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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00054043 ID=TCONS_00054043|Name=TCONS_00054043|organism=Clytia hemisphaerica|type=transcript|length=1526bp
TATAGTGAATTGGCTTGATTTGTTGTTTGGTGTTGTTTATGTTCCTATTA
TGACGATTATTATGGTATATATGTGCTGGTTGACAGCCATGCTGACATGC
CTGATGTGTgttgtttgaaattttgttttgttcattttgAGTCAGATTCT
TTTTTGTCTGTCGGGCTCAATGAGATGCCAttgcaattatttttttttct
ttttcaagattcTATTATAAGTATGATGTAAATAAATGAATTCTGGTTGC
CTGGTATctcttgagaattttttttgttcgtcTGTTCAcattttgtttta
atattttttcttttaatcatCATTCTTGTTGACGTGTTTTTTTAATGTCG
TGGCTATACATTTGGATCGTCTTTTATTATAGAAGGAAAAGAAATAGCTC
TCGACTATTTTTCATTAGTTTTTACATGCTACCTTGGAAACATTGAAAAG
AAAAGATctcaaaagaatattttcccTTTCAGAAAGTAATTTCTCAGATG
TGTTATAATTTATATTGCAGATGTGTTAAAAAGTCGTAACCAAATGTTAT
AGCCCTTCTTACTGGATAGAGAACATTGTTTTAATAAAgcaaaatgtgat
ttttgatatttgttaGTTGCTTGGCAACAAAATTGTTAGTCTTGATCTTC
GTTATGTTTTAAATTATTCTatgtttgtttgaaattttcaaaaaaaaacc
caCTTTGCCTTATTTTTAGGCATTCTCGTTGTATTTTTACCATAGATTGG
TATTTTTTGCGTGTATGTTCCTGTGTTCCGTATTGCTGCTTGATAATTGG
TTTTTTCCTCTTCAAAAAAGCTTGTTTTTATGatttctgtaaaaatttta
gctttttattttttcacttttcaaaaaatgtcaacatttattcatatttt
ttttcgttttctgtccctgtttttctttttattattaccTCGTTGTCTTT
ttattatctttccaacgcgaAAACTCCCTGTgaccttttgttttgtttct
ttgatttgattttgatggtGTGGACTTTTTAAGCGTGTGTCAATCTcaaa
agtagataaaagatcTTGTGCTCATGTTTTGTTCGTAGAAAAAAGGATCA
TAATGGATAATATTTAAgaaataatatatttttattggaCTACAAACATT
TTTTGTATATACGAGACATATTTATTGAAAACCAAGACAAATATTGGCTG
TgcgataaaaaaaaaatttttttagaaaagaaaaatgaacatGCAAAAGC
CTGTTGGTGAATTGCTTAATCACACCTCAATATTTTATAGAGTCACACCC
ATTTAAATGAGCTGTTAATTGAGCCAATATGATTCGAAGCATTTTGATTT
GCTTAACTTTACAGTAGTAGCAATTCCAGTACTGGTTTTTGAGTGTTCAC
CCTTTGATAACAATAGTGGTTGCCTGGATAGTCGTTGCTAGTTTGTGATC
ATTAGAATTTTTATCATGAATTCTATACACTATAAAGAAATTCTTTCAGC
TATTTTTTGCCACCTatatcttaaaa Run BLAST on NCBI transcript from alignment at scaffold_238:12382..13907 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00054043 ID=TCONS_00054043|Name=TCONS_00054043|organism=Clytia hemisphaerica|type=transcript|length=1526bp|location=Sequence derived from alignment at scaffold_238:12382..13907 (Clytia hemisphaerica)
ttttaagatatAGGTGGCAAAAAATAGCTGAAAGAATTTCTTTATAGTGT
ATAGAATTCATGATAAAAATTCTAATGATCACAAACTAGCAACGACTATC
CAGGCAACCACTATTGTTATCAAAGGGTGAACACTCAAAAACCAGTACTG
GAATTGCTACTACTGTAAAGTTAAGCAAATCAAAATGCTTCGAATCATAT
TGGCTCAATTAACAGCTCATTTAAATGGGTGTGACTCTATAAAATATTGA
GGTGTGATTAAGCAATTCACCAACAGGCTTTTGCatgttcatttttcttt
tctaaaaaaattttttttttatcgcACAGCCAATATTTGTCTTGGTTTTC
AATAAATATGTCTCGTATATACAAAAAATGTTTGTAGtccaataaaaata
tattatttcTTAAATATTATCCATTATGATCCTTTTTTCTACGAACAAAA
CATGAGCACAAgatcttttatctacttttgAGATTGACACACGCTTAAAA
AGTCCACaccatcaaaatcaaatcaaagaaacaaaacaaaaggtcACAGG
GAGTTTtcgcgttggaaagataataaAAAGACAACGAggtaataataaaa
agaaaaacagggacagaaaacgaaaaaaaatatgaataaatgttgacatt
ttttgaaaagtgaaaaaataaaaagctaaaatttttacagaaatCATAAA
AACAAGCTTTTTTGAAGAGGAAAAAACCAATTATCAAGCAGCAATACGGA
ACACAGGAACATACACGCAAAAAATACCAATCTATGGTAAAAATACAACG
AGAATGCCTAAAAATAAGGCAAAGtgggtttttttttgaaaatttcaaac
aaacatAGAATAATTTAAAACATAACGAAGATCAAGACTAACAATTTTGT
TGCCAAGCAACtaacaaatatcaaaaatcacattttgcTTTATTAAAACA
ATGTTCTCTATCCAGTAAGAAGGGCTATAACATTTGGTTACGACTTTTTA
ACACATCTGCAATATAAATTATAACACATCTGAGAAATTACTTTCTGAAA
gggaaaatattcttttgagATCTTTTCTTTTCAATGTTTCCAAGGTAGCA
TGTAAAAACTAATGAAAAATAGTCGAGAGCTATTTCTTTTCCTTCTATAA
TAAAAGACGATCCAAATGTATAGCCACGACATTAAAAAAACACGTCAACA
AGAATGatgattaaaagaaaaaatattaaaacaaaatgTGAACAgacgaa
caaaaaaaattctcaagagATACCAGGCAACCAGAATTCATTTATTTACA
TCATACTTATAATAgaatcttgaaaaagaaaaaaaaataattgcaaTGGC
ATCTCATTGAGCCCGACAGACAAAAAAGAATCTGACTcaaaatgaacaaa
acaaaatttcaaacaacACACATCAGGCATGTCAGCATGGCTGTCAACCA
GCACATATATACCATAATAATCGTCATAATAGGAACATAAACAACACCAA
ACAACAAATCAAGCCAATTCACTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00054043-exon-scaffold_238-1491911889:12382..13907 | TCONS_00054043-exon-scaffold_238-1491911889:12382..13907 | Clytia hemisphaerica | exon |
| TCONS_00054043-exon-scaffold_238-1510915933:12382..13907 | TCONS_00054043-exon-scaffold_238-1510915933:12382..13907 | Clytia hemisphaerica | exon |
| TCONS_00054043-exon-scaffold_238-1575043694:12382..13907 | TCONS_00054043-exon-scaffold_238-1575043694:12382..13907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_238 | supercontig | scaffold_238:12382..13907 . |
Blast
The following BLAST results are available for this feature:
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