 171
The following BLAST results are available for this feature:
BLAST of TCONS_00053592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHAC22.372e-5047.13Putative glutathione-specific gamma-glutamylcyclot... [more]
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